mRNA_F-serratus_M_contig1089.815.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1089.815.1
Unique NamemRNA_F-serratus_M_contig1089.815.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1089.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1089contigF-serratus_M_contig1089:264692..267907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1089.815.1prot_F-serratus_M_contig1089.815.1Fucus serratus malepolypeptideF-serratus_M_contig1089 264692..267906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.298009-CDS-F-serratus_M_contig1089:264691..2648651622928942.298009-CDS-F-serratus_M_contig1089:264691..264865Fucus serratus maleCDSF-serratus_M_contig1089 264692..264865 +
1690962638.14324-CDS-F-serratus_M_contig1089:264691..2648651690962638.14324-CDS-F-serratus_M_contig1089:264691..264865Fucus serratus maleCDSF-serratus_M_contig1089 264692..264865 +
1622928942.310674-CDS-F-serratus_M_contig1089:266413..2664961622928942.310674-CDS-F-serratus_M_contig1089:266413..266496Fucus serratus maleCDSF-serratus_M_contig1089 266414..266496 +
1690962638.157317-CDS-F-serratus_M_contig1089:266413..2664961690962638.157317-CDS-F-serratus_M_contig1089:266413..266496Fucus serratus maleCDSF-serratus_M_contig1089 266414..266496 +
1622928942.3237221-CDS-F-serratus_M_contig1089:267854..2679061622928942.3237221-CDS-F-serratus_M_contig1089:267854..267906Fucus serratus maleCDSF-serratus_M_contig1089 267855..267906 +
1690962638.1727457-CDS-F-serratus_M_contig1089:267854..2679061690962638.1727457-CDS-F-serratus_M_contig1089:267854..267906Fucus serratus maleCDSF-serratus_M_contig1089 267855..267906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1089.815.1

>prot_F-serratus_M_contig1089.815.1 ID=prot_F-serratus_M_contig1089.815.1|Name=mRNA_F-serratus_M_contig1089.815.1|organism=Fucus serratus male|type=polypeptide|length=103bp
FLTSVTLQHRLRHCASYHNKEGEPICIHSCSSPPTRKLVAAASILAGGRE
MSQQRIRKAKPSVLADATNTRDDGTLASTPRSAEDTVSKNREDKSRVLAR
VWK
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mRNA from alignment at F-serratus_M_contig1089:264692..267907+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1089.815.1 ID=mRNA_F-serratus_M_contig1089.815.1|Name=mRNA_F-serratus_M_contig1089.815.1|organism=Fucus serratus male|type=mRNA|length=3216bp|location=Sequence derived from alignment at F-serratus_M_contig1089:264692..267907+ (Fucus serratus male)
TTCTTGACGTCTGTCACGCTACAGCATCGACTTCGACATTGCGCTTCTTA
CCACAACAAGGAAGGAGAACCGATCTGTATACACAGCTGCAGCAGTCCAC
CCACGCGCAAGCTCGTCGCAGCGGCTTCGATTCTGGCAGGAGGGCGTGAA
ATGTCGCAGCAAAGGATTAGGAAGGTGAGCAATGGTTCGTCCAAACTAAG
CGTTTCTGAATCATGACCTACGAAGGATCAACTCGTAGGGTGCGGGTAAT
TGCAATCATGCATTCGTTCGTACTCACTGGAGTATACAAGCACATTAATG
AGTTTGTTACTGTCCTCGGGCCGTTTTGGCGTTAACACAAAATTCAAAAC
AAAATACATGGTTGCATGCTTCGTAGATCGGCCATCCTAATGCGGCCGAA
GACAACAGGCTCTTTGGTGTAAGCTGGCAGCATGCGTTATATTTGTGCCG
CCCACAGCTCCATTATTGATGTTAGGTCGACCTTCCGTCAGTGGTCGTCG
CTGAGGAGAGTGGCTTGGGCCATCGTCGGAGGAGTAAGGAATTGCCCGAA
AGATGTTTTCTTCTAGTAGTATCTAGACTATACTCCGTAGGTTATAAATT
TAAAATAAATTAGGTAGACTATAACTTTGTTTGTATGTTGCCAACAATCT
TCTACAGTACAGTAATCGTTTTACCCTGAGGAACTCTTCCTGCTTACTGT
GGCGGCCACCACACTCTCATCAAGAAACACTTCCGTCAACTTTTGAGGAG
CGCACACGCTTGGGCCACAACACAAGAGAGAAGTGCCAGACAGTAGCCAT
ACAGTGAGTCAAAACCAAAGGGATCCCAAAAAGTGTGTTGAGAACCCGGT
TCTCAACACTAACATACAAAAACAACAACTGAATACGTCACCGCGTTGGG
AATCTAACGGCCGGTCTTTTCATCCAGGCCGGTCTTTTCTTTGTAATATA
TATATTGATTCTTGATTGATTTTTTCGTTGGACGTACCAGCCGGGGTCAC
ACAGGAGAAAGGTCACACAGGATTTCTCATACAACTTCCTTCTGCGGTGC
GTGCCTTAAATTTTATCGCGAGAAGGATTAAGCCATTCCTTTCCCTCGTC
GACGGCGAAGTCGAATTTATGTGTACTAACGAATTAATCGTTCTCCACCC
GTTGGGCATTTTTATTTTGGTTTTCAGTTTTTAGCGAGAAAAATCCAGTT
GCCCAGGATCGAACTCACGTCCCAACGTGTCAGAAAGTTACGAGGAACCT
ACTGAGCTACCGGGGCGACCGGTTTTCCAAATTTAATGTAGGAAAGAAAA
ATAGTGATCACCGTCTGATTCATTTCGACGTGGTATGAATTTTAGTTTTG
ACGCAAAGACCGACTGTAGAGGCCACCTTCCATGGTTGGAAATTCACCCT
CTTTCAGCAATCTGCAGGGCTTTTATTACACATAAAAACGGTCGACAGAG
AAACAAAAAAATAACGTATACGTGTAATGCGTATTACAGCTTTTTCAACG
ACGCTGTATGAGGGCACGTGTGAACGTTGAGGACGAAACAAAAAAATAAT
CGTACAAAAAAAGAACGTATACGTGTAATGCGTATTACACTGAAGTGTAC
AAGTATTATTCCAATAATTTCTCTACAATTACGCATACAGTTGTACACGT
TGTTTTGTTGCCAATGGTTTCTCATACAAAGACTACTACTATTGTATCGA
CGATAAACGGAAAATTCCTCAGGCAAAGCCTTCCGTACTGGCTGATGCTA
CGAATACACGCGACGATGGCACCCTGGCCAGCACGCCGAGATCCGCGGAA
GACACGTGAGTTCATTCTTCTGCGTCCCTAAGTCTCTATTATAGTACAGG
TAAACGCTGACAGACGAACGATCACAGGGATCCTGATAGACACGAAAAGG
AGATCTTCGCTGATGAGTTTCTGCCACGAGCAAAGGGAAATGTAACACTA
GTATGATTCTGGAGACCGCAAATTCTGGGGGGTATTTTACCAAATGTGTT
ATTATTTTGAAATGCGTACGGATAGGTCACCGAAACAACCGCTTCCGGTT
GGTCGGCAAGTTTCCCCCGTACTGAGCGTTTTTTTACAAAGGGGTTTGAC
AAAAATGATCCCGGGAGGGGACATTAATGTGCCGTCCCCTACTTAAGCGT
GATAAAAATTTAATTCCCCCCCCCCACACCCCTTATCTTTGAACGCTTCG
AATCTTAACATACATATAACATGACTGTTACGCGTAACACATGATTATTC
ACTTTGACATATTCAGTATTCTTAAAAATATGTACAATAATTTAGTCTTA
TCGTTGAACGCTTCGAATCTTAACATACATGTAACATGACTGTTACGCGT
AACACATGATTATTCACTTAGGCATATCTAGTATTCTTAACACATATGCA
CCATAAATTAGTCTTACCTTTGAACGCTTCGAATCTTGACATATATATAA
CATGACTGTTACGCGTAGCACATCATTATACACTTAGGTATATCTAGTAT
TCTTTAAACATATGCACCATAAATTAGTCTTACCTTTGAACGCTTCGAAT
CTTGACATATATATAACATGACTGTTACGCGTAGCACATGATTATTCACT
TCGGCATATCCAGTATTCTGAAAAATATGTACCATAATTTAGTCTTATCG
TTGAACGCTTCGAATCTTATCATACATATAACATGACTGTTACGCGTAAC
ACATAATTACTCACTTTGGCATATATAGTGTTCTTAATACGCGGAGTACA
AGTGTTGCGCGTAACACGAAAACTCTACGCTTTTACGTATTCCAAGCCTC
AGCCGTTCAGTGAATACAACACTCACCGCTGTTTGAACAAAGCTAGTTAC
GCGTAATACACACATGTGAAAATAACTTTGGTAAATTGCGGATAAACCAA
GTAGCGCTGAGTTAAGGAGGGTCGGGTTTGCCGTGACTACAGTAGCGACA
ATCATGATACGACAATCATGATACGACAATCATGATACTATACTCTATAA
GCGTAGTGAAGAATGACCCATTTTACGCTTAACACAGAAATGTTAACTGA
TATGTTCTCGACGTACTTAGATAACTCACTTCGCTCGTCTACCATTGAGT
CCTCTGAAGCGTTTACAGGAATGTTTTTAATCCGTCTCGGCAACAATCCC
TGATTCACGACAGCGTATCGAAAAACCGTGAGGACAAAAGCCGGGTATTA
GCACGCGTGTGGAAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1089:264692..267907+

>mRNA_F-serratus_M_contig1089.815.1 ID=mRNA_F-serratus_M_contig1089.815.1|Name=mRNA_F-serratus_M_contig1089.815.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1089:264692..267907+ (Fucus serratus male)
TTCTTGACGTCTGTCACGCTACAGCATCGACTTCGACATTGCGCTTCTTA
CCACAACAAGGAAGGAGAACCGATCTGTATACACAGCTGCAGCAGTCCAC
CCACGCGCAAGCTCGTCGCAGCGGCTTCGATTCTGGCAGGAGGGCGTGAA
ATGTCGCAGCAAAGGATTAGGAAGTTCTTGACGTCTGTCACGCTACAGCA
TCGACTTCGACATTGCGCTTCTTACCACAACAAGGAAGGAGAACCGATCT
GTATACACAGCTGCAGCAGTCCACCCACGCGCAAGCTCGTCGCAGCGGCT
TCGATTCTGGCAGGAGGGCGTGAAATGTCGCAGCAAAGGATTAGGAAGGC
AAAGCCTTCCGTACTGGCTGATGCTACGAATACACGCGACGATGGCACCC
TGGCCAGCACGCCGAGATCCGCGGAAGACACGCAAAGCCTTCCGTACTGG
CTGATGCTACGAATACACGCGACGATGGCACCCTGGCCAGCACGCCGAGA
TCCGCGGAAGACACCGTATCGAAAAACCGTGAGGACAAAAGCCGGGTATT
AGCACGCGTGTGGAAGCGTATCGAAAAACCGTGAGGACAAAAGCCGGGTA
TTAGCACGCGTGTGGAAG
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