mRNA_F-serratus_M_contig1088.813.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1088.813.1
Unique NamemRNA_F-serratus_M_contig1088.813.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1088.813.1 vs. uniprot
Match: A0A6H5JK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.650e-9
Identity = 54/151 (35.76%), Postives = 75/151 (49.67%), Query Frame = 1 
Query:    4 DKRCVIECNKQHFLLSVVVDCQPSGSKFHVP---LDLDFCVGEP------VVLNNTDKEQYRDNLC---DSYK--VLFRESEKDEWKLLEDDKVTILEEDGTFFLRASISHFSKYCVGENLRNASDISGVECKLSHP-PKEKEIEVVNATD 411
            DKR ++E     FLLS ++DCQPSG+ F  P   L LDF  GE           + D E  +++L     +YK  V +R  E   W+L ED      ++   +FLR  I HFS  C+G  L   S      C +S    K++++E VNATD
Sbjct:  823 DKRHIVERGDGLFLLSTMIDCQPSGTIFQDPQNPLVLDFVFGEEDEDSQGTDDTDEDTEDGKEDLAILRATYKARVFWRMEEGQPWELHEDGAWDFDDQLKKYFLRVKIRHFSDVCLGTELSLHSSCDS--CVVSRGRTKKRQLEFVNATD 971
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1088.813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK27_9PHAE2.650e-935.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1088contigF-serratus_M_contig1088:264540..265297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_003430.1
Exons2
Model size412
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.063583-CDS-F-serratus_M_contig1088:264539..2647641622928942.063583-CDS-F-serratus_M_contig1088:264539..264764Fucus serratus maleCDSF-serratus_M_contig1088 264540..264764 -
1690962638.0222273-CDS-F-serratus_M_contig1088:264539..2647641690962638.0222273-CDS-F-serratus_M_contig1088:264539..264764Fucus serratus maleCDSF-serratus_M_contig1088 264540..264764 -
1622928942.0806158-CDS-F-serratus_M_contig1088:265111..2652971622928942.0806158-CDS-F-serratus_M_contig1088:265111..265297Fucus serratus maleCDSF-serratus_M_contig1088 265112..265297 -
1690962638.034747-CDS-F-serratus_M_contig1088:265111..2652971690962638.034747-CDS-F-serratus_M_contig1088:265111..265297Fucus serratus maleCDSF-serratus_M_contig1088 265112..265297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1088.813.1prot_F-serratus_M_contig1088.813.1Fucus serratus malepolypeptideF-serratus_M_contig1088 264540..265297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1088.813.1

>prot_F-serratus_M_contig1088.813.1 ID=prot_F-serratus_M_contig1088.813.1|Name=mRNA_F-serratus_M_contig1088.813.1|organism=Fucus serratus male|type=polypeptide|length=137bp
ADKRCVIECNKQHFLLSVVVDCQPSGSKFHVPLDLDFCVGEPVVLNNTDK
EQYRDNLCDSYKVLFRESEKDEWKLLEDDKVTILEEDGTFFLRASISHFS
KYCVGENLRNASDISGVECKLSHPPKEKEIEVVNATD
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mRNA from alignment at F-serratus_M_contig1088:264540..265297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1088.813.1 ID=mRNA_F-serratus_M_contig1088.813.1|Name=mRNA_F-serratus_M_contig1088.813.1|organism=Fucus serratus male|type=mRNA|length=758bp|location=Sequence derived from alignment at F-serratus_M_contig1088:264540..265297- (Fucus serratus male)
GCCGACAAGAGATGCGTCATTGAGTGTAACAAGCAACATTTCCTTCTTTC
GGTGGTGGTTGATTGCCAGCCATCGGGCAGCAAGTTCCACGTTCCGCTGG
ATCTTGACTTCTGTGTTGGCGAACCTGTCGTCCTCAACAATACCGATAAA
GAACAGTACAGGGACAACCTCTGTGACAGTTACAAGGTCAGTAGCTTCTA
TTGTACAGTCACAAATATAATACTTCGGAAGCTTACCCCGCCATATCACA
TGCAGTTTTGCCTACGCGCTGCGCAGCGACATTATTTCGTAGGTATTGTG
TGTTGCAAGCTAAGATGATTTCTTGACTACCAATTTTGAGGTGGTAGTGA
TTACGCTTTTTATCATCAAAACACTGCTATTTCCCAACTCTTGCGGAGTG
TTGTACCTATGTGTGCGATACTCTGCCTCCGAGGTAGGGTTATTTTGCAG
ACAGGCATCGGCTCGAAGGTCTCGATGCGAGTCACAATAAACAATACTTT
CTCTAAAATTTGTTTCCAACTTATACGGTACAGGTTCTCTTTCGAGAAAG
CGAAAAGGACGAATGGAAACTCCTCGAGGATGATAAAGTAACGATCTTAG
AGGAAGATGGCACATTCTTCTTACGGGCAAGCATCAGCCACTTTTCAAAA
TACTGTGTCGGCGAGAACCTGCGCAACGCCTCAGACATTTCTGGTGTCGA
GTGTAAATTGAGTCATCCTCCGAAGGAGAAGGAAATTGAGGTCGTCAACG
CAACTGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1088:264540..265297-

>mRNA_F-serratus_M_contig1088.813.1 ID=mRNA_F-serratus_M_contig1088.813.1|Name=mRNA_F-serratus_M_contig1088.813.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig1088:264540..265297- (Fucus serratus male)
GCCGACAAGAGATGCGTCATTGAGTGTAACAAGCAACATTTCCTTCTTTC
GGTGGTGGTTGATTGCCAGCCATCGGGCAGCAAGTTCCACGTTCCGCTGG
ATCTTGACTTCTGTGTTGGCGAACCTGTCGTCCTCAACAATACCGATAAA
GAACAGTACAGGGACAACCTCTGTGACAGTTACAAGGCCGACAAGAGATG
CGTCATTGAGTGTAACAAGCAACATTTCCTTCTTTCGGTGGTGGTTGATT
GCCAGCCATCGGGCAGCAAGTTCCACGTTCCGCTGGATCTTGACTTCTGT
GTTGGCGAACCTGTCGTCCTCAACAATACCGATAAAGAACAGTACAGGGA
CAACCTCTGTGACAGTTACAAGGTTCTCTTTCGAGAAAGCGAAAAGGACG
AATGGAAACTCCTCGAGGATGATAAAGTAACGATCTTAGAGGAAGATGGC
ACATTCTTCTTACGGGCAAGCATCAGCCACTTTTCAAAATACTGTGTCGG
CGAGAACCTGCGCAACGCCTCAGACATTTCTGGTGTCGAGTGTAAATTGA
GTCATCCTCCGAAGGAGAAGGAAATTGAGGTCGTCAACGCAACTGACGTT
CTCTTTCGAGAAAGCGAAAAGGACGAATGGAAACTCCTCGAGGATGATAA
AGTAACGATCTTAGAGGAAGATGGCACATTCTTCTTACGGGCAAGCATCA
GCCACTTTTCAAAATACTGTGTCGGCGAGAACCTGCGCAACGCCTCAGAC
ATTTCTGGTGTCGAGTGTAAATTGAGTCATCCTCCGAAGGAGAAGGAAAT
TGAGGTCGTCAACGCAACTGAC
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