mRNA_F-serratus_M_contig1086.795.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1086.795.1
Unique NamemRNA_F-serratus_M_contig1086.795.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1086.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1086contigF-serratus_M_contig1086:32164..33007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size595
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.2480404-CDS-F-serratus_M_contig1086:32163..325851622928936.2480404-CDS-F-serratus_M_contig1086:32163..32585Fucus serratus maleCDSF-serratus_M_contig1086 32164..32585 -
1690962636.2672307-CDS-F-serratus_M_contig1086:32163..325851690962636.2672307-CDS-F-serratus_M_contig1086:32163..32585Fucus serratus maleCDSF-serratus_M_contig1086 32164..32585 -
1622928936.2626698-CDS-F-serratus_M_contig1086:32835..330071622928936.2626698-CDS-F-serratus_M_contig1086:32835..33007Fucus serratus maleCDSF-serratus_M_contig1086 32836..33007 -
1690962636.2768626-CDS-F-serratus_M_contig1086:32835..330071690962636.2768626-CDS-F-serratus_M_contig1086:32835..33007Fucus serratus maleCDSF-serratus_M_contig1086 32836..33007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1086.795.1prot_F-serratus_M_contig1086.795.1Fucus serratus malepolypeptideF-serratus_M_contig1086 32164..33007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1086.795.1

>prot_F-serratus_M_contig1086.795.1 ID=prot_F-serratus_M_contig1086.795.1|Name=mRNA_F-serratus_M_contig1086.795.1|organism=Fucus serratus male|type=polypeptide|length=198bp
VGHQRYTRSLGVDPSIVLIFLATHVQKKGGTGRNILKAIRKSRRFRAPEL
TSTTVCYCRKAGKVRRARTHKTERARPAHICCLGSARRHRTESREERRGE
GNAAVRATVRCWNRTVRKILVSEHGGSDGSKELNRPRGIRSQRDDTKRSS
LESGGGGREKGRRTSTNFKCVLTVMDGFTRNDLRAALELSSMCVGVFD
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mRNA from alignment at F-serratus_M_contig1086:32164..33007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1086.795.1 ID=mRNA_F-serratus_M_contig1086.795.1|Name=mRNA_F-serratus_M_contig1086.795.1|organism=Fucus serratus male|type=mRNA|length=844bp|location=Sequence derived from alignment at F-serratus_M_contig1086:32164..33007- (Fucus serratus male)
GTTGGGCACCAACGCTACACACGGAGTTTAGGGGTGGACCCCTCAATCGT
GTTAATCTTTCTCGCTACACACGTACAGAAGAAGGGCGGAACGGGAAGGA
ATATCTTGAAGGCTATCAGGAAATCACGACGCTTCCGAGCCCCGGAACTT
ACTTCAACTACTGTGTGCTACTGTAAGCACTTGACATGCTGTATGTAATG
AAAAAAAAGTATCCTTCGCGTTAAAAATATTTTGTTGTATGCTGTGCAGG
GCGGACCTTGACCGTCGTCGCAGTCATACGAAGAAGTTCGCCATGTCGAT
TTTTGAATGCGGCGTTGGTGCATGGTCTAGGGCTAAAGCTATGTTTACCT
TTCAGACTCGCCGACGAGAAAACCCGTTCAAAACCACGTCCCTTCGTTCA
ATATACACAATACATATTGCAGGCAGGAAGGCCGGGAAGGTGCGTCGAGC
CAGGACGCACAAAACAGAGCGCGCGAGACCTGCTCATATATGCTGCCTCG
GCTCTGCCAGGCGACACCGTACTGAATCGCGAGAAGAGCGCCGGGGCGAG
GGCAACGCGGCTGTACGAGCAACGGTACGGTGCTGGAATAGGACGGTGCG
CAAAATACTAGTTTCCGAACACGGCGGTTCCGACGGCTCGAAGGAGCTCA
ACCGCCCTCGTGGCATCCGTTCTCAACGTGACGACACGAAACGTAGCTCT
CTCGAGAGCGGCGGTGGTGGCAGGGAGAAGGGAAGACGAACGTCCACGAA
CTTCAAGTGCGTGCTTACCGTGATGGACGGATTCACCCGGAACGACCTTC
GGGCAGCATTGGAGCTTTCGTCCATGTGTGTGGGAGTTTTCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1086:32164..33007-

>mRNA_F-serratus_M_contig1086.795.1 ID=mRNA_F-serratus_M_contig1086.795.1|Name=mRNA_F-serratus_M_contig1086.795.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig1086:32164..33007- (Fucus serratus male)
GTTGGGCACCAACGCTACACACGGAGTTTAGGGGTGGACCCCTCAATCGT
GTTAATCTTTCTCGCTACACACGTACAGAAGAAGGGCGGAACGGGAAGGA
ATATCTTGAAGGCTATCAGGAAATCACGACGCTTCCGAGCCCCGGAACTT
ACTTCAACTACTGTGTGCTACTGTTGGGCACCAACGCTACACACGGAGTT
TAGGGGTGGACCCCTCAATCGTGTTAATCTTTCTCGCTACACACGTACAG
AAGAAGGGCGGAACGGGAAGGAATATCTTGAAGGCTATCAGGAAATCACG
ACGCTTCCGAGCCCCGGAACTTACTTCAACTACTGTGTGCTACTGCAGGA
AGGCCGGGAAGGTGCGTCGAGCCAGGACGCACAAAACAGAGCGCGCGAGA
CCTGCTCATATATGCTGCCTCGGCTCTGCCAGGCGACACCGTACTGAATC
GCGAGAAGAGCGCCGGGGCGAGGGCAACGCGGCTGTACGAGCAACGGTAC
GGTGCTGGAATAGGACGGTGCGCAAAATACTAGTTTCCGAACACGGCGGT
TCCGACGGCTCGAAGGAGCTCAACCGCCCTCGTGGCATCCGTTCTCAACG
TGACGACACGAAACGTAGCTCTCTCGAGAGCGGCGGTGGTGGCAGGGAGA
AGGGAAGACGAACGTCCACGAACTTCAAGTGCGTGCTTACCGTGATGGAC
GGATTCACCCGGAACGACCTTCGGGCAGCATTGGAGCTTTCGTCCATGTG
TGTGGGAGTTTTCGACGCAGGAAGGCCGGGAAGGTGCGTCGAGCCAGGAC
GCACAAAACAGAGCGCGCGAGACCTGCTCATATATGCTGCCTCGGCTCTG
CCAGGCGACACCGTACTGAATCGCGAGAAGAGCGCCGGGGCGAGGGCAAC
GCGGCTGTACGAGCAACGGTACGGTGCTGGAATAGGACGGTGCGCAAAAT
ACTAGTTTCCGAACACGGCGGTTCCGACGGCTCGAAGGAGCTCAACCGCC
CTCGTGGCATCCGTTCTCAACGTGACGACACGAAACGTAGCTCTCTCGAG
AGCGGCGGTGGTGGCAGGGAGAAGGGAAGACGAACGTCCACGAACTTCAA
GTGCGTGCTTACCGTGATGGACGGATTCACCCGGAACGACCTTCGGGCAG
CATTGGAGCTTTCGTCCATGTGTGTGGGAGTTTTCGAC
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