mRNA_F-serratus_M_contig1086.794.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1086.794.1
Unique NamemRNA_F-serratus_M_contig1086.794.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: A0A6H5K314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K314_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.940e-28
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 3
Query:   39 VPVSLRV-LSGQTPACLVEVYLAHTKECSSRSDVIELVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            +P   RV L+     C++E++ AHTK+ +  SD+I+L ++ SDGVWEWFPS+N+E+MSKRFWSILGYD  +M  +P AW   ++P D  + +A F+AH+ + G +PY+  V
Sbjct:   64 IPCKCRVVLALDEDLCVMEMFPAHTKKWTQSSDLIQLTDLASDGVWEWFPSVNFEYMSKRFWSILGYDQHDMDETPLAWMDCLNPDDKEAVLAMFEAHMKSGGASPYHSRV 174          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: D8LP35_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP35_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 6.000e-25
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   39 VPVSLRVLSGQTPAC-LVEVYLAHTKECSSRSDVIELVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            +P  L+ +   TP   +VE++ AHTK     SD+++L ++TSDGVWEWFP LN+E+MS+R+W ILGYD +EM    +AW   I P D    +     HV +KG  PY+  V
Sbjct:   66 IPCRLQKIVNLTPHVHIVEIFPAHTKTWEQSSDLVQLTDLTSDGVWEWFPPLNFEYMSQRYWDILGYDQKEMHEKQNAWMDLIHPDDLQRVLKMSDDHVESKGNVPYHATV 176          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: Q6XLV6_9PHYC (FirrV-1-F1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV6_9PHYC)

HSP 1 Score: 103 bits (257), Expect = 2.570e-23
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:   66 GQTPACLVEVYLAHTKECSSRSDVIELVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLN 365
            G   + +VEV+LAH+K    ++D   L ++ +DG WEW+P+LNYE+MS RFWSILGY   +M  SPDAW+ KI P     A+  F  H  +    PY +N
Sbjct:   76 GAADSTIVEVFLAHSKTTPIKTDFTVLADLATDGFWEWYPALNYEYMSVRFWSILGYAQADMDESPDAWKEKIHPESREFALENFVKHAESNATIPYYVN 175          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: B5LWN0_9PHYC (Putative hybrid sensor histdine kinase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN0_9PHYC)

HSP 1 Score: 102 bits (253), Expect = 9.140e-23
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 3
Query:   39 VPVSLRVLSGQTPACLVEVYLAHTKECSSRSDVIELVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPY 356
            +PV L+ L   T   +V+++LA TK     +D  +L ++ +DG WEW+P ++YE+MS RFWSILGY  ++M  SP +W++KI+  D   A+  ++ H+ ++G  PY
Sbjct:   75 IPVKLQKLWPSTDGFIVQIFLASTKASIHPTDFTKLGDLATDGFWEWYPVVDYEYMSNRFWSILGYSQKDMDESPSSWQAKIEKEDHLIALKTYEDHIQSRGKKPY 180          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: D8LPJ7_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.340e-21
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  129 SDVIELVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            +D   L ++ +DG WEW+P+LNYE+MS+RFWSILGY   EM  SPDAW  KID  D   AMA F  H  ++G  PY L V
Sbjct:    5 TDFTILADLATDGFWEWYPALNYEYMSERFWSILGYSQGEMDESPDAWVEKIDSDDARRAMANFTEHSGSRGAVPYYLTV 84          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: UPI0003F77010 (PAS domain-containing protein n=3 Tax=Teredinibacter turnerae TaxID=2426 RepID=UPI0003F77010)

HSP 1 Score: 79.3 bits (194), Expect = 8.780e-15
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  147 VEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            ++ +SDG W+W+   +YE+MS RFW ILG+D +E P  P AW+  I P D   A+  F+ H+AT+G  P++  V
Sbjct:  150 LDTSSDGFWDWYIQEDYEYMSPRFWEILGFDAQEKPHKPSAWQELIFPEDLQIALGNFQQHIATRGEHPFDQEV 223          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: UPI0003FF1771 (PAS domain-containing protein n=3 Tax=Teredinibacter turnerae TaxID=2426 RepID=UPI0003FF1771)

HSP 1 Score: 76.6 bits (187), Expect = 7.710e-14
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  147 VEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            ++ +SDG W+W+   +YE+MS RFW ILGYD  E P  P AW+  I   D   A+  F+ H+AT+G  P++  V
Sbjct:  150 LDTSSDGFWDWYIQEDYEYMSPRFWEILGYDPHEKPHKPSAWQELIFSDDLQLALGNFQQHIATRGEHPFDQEV 223          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: A0A1Y6BGI3_9PROT (Histidine kinase n=1 Tax=Pseudobacteriovorax antillogorgiicola TaxID=1513793 RepID=A0A1Y6BGI3_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.440e-13
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 3
Query:  144 LVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            L+E T DG W+W    NYE+MS RFW ILG+   E    P  W+  I P D   A+  F  HVA+ G  PY+L V
Sbjct:  139 LIEATYDGYWDWKIQENYEYMSPRFWEILGFQAHEKKHDPKEWQELIFPEDLKRALKSFDRHVASHGADPYSLEV 213          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: C6AR52_TERTT (Histidine kinase n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) TaxID=377629 RepID=C6AR52_TERTT)

HSP 1 Score: 74.3 bits (181), Expect = 4.970e-13
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  147 VEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPYNLNV 368
            ++ +SDG W+W+   +YE+MS RFW ILG+D  E P  P AW+  I P D   A+  F  H+ T+G  P++  V
Sbjct:  150 LDTSSDGFWDWYIQEDYEYMSPRFWEILGFDAHEKPHKPSAWQDLIFPDDLNIALNNFHQHIETRGEHPFDQEV 223          
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Match: A0A7Y2E948_9BACT (PAS domain-containing protein n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A7Y2E948_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 4.290e-12
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  144 LVEMTSDGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAMACFKAHVATKGVAPY 356
            L E  SDG W+W    +YE+MS RFW +LG++  E    P  W+ +I P D   A+  FK HVATKG  P+
Sbjct:   63 LQEHVSDGFWDWRIQEDYEYMSPRFWEMLGFEPHEKAHHPSEWQRQIYPEDLEIALLNFKKHVATKGEHPF 133          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1086.794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K314_9PHAE3.940e-2846.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP35_ECTSI6.000e-2544.14Histidine kinase-like protein n=1 Tax=Ectocarpus s... [more]
Q6XLV6_9PHYC2.570e-2345.00FirrV-1-F1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWN0_9PHYC9.140e-2339.62Putative hybrid sensor histdine kinase n=1 Tax=Fel... [more]
D8LPJ7_ECTSI4.340e-2153.75Histidine kinase-like protein n=1 Tax=Ectocarpus s... [more]
UPI0003F770108.780e-1543.24PAS domain-containing protein n=3 Tax=Teredinibact... [more]
UPI0003FF17717.710e-1443.24PAS domain-containing protein n=3 Tax=Teredinibact... [more]
A0A1Y6BGI3_9PROT1.440e-1345.33Histidine kinase n=1 Tax=Pseudobacteriovorax antil... [more]
C6AR52_TERTT4.970e-1341.89Histidine kinase n=1 Tax=Teredinibacter turnerae (... [more]
A0A7Y2E948_9BACT4.290e-1245.07PAS domain-containing protein n=1 Tax=Candidatus E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1086contigF-serratus_M_contig1086:31128..32075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D8LP35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG0642@1,KOG0519@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size372
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1086.794.1prot_F-serratus_M_contig1086.794.1Fucus serratus malepolypeptideF-serratus_M_contig1086 31128..32064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.5137572-CDS-F-serratus_M_contig1086:31127..312311622928936.5137572-CDS-F-serratus_M_contig1086:31127..31231Fucus serratus maleCDSF-serratus_M_contig1086 31128..31231 -
1690962636.3876195-CDS-F-serratus_M_contig1086:31127..312311690962636.3876195-CDS-F-serratus_M_contig1086:31127..31231Fucus serratus maleCDSF-serratus_M_contig1086 31128..31231 -
1622928936.5301025-CDS-F-serratus_M_contig1086:31521..317551622928936.5301025-CDS-F-serratus_M_contig1086:31521..31755Fucus serratus maleCDSF-serratus_M_contig1086 31522..31755 -
1690962636.4005768-CDS-F-serratus_M_contig1086:31521..317551690962636.4005768-CDS-F-serratus_M_contig1086:31521..31755Fucus serratus maleCDSF-serratus_M_contig1086 31522..31755 -
1622928936.548016-CDS-F-serratus_M_contig1086:32042..320641622928936.548016-CDS-F-serratus_M_contig1086:32042..32064Fucus serratus maleCDSF-serratus_M_contig1086 32043..32064 -
1690962636.4088628-CDS-F-serratus_M_contig1086:32042..320641690962636.4088628-CDS-F-serratus_M_contig1086:32042..32064Fucus serratus maleCDSF-serratus_M_contig1086 32043..32064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.564902-UTR-F-serratus_M_contig1086:32064..320751622928936.564902-UTR-F-serratus_M_contig1086:32064..32075Fucus serratus maleUTRF-serratus_M_contig1086 32065..32075 -
1690962636.4170299-UTR-F-serratus_M_contig1086:32064..320751690962636.4170299-UTR-F-serratus_M_contig1086:32064..32075Fucus serratus maleUTRF-serratus_M_contig1086 32065..32075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1086.794.1

>prot_F-serratus_M_contig1086.794.1 ID=prot_F-serratus_M_contig1086.794.1|Name=mRNA_F-serratus_M_contig1086.794.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MFGRLVEGDVPVSLRVLSGQTPACLVEVYLAHTKECSSRSDVIELVEMTS
DGVWEWFPSLNYEFMSKRFWSILGYDHREMPSSPDAWRSKIDPRDFASAM
ACFKAHVATKGVAPYNLNVS
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mRNA from alignment at F-serratus_M_contig1086:31128..32075-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1086.794.1 ID=mRNA_F-serratus_M_contig1086.794.1|Name=mRNA_F-serratus_M_contig1086.794.1|organism=Fucus serratus male|type=mRNA|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig1086:31128..32075- (Fucus serratus male)
CGGACGACAGGATGTTCGGTCGCCTCGTCGAAGGTGAACATCTTGTATTT GTTGTATTTGTGCATGCGCTGTTAATAGTAAAATGAATGCAACAAGGATA CGAAGTGTACTGCATTAAGGTTGTACCGACAGTTTGTTGTGCTTATGCGC GCAAACCCTGGGCCCCACGGTGGGAGGTAAAACGTTTCTTGTTGCTTTTT CACATGTAGTCTAAGGCGGCTCAGCCAGGCGAACTGATCGTCTGCTGTAC CTCGAAAACGTCGTGCGATCGGTTTGGATTTCCCCTAATCGATCTCGGTT GCTGTAAACGTGTTGATCAGGCGACGTCCCTGTGAGCCTTCGCGTGCTCA GTGGCCAAACGCCTGCTTGCCTCGTCGAGGTGTACCTCGCCCACACCAAG GAGTGCTCCTCGCGCTCAGACGTGATCGAACTGGTCGAGATGACCTCCGA CGGTGTTTGGGAGTGGTTCCCATCGCTGAACTACGAGTTCATGAGTAAGA GGTTCTGGAGCATCCTCGGCTACGACCACCGGGAGATGCCAAGTTCGCCA GACGGTGAGGCTGCAACACGTCCTTTCTACCTCTCTCTCGTCCTCGAGGC GGTGTAAGCCTGCATCTCACTGGTGAACCTCATGCGTCTGTCCCCAGAGA ATGATCAAAGGAAGGGTAGTTTTCCGAAAACTATTGAGGCAAGGAACATA TTTCCCTGTGAGATAATCAAAATCACGCTTTTCACGAACGCGCCCTCTTG CCCGCATGCTCTTTGTTAGCCGAGACCCCCCCCCCCCCCCCCCCCTCCAC ATACACGCACATATATTTGAATCGTGCTTCTCGCGCCGGGCCAGCTTGGA GGAGTAAAATCGATCCAAGAGATTTTGCGAGTGCGATGGCCTGCTTCAAA GCGCACGTGGCTACGAAAGGTGTCGCACCCTACAACCTAAACGTCTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1086:31128..32075-

>mRNA_F-serratus_M_contig1086.794.1 ID=mRNA_F-serratus_M_contig1086.794.1|Name=mRNA_F-serratus_M_contig1086.794.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1086:31128..32075- (Fucus serratus male)
ATGTTCGGTCGCCTCGTCGAAGATGTTCGGTCGCCTCGTCGAAGGCGACG
TCCCTGTGAGCCTTCGCGTGCTCAGTGGCCAAACGCCTGCTTGCCTCGTC
GAGGTGTACCTCGCCCACACCAAGGAGTGCTCCTCGCGCTCAGACGTGAT
CGAACTGGTCGAGATGACCTCCGACGGTGTTTGGGAGTGGTTCCCATCGC
TGAACTACGAGTTCATGAGTAAGAGGTTCTGGAGCATCCTCGGCTACGAC
CACCGGGAGATGCCAAGTTCGCCAGACGGCGACGTCCCTGTGAGCCTTCG
CGTGCTCAGTGGCCAAACGCCTGCTTGCCTCGTCGAGGTGTACCTCGCCC
ACACCAAGGAGTGCTCCTCGCGCTCAGACGTGATCGAACTGGTCGAGATG
ACCTCCGACGGTGTTTGGGAGTGGTTCCCATCGCTGAACTACGAGTTCAT
GAGTAAGAGGTTCTGGAGCATCCTCGGCTACGACCACCGGGAGATGCCAA
GTTCGCCAGACGCTTGGAGGAGTAAAATCGATCCAAGAGATTTTGCGAGT
GCGATGGCCTGCTTCAAAGCGCACGTGGCTACGAAAGGTGTCGCACCCTA
CAACCTAAACGTCTCCCTTGGAGGAGTAAAATCGATCCAAGAGATTTTGC
GAGTGCGATGGCCTGCTTCAAAGCGCACGTGGCTACGAAAGGTGTCGCAC
CCTACAACCTAAACGTCTCC
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