mRNA_F-serratus_M_contig1086.793.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1086.793.1
Unique NamemRNA_F-serratus_M_contig1086.793.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: UPI001E1BA19B (secreted RxLR effector protein 161-like n=2 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA19B)

HSP 1 Score: 103 bits (257), Expect = 3.210e-24
Identity = 61/188 (32.45%), Postives = 98/188 (52.13%), Query Frame = 1
Query:   16 APQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTNLSAWVDADFANCPDTRRSVSGGAVMLE---------------------------EVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            AP  E E   M+ TPY+EAVG LM+ T+TTRP +A+A +Q+ + + NP P HW+  KRI+ YL  T+N G+ +  +  S + L+ + DAD+A   +TRRS +G   +L                            E   E  +L+++   L     + I +  DN+ A+++  +  S  RT+H+D+K
Sbjct:    2 APTNEEEELSMQTTPYQEAVGCLMYLTSTTRPDIAFATNQVARFSHNPGPAHWEGVKRILSYLSGTRNYGLCFSGS--SSSTLTGFTDADYAGDVETRRSTTGYVFLLHGGPVAWCCKRQKCTSLSTTESEYIAACESTREAVWLKRLLIELGLQETNPIPLLCDNQSAVRLVRNPDSHQRTKHIDIK 187          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.230e-23
Identity = 60/176 (34.09%), Postives = 93/176 (52.84%), Query Frame = 1
Query:   58 PYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTN--LSAWVDADFANCPDTRRSVSGGAVM---------------------------LEEVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            PYR  VG+LM+    TRP +A+  HQL +  DNP P HW+AAKR ++YL  T++ G+  G +  S  N  LSA+VD D+ANCPDTRR VSG  ++                           L   + E  +++Q+   L +     +++ +DN+  I +A +     R++H+DV+
Sbjct: 1479 PYRSLVGSLMYLAMGTRPDLAFPLHQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSD-SVHNPFLSAYVDEDYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAQNSEHHGRSKHIDVR 1653          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.260e-23
Identity = 60/176 (34.09%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   58 PYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTN--LSAWVDADFANCPDTRRSVSGGAVM---------------------------LEEVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            PYR  VG+LM+    TRP +A+   QL +  DNP+P HW+AAKR ++YL  T++ G+  G +  S  N  LSA+VDAD+ANCPDTRR VSG  ++                           L   + E  +++Q+   L +     +++ +DN+  I +A +     R++H+DV+
Sbjct: 1774 PYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSD-SVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAHNSEHHRRSKHIDVR 1948          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: UPI001E1BDE4E (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BDE4E)

HSP 1 Score: 101 bits (251), Expect = 4.220e-23
Identity = 65/189 (34.39%), Postives = 95/189 (50.26%), Query Frame = 1
Query:   16 APQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTP-GSCTNLSAWVDADFANCPDTRRSVSG-----------------GAVMLE----------EVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            +PQT+ E EEM+  PY+EAVGAL++ +TTTRP ++YA  Q+ K N NP   HWKA KRI +YL  T+  GI +   P G    +  + DAD A  PD + S SG                 G   L           E   E  ++R     + +   + I +  DN+GAI++A +     R +HV+++
Sbjct:   22 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVDFTDADHAGDPDDQTSTSGCVFICHGGSFSWFSRKQGCTSLSTTEAEFVAGGEAAKEATWIRAFLKEIGKRNLEAIPLFCDNQGAIRVANNPELHRRMKHVELR 210          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 99.4 bits (246), Expect = 4.360e-23
Identity = 63/183 (34.43%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   16 APQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTP-GSCTNLSAWVDADFANCPDTRRSVSG-----------------GAVMLE----------EVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRT 480
            +PQT+ E EEM+  PY+EAVGAL++ +TTTRP ++YA  Q+ K N NP   HWKA KRI +YL  T+  GI +   P G    +  + DAD A  PD + S SG                 G   L           E   E  ++R     + +   + I +  DN+GAI++A +  ++ +T
Sbjct:    2 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDPDDQTSTSGCVFICHGGSFSWFSRKQGCTSLSTTEAEFVAGGEAAKEATWIRAFLKEIGKRNLEAIPLFCDNQGAIRVANNPVANTQT 184          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: A5B7I7_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B7I7_VITVI)

HSP 1 Score: 104 bits (260), Expect = 5.290e-23
Identity = 63/172 (36.63%), Postives = 97/172 (56.40%), Query Frame = 1
Query:   19 PQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTNLSAWVDADFANCPDTRRSVSGGAVMLEEVV------NELRFLR------QVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            P+   E++EM+  PY  AVG+LM+A   TRP +AY    LG+   NP   HW+AAKR+++YL RTK   +TY R       L  + D+DFA C D+RRS SG   +L+E V      N+  +LR      +V   + RP+     +  DN+ A+  + +  SS +++++D+K
Sbjct:  653 PKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLDQ--LELIGYSDSDFAGCQDSRRSTSGYIYLLDEFVACYEASNQGIWLRNFVTGLRVLDGIERPLK----IFCDNKSAVLYSNNNRSSTKSKYIDIK 818          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB)

HSP 1 Score: 100 bits (249), Expect = 6.620e-22
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   16 APQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTP-GSCTNLSAWVDADFANCPDTRRSVSG 324
            +PQT+ E EEM+  PY+EAVGAL++ +TTTRP ++YA  Q+ K N NP   HWKA KRI +YL  T+  GI +   P G    +  + DAD A  PD R S SG
Sbjct:  265 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVGFTDADHAGDPDDRSSTSG 368          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-21
Identity = 60/174 (34.48%), Postives = 90/174 (51.72%), Query Frame = 1
Query:   58 PYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTNLSAWVDADFANCPDTRRSVSGGAVMLEEV---------------------------VNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            PYREAVG+L++A   TRP + YA + + +  DN    HW A K+I +YL  T + GI YG + GS  +L  + DAD+A CPDTRRS SG   ML                              V E  +L+++   L     +++ +  DN+ AIK+A++     RT+H++V+
Sbjct:   32 PYREAVGSLLFAARVTRPDIEYAVNTVSQFVDNYNNTHWSAVKKIFRYLVGTIDCGIIYGAS-GSDESLVGYTDADYAGCPDTRRSRSGYVFMLNNAPVSWCSKKQNIVSLSTTEAEYIALGHGVKEAIWLKRMLKELGIQF-ESVPMNVDNQSAIKLASNPEFHKRTKHIEVR 203          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.580e-21
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   58 PYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTN--LSAWVDADFANCPDTRRSVSGGAVM---------------------------LEEVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            PYR  VG+ M+    TRP +A+   QL +  DNP P HW+AAKR ++YL  T++ G+  G +  S  N  LSA+VDAD+ANCPDTRR VSG  ++                           L   + E  +++Q+   L +     +++ +DN+  I +A +     R++H DV+
Sbjct:  630 PYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSD-SVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAQNSEHHGRSKHFDVR 804          
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Match: A0A075B126_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B126_ROZAC)

HSP 1 Score: 98.2 bits (243), Expect = 1.830e-21
Identity = 58/189 (30.69%), Postives = 94/189 (49.74%), Query Frame = 1
Query:   19 PQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKINDNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTNLSAWVDADFANCPDTRRSVSGGAVMLEE---------------------------VVNELRFLRQVKGSLTRPIHDN--IIVRDDNEGAIKMATSRFSSVRTRHVDVK 498
            P T A+ E+M+V PYR A+G+L++A+  TRP + YA +   K   NP   HW  AKRI++YL  TK+ G+ +  +      +  +VD+D+ +  DTRRSVSG A ML                                E  +++++   ++  I DN  I++ +DN G I +        +T+H+ +K
Sbjct:   62 PTTPADIEDMKVIPYRSAIGSLLYASCGTRPDITYAVNIASKYLSNPGKEHWLLAKRIMRYLIGTKDYGLVFQGSQNKSFIVQGYVDSDWGSDIDTRRSVSGYAFMLNHDLITWKSTRQQTVATSTTEAEYLALGLATQEAMWIKELLTEISPNIIDNEPIVLHEDNNGCIDLTKKTTQHGKTKHISIK 250          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1086.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BA19B3.210e-2432.45secreted RxLR effector protein 161-like n=2 Tax=Da... [more]
A0A6G0X7I6_9STRA2.230e-2334.09Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0W780_9STRA2.260e-2334.09Integrase catalytic domain-containing protein n=3 ... [more]
UPI001E1BDE4E4.220e-2334.39secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001E1BB9B04.360e-2334.43secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A5B7I7_VITVI5.290e-2336.63Integrase catalytic domain-containing protein n=1 ... [more]
UPI001E1BA9BB6.620e-2249.04uncharacterized protein LOC116922675 n=1 Tax=Daphn... [more]
UPI001D00A3951.030e-2134.48secreted RxLR effector protein 161-like n=2 Tax=Co... [more]
A0A6G0W6P6_9STRA1.580e-2133.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A075B126_ROZAC1.830e-2130.69Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1086contigF-serratus_M_contig1086:101..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog67593.Physo131909
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.4679484-CDS-F-serratus_M_contig1086:100..5981622928936.4679484-CDS-F-serratus_M_contig1086:100..598Fucus serratus maleCDSF-serratus_M_contig1086 101..598 -
1690962636.3580108-CDS-F-serratus_M_contig1086:100..5981690962636.3580108-CDS-F-serratus_M_contig1086:100..598Fucus serratus maleCDSF-serratus_M_contig1086 101..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1086.793.1prot_F-serratus_M_contig1086.793.1Fucus serratus malepolypeptideF-serratus_M_contig1086 101..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1086.793.1

>prot_F-serratus_M_contig1086.793.1 ID=prot_F-serratus_M_contig1086.793.1|Name=mRNA_F-serratus_M_contig1086.793.1|organism=Fucus serratus male|type=polypeptide|length=166bp
LSEDDAPQTEAETEEMRVTPYREAVGALMWATTTTRPKVAYAAHQLGKIN
DNPEPVHWKAAKRIIQYLWRTKNVGITYGRTPGSCTNLSAWVDADFANCP
DTRRSVSGGAVMLEEVVNELRFLRQVKGSLTRPIHDNIIVRDDNEGAIKM
ATSRFSSVRTRHVDVK
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mRNA from alignment at F-serratus_M_contig1086:101..598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1086.793.1 ID=mRNA_F-serratus_M_contig1086.793.1|Name=mRNA_F-serratus_M_contig1086.793.1|organism=Fucus serratus male|type=mRNA|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1086:101..598- (Fucus serratus male)
CTGTCCGAGGACGATGCCCCACAGACCGAGGCGGAGACAGAAGAAATGCG TGTAACCCCTTACCGGGAGGCGGTAGGGGCCCTCATGTGGGCTACGACCA CGACCCGCCCTAAGGTCGCGTACGCTGCTCATCAGCTAGGAAAAATTAAC GACAACCCGGAACCAGTACACTGGAAGGCGGCAAAAAGGATAATACAGTA CCTGTGGCGCACGAAGAACGTTGGGATCACCTACGGAAGAACGCCGGGGT CATGCACAAATCTGTCGGCGTGGGTGGACGCCGACTTCGCCAATTGCCCA GACACTCGGCGTTCGGTTTCAGGCGGAGCAGTGATGTTGGAAGAAGTTGT AAATGAGCTCCGTTTCCTTCGACAGGTAAAGGGCTCCTTGACGCGGCCGA TTCATGATAACATCATAGTCAGGGACGATAATGAAGGAGCTATCAAGATG GCGACCAGCCGTTTCAGCAGCGTGCGTACTAGGCACGTCGACGTGAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1086:101..598-

>mRNA_F-serratus_M_contig1086.793.1 ID=mRNA_F-serratus_M_contig1086.793.1|Name=mRNA_F-serratus_M_contig1086.793.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig1086:101..598- (Fucus serratus male)
CTGTCCGAGGACGATGCCCCACAGACCGAGGCGGAGACAGAAGAAATGCG
TGTAACCCCTTACCGGGAGGCGGTAGGGGCCCTCATGTGGGCTACGACCA
CGACCCGCCCTAAGGTCGCGTACGCTGCTCATCAGCTAGGAAAAATTAAC
GACAACCCGGAACCAGTACACTGGAAGGCGGCAAAAAGGATAATACAGTA
CCTGTGGCGCACGAAGAACGTTGGGATCACCTACGGAAGAACGCCGGGGT
CATGCACAAATCTGTCGGCGTGGGTGGACGCCGACTTCGCCAATTGCCCA
GACACTCGGCGTTCGGTTTCAGGCGGAGCAGTGATGTTGGAAGAAGTTGT
AAATGAGCTCCGTTTCCTTCGACAGGTAAAGGGCTCCTTGACGCGGCCGA
TTCATGATAACATCATAGTCAGGGACGATAATGAAGGAGCTATCAAGATG
GCGACCAGCCGTTTCAGCAGCGTGCGTACTAGGCACGTCGACGTGAAACT
GTCCGAGGACGATGCCCCACAGACCGAGGCGGAGACAGAAGAAATGCGTG
TAACCCCTTACCGGGAGGCGGTAGGGGCCCTCATGTGGGCTACGACCACG
ACCCGCCCTAAGGTCGCGTACGCTGCTCATCAGCTAGGAAAAATTAACGA
CAACCCGGAACCAGTACACTGGAAGGCGGCAAAAAGGATAATACAGTACC
TGTGGCGCACGAAGAACGTTGGGATCACCTACGGAAGAACGCCGGGGTCA
TGCACAAATCTGTCGGCGTGGGTGGACGCCGACTTCGCCAATTGCCCAGA
CACTCGGCGTTCGGTTTCAGGCGGAGCAGTGATGTTGGAAGAAGTTGTAA
ATGAGCTCCGTTTCCTTCGACAGGTAAAGGGCTCCTTGACGCGGCCGATT
CATGATAACATCATAGTCAGGGACGATAATGAAGGAGCTATCAAGATGGC
GACCAGCCGTTTCAGCAGCGTGCGTACTAGGCACGTCGACGTGAAA
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