mRNA_F-serratus_M_contig1084.790.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1084.790.1
Unique NamemRNA_F-serratus_M_contig1084.790.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1084.790.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.710e-22
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    1 GNFSTKISLAERERRSGQLLK--SIYLPSE--NQGSAPFGT----RLAAFPEASRQSSGGYWIPEDGEDTLPPPSAYEIEETAFMMKKYNNIMERLRTTGFDEELSDGYKPKIYDLTGG 333
            GN STKISL ER RR+  L    S + P+   ++G   + T    + A FPE SR   GGY++ E   DTLPPPSA+E++E A MMK YN++MERLRTTG DE L +G+ P+IYD T G
Sbjct: 2518 GNCSTKISLEERSRRNRALSAGTSPFFPARYGHRGRRGYRTAQQAKPAQFPEESRLPGGGYFVEEGPNDTLPPPSAFEMQEAAHMMKVYNDMMERLRTTGMDETLPNGFTPRIYDFTDG 2636
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1084.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCG1_9PHAE9.710e-2251.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1084contigF-serratus_M_contig1084:258958..260252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1295
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.757633-CDS-F-serratus_M_contig1084:258957..2593021622928935.757633-CDS-F-serratus_M_contig1084:258957..259302Fucus serratus maleCDSF-serratus_M_contig1084 258958..259302 +
1690962636.0240734-CDS-F-serratus_M_contig1084:258957..2593021690962636.0240734-CDS-F-serratus_M_contig1084:258957..259302Fucus serratus maleCDSF-serratus_M_contig1084 258958..259302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.7719078-UTR-F-serratus_M_contig1084:259302..2602521622928935.7719078-UTR-F-serratus_M_contig1084:259302..260252Fucus serratus maleUTRF-serratus_M_contig1084 259303..260252 +
1690962636.0428147-UTR-F-serratus_M_contig1084:259302..2602521690962636.0428147-UTR-F-serratus_M_contig1084:259302..260252Fucus serratus maleUTRF-serratus_M_contig1084 259303..260252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1084.790.1prot_F-serratus_M_contig1084.790.1Fucus serratus malepolypeptideF-serratus_M_contig1084 258958..259302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1084.790.1

>prot_F-serratus_M_contig1084.790.1 ID=prot_F-serratus_M_contig1084.790.1|Name=mRNA_F-serratus_M_contig1084.790.1|organism=Fucus serratus male|type=polypeptide|length=115bp
GNFSTKISLAERERRSGQLLKSIYLPSENQGSAPFGTRLAAFPEASRQSS
GGYWIPEDGEDTLPPPSAYEIEETAFMMKKYNNIMERLRTTGFDEELSDG
YKPKIYDLTGGPGR*
back to top

mRNA from alignment at F-serratus_M_contig1084:258958..260252+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1084.790.1 ID=mRNA_F-serratus_M_contig1084.790.1|Name=mRNA_F-serratus_M_contig1084.790.1|organism=Fucus serratus male|type=mRNA|length=1295bp|location=Sequence derived from alignment at F-serratus_M_contig1084:258958..260252+ (Fucus serratus male)
GGAAATTTCTCGACAAAAATTTCTCTAGCGGAACGAGAAAGGAGAAGCGG
GCAACTTCTTAAGAGCATATATCTGCCGTCAGAGAACCAAGGCAGTGCTC
CATTTGGAACGCGACTAGCAGCATTCCCCGAGGCGAGCCGGCAGTCTAGC
GGTGGGTACTGGATACCAGAGGACGGGGAAGATACCCTTCCACCGCCATC
CGCGTACGAGATCGAGGAGACCGCGTTCATGATGAAGAAGTACAACAACA
TCATGGAGCGGCTGCGCACGACGGGTTTCGACGAGGAGCTCTCTGACGGC
TACAAGCCGAAGATCTACGACCTGACCGGCGGGCCTGGGCGTTAACGTGC
AGAGAGGACGGAGAGAGGACGTTACGGAATGGGTTAATCCCGGCACGAGT
GGAGCACACGGCGGTGAGGATGATGGGGATCATAAGAGGTATCAAAAGGT
GCGGAGGCATCAAACAACACGACGTGATGTGTATAAACATTTGAGCAAAG
GTGCCGCAGATGGATTCGAACTCTGTCCGTCGGTAGAGGGCACACACTTT
GTCCGTCGGTGGGAGAAACGTTTTGTGTTAGGGGTAGGGTACGACCCGCT
ACATCGGACATGTTGATGGAGTCGTTACACAAGGGGAGTGAAGAAAATAC
TACCGCGTGGACGCATCCTTGGGTGAGGTGGCGGTTAGCGCCTTGATCGT
ATCTTGAACAGTAATTGTACGCTGTGTTTTGCTCAGATGTGCTTTTGGAT
CCTCTGTGTGAACAGCGTGTGTGTGGTACACTATAATAGTGTTTTGTTCA
GATGTGCTTTTCGTGGGCTCAGGCAACGGGTTGTTGTCTTTGGACGGCAG
ATCAAGTGAGGTTCATACTTTCGTTCATACAATGTTTCATACTTTTACCG
CCCCTGGAAGACTCAGCAGACATACAGGCAGTGCTACGTGACTGGTTGAA
TTCTCTTTATATAGTCTAGACCTGCTGCTTCGAGAGCTTTTTGTTTTTTG
TTTGTTCGAGAACACATTTGACGAATATCAAGGCAAACGGTAAATTAAAT
TTGATCATCTGTTTTGAACATGTGTGATGCTGGCGTTCTCGATGTGCTCA
AAATACAGAAAAAAATGGATAGAGGGCTGGTTAGTTATCGCTTACCTGGT
ATGCGTGTGGGCATATTTTACGGTACTGTACCGGAATTTTCAATTTTCTG
TACACGTATGCGCGTGCGTACTTTGACTGTTGTTTGTGGCTATCATTCTG
TGGCTTTGGCCATGGTTGCTCGGTGTGAAATGGGGGAGAACTTGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1084:258958..260252+

>mRNA_F-serratus_M_contig1084.790.1 ID=mRNA_F-serratus_M_contig1084.790.1|Name=mRNA_F-serratus_M_contig1084.790.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig1084:258958..260252+ (Fucus serratus male)
GGAAATTTCTCGACAAAAATTTCTCTAGCGGAACGAGAAAGGAGAAGCGG
GCAACTTCTTAAGAGCATATATCTGCCGTCAGAGAACCAAGGCAGTGCTC
CATTTGGAACGCGACTAGCAGCATTCCCCGAGGCGAGCCGGCAGTCTAGC
GGTGGGTACTGGATACCAGAGGACGGGGAAGATACCCTTCCACCGCCATC
CGCGTACGAGATCGAGGAGACCGCGTTCATGATGAAGAAGTACAACAACA
TCATGGAGCGGCTGCGCACGACGGGTTTCGACGAGGAGCTCTCTGACGGC
TACAAGCCGAAGATCTACGACCTGACCGGCGGGCCTGGGCGTTAAGGAAA
TTTCTCGACAAAAATTTCTCTAGCGGAACGAGAAAGGAGAAGCGGGCAAC
TTCTTAAGAGCATATATCTGCCGTCAGAGAACCAAGGCAGTGCTCCATTT
GGAACGCGACTAGCAGCATTCCCCGAGGCGAGCCGGCAGTCTAGCGGTGG
GTACTGGATACCAGAGGACGGGGAAGATACCCTTCCACCGCCATCCGCGT
ACGAGATCGAGGAGACCGCGTTCATGATGAAGAAGTACAACAACATCATG
GAGCGGCTGCGCACGACGGGTTTCGACGAGGAGCTCTCTGACGGCTACAA
GCCGAAGATCTACGACCTGACCGGCGGGCCTGGGCGTTAA
back to top