mRNA_F-serratus_M_contig1084.789.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1084.789.1
Unique NamemRNA_F-serratus_M_contig1084.789.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1084.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1084contigF-serratus_M_contig1084:258079..258730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size416
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.5875597-CDS-F-serratus_M_contig1084:258078..2582441622928933.5875597-CDS-F-serratus_M_contig1084:258078..258244Fucus serratus maleCDSF-serratus_M_contig1084 258079..258244 +
1690962635.3998275-CDS-F-serratus_M_contig1084:258078..2582441690962635.3998275-CDS-F-serratus_M_contig1084:258078..258244Fucus serratus maleCDSF-serratus_M_contig1084 258079..258244 +
1622928933.60298-CDS-F-serratus_M_contig1084:258481..2587291622928933.60298-CDS-F-serratus_M_contig1084:258481..258729Fucus serratus maleCDSF-serratus_M_contig1084 258482..258729 +
1690962635.4253578-CDS-F-serratus_M_contig1084:258481..2587291690962635.4253578-CDS-F-serratus_M_contig1084:258481..258729Fucus serratus maleCDSF-serratus_M_contig1084 258482..258729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1084.789.1prot_F-serratus_M_contig1084.789.1Fucus serratus malepolypeptideF-serratus_M_contig1084 258079..258729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1084.789.1

>prot_F-serratus_M_contig1084.789.1 ID=prot_F-serratus_M_contig1084.789.1|Name=mRNA_F-serratus_M_contig1084.789.1|organism=Fucus serratus male|type=polypeptide|length=138bp
GEPPASPRGVAESVSSGARKTVELNHPSNGRQKESCPLQHSIAKIPKSTS
TESLKGLASNADRTSLRQKVGNNEELMERTVVPTAKAAVESASSCSASSP
PMSVPECASMSRSSKPIAEAAFLFGSPGQAHAASSSPR
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mRNA from alignment at F-serratus_M_contig1084:258079..258730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1084.789.1 ID=mRNA_F-serratus_M_contig1084.789.1|Name=mRNA_F-serratus_M_contig1084.789.1|organism=Fucus serratus male|type=mRNA|length=652bp|location=Sequence derived from alignment at F-serratus_M_contig1084:258079..258730+ (Fucus serratus male)
GGAGAACCTCCCGCATCTCCGAGAGGAGTGGCAGAATCGGTATCTTCGGG
AGCGAGGAAAACCGTCGAGCTCAACCACCCGTCTAACGGAAGGCAGAAGG
AAAGTTGTCCACTTCAACACTCCATCGCGAAAATTCCCAAGTCTACGTCG
ACAGAATCATTGAAAGGTGTGATCTAAGCAAGCGAAGCGGTTATATAGGT
AGTCAGTGAAGGTCGAAGGCTCTCCTGAATGTCGACTAGCCATCGGACGT
GTTGCCGGTTCTCCACGCTTGCGATATAATTGGTCGGTAATCACAGTTTG
AGTAAGAATTAGTCCACGAGCGATTTCGACCCTGTACTCCCCCACGCTAC
GCGAATCTTACGCCGACGGCTGGTCACAAAAATATCATATCCGAATCCAA
CAGGTTTGGCGTCGAACGCAGATCGCACAAGCCTCAGGCAGAAGGTTGGA
AATAACGAGGAACTTATGGAGCGTACGGTTGTTCCAACGGCTAAAGCGGC
AGTCGAGAGCGCTTCCTCTTGCAGCGCTTCCTCGCCGCCGATGTCCGTGC
CCGAGTGCGCCTCCATGTCGCGAAGTTCGAAGCCTATCGCGGAGGCTGCC
TTCTTATTTGGTTCGCCTGGGCAGGCTCACGCCGCATCGAGTTCCCCTCG
TG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1084:258079..258730+

>mRNA_F-serratus_M_contig1084.789.1 ID=mRNA_F-serratus_M_contig1084.789.1|Name=mRNA_F-serratus_M_contig1084.789.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig1084:258079..258730+ (Fucus serratus male)
GGAGAACCTCCCGCATCTCCGAGAGGAGTGGCAGAATCGGTATCTTCGGG
AGCGAGGAAAACCGTCGAGCTCAACCACCCGTCTAACGGAAGGCAGAAGG
AAAGTTGTCCACTTCAACACTCCATCGCGAAAATTCCCAAGTCTACGTCG
ACAGAATCATTGAAAGGGAGAACCTCCCGCATCTCCGAGAGGAGTGGCAG
AATCGGTATCTTCGGGAGCGAGGAAAACCGTCGAGCTCAACCACCCGTCT
AACGGAAGGCAGAAGGAAAGTTGTCCACTTCAACACTCCATCGCGAAAAT
TCCCAAGTCTACGTCGACAGAATCATTGAAAGGTTTGGCGTCGAACGCAG
ATCGCACAAGCCTCAGGCAGAAGGTTGGAAATAACGAGGAACTTATGGAG
CGTACGGTTGTTCCAACGGCTAAAGCGGCAGTCGAGAGCGCTTCCTCTTG
CAGCGCTTCCTCGCCGCCGATGTCCGTGCCCGAGTGCGCCTCCATGTCGC
GAAGTTCGAAGCCTATCGCGGAGGCTGCCTTCTTATTTGGTTCGCCTGGG
CAGGCTCACGCCGCATCGAGTTCCCCTCGTGTTTGGCGTCGAACGCAGAT
CGCACAAGCCTCAGGCAGAAGGTTGGAAATAACGAGGAACTTATGGAGCG
TACGGTTGTTCCAACGGCTAAAGCGGCAGTCGAGAGCGCTTCCTCTTGCA
GCGCTTCCTCGCCGCCGATGTCCGTGCCCGAGTGCGCCTCCATGTCGCGA
AGTTCGAAGCCTATCGCGGAGGCTGCCTTCTTATTTGGTTCGCCTGGGCA
GGCTCACGCCGCATCGAGTTCCCCTCGT
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