mRNA_F-serratus_M_contig1084.788.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1084.788.1
Unique NamemRNA_F-serratus_M_contig1084.788.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1084.788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1084contigF-serratus_M_contig1084:256903..257529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.6509228-UTR-F-serratus_M_contig1084:256902..2569141622928933.6509228-UTR-F-serratus_M_contig1084:256902..256914Fucus serratus maleUTRF-serratus_M_contig1084 256903..256914 +
1690962635.4404407-UTR-F-serratus_M_contig1084:256902..2569141690962635.4404407-UTR-F-serratus_M_contig1084:256902..256914Fucus serratus maleUTRF-serratus_M_contig1084 256903..256914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.6699705-CDS-F-serratus_M_contig1084:256914..2575291622928933.6699705-CDS-F-serratus_M_contig1084:256914..257529Fucus serratus maleCDSF-serratus_M_contig1084 256915..257529 +
1690962635.4493904-CDS-F-serratus_M_contig1084:256914..2575291690962635.4493904-CDS-F-serratus_M_contig1084:256914..257529Fucus serratus maleCDSF-serratus_M_contig1084 256915..257529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1084.788.1prot_F-serratus_M_contig1084.788.1Fucus serratus malepolypeptideF-serratus_M_contig1084 256915..257529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1084.788.1

>prot_F-serratus_M_contig1084.788.1 ID=prot_F-serratus_M_contig1084.788.1|Name=mRNA_F-serratus_M_contig1084.788.1|organism=Fucus serratus male|type=polypeptide|length=205bp
MLELILSEGESGWPQDYRECLDDLDVAGDGVLSSSVTARSAGSLHLEATA
LPPADASGETNRLTSTGGLRALADVEGTKASEIDKAIMSKSGGIKDDTPP
PSPPTVKTSLACSSDTQAMVSWQLQVDNAATVETPAMEGRETRDEAEVRI
EGAGEILRFPNRRYGAKTAVRPGGGFIESLQKSLVAMDAAKAKTLSPWKE
ETEED
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mRNA from alignment at F-serratus_M_contig1084:256903..257529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1084.788.1 ID=mRNA_F-serratus_M_contig1084.788.1|Name=mRNA_F-serratus_M_contig1084.788.1|organism=Fucus serratus male|type=mRNA|length=627bp|location=Sequence derived from alignment at F-serratus_M_contig1084:256903..257529+ (Fucus serratus male)
GGTGACCTCGCAATGCTGGAGCTGATCTTATCGGAAGGGGAAAGCGGTTG
GCCCCAAGATTACAGGGAATGCCTCGATGACTTGGACGTTGCAGGTGATG
GTGTGCTGTCGTCGAGTGTCACGGCACGATCTGCGGGTTCATTGCATCTC
GAAGCGACGGCATTACCGCCAGCAGACGCCAGCGGTGAGACCAACCGACT
CACCTCGACGGGTGGACTGAGGGCGCTCGCAGACGTGGAAGGGACTAAAG
CCAGCGAAATAGATAAGGCTATCATGTCAAAGAGTGGCGGCATCAAAGAC
GACACGCCACCGCCGTCGCCGCCGACTGTGAAAACGTCGTTGGCTTGCTC
GTCTGATACACAGGCGATGGTCTCGTGGCAGCTGCAGGTCGACAACGCGG
CCACCGTTGAAACTCCAGCCATGGAAGGCAGGGAGACCCGAGATGAGGCT
GAGGTACGGATCGAAGGGGCAGGGGAGATCCTCAGGTTTCCAAACCGACG
GTATGGAGCTAAAACGGCGGTGAGACCAGGAGGGGGGTTTATTGAATCCC
TACAGAAATCGCTCGTCGCGATGGACGCAGCAAAGGCGAAAACACTGTCA
CCTTGGAAGGAAGAGACAGAAGAAGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1084:256903..257529+

>mRNA_F-serratus_M_contig1084.788.1 ID=mRNA_F-serratus_M_contig1084.788.1|Name=mRNA_F-serratus_M_contig1084.788.1|organism=Fucus serratus male|type=CDS|length=1230bp|location=Sequence derived from alignment at F-serratus_M_contig1084:256903..257529+ (Fucus serratus male)
ATGCTGGAGCTGATCTTATCGGAAGGGGAAAGCGGTTGGCCCCAAGATTA
CAGGGAATGCCTCGATGACTTGGACGTTGCAGGTGATGGTGTGCTGTCGT
CGAGTGTCACGGCACGATCTGCGGGTTCATTGCATCTCGAAGCGACGGCA
TTACCGCCAGCAGACGCCAGCGGTGAGACCAACCGACTCACCTCGACGGG
TGGACTGAGGGCGCTCGCAGACGTGGAAGGGACTAAAGCCAGCGAAATAG
ATAAGGCTATCATGTCAAAGAGTGGCGGCATCAAAGACGACACGCCACCG
CCGTCGCCGCCGACTGTGAAAACGTCGTTGGCTTGCTCGTCTGATACACA
GGCGATGGTCTCGTGGCAGCTGCAGGTCGACAACGCGGCCACCGTTGAAA
CTCCAGCCATGGAAGGCAGGGAGACCCGAGATGAGGCTGAGGTACGGATC
GAAGGGGCAGGGGAGATCCTCAGGTTTCCAAACCGACGGTATGGAGCTAA
AACGGCGGTGAGACCAGGAGGGGGGTTTATTGAATCCCTACAGAAATCGC
TCGTCGCGATGGACGCAGCAAAGGCGAAAACACTGTCACCTTGGAAGGAA
GAGACAGAAGAAGACATGCTGGAGCTGATCTTATCGGAAGGGGAAAGCGG
TTGGCCCCAAGATTACAGGGAATGCCTCGATGACTTGGACGTTGCAGGTG
ATGGTGTGCTGTCGTCGAGTGTCACGGCACGATCTGCGGGTTCATTGCAT
CTCGAAGCGACGGCATTACCGCCAGCAGACGCCAGCGGTGAGACCAACCG
ACTCACCTCGACGGGTGGACTGAGGGCGCTCGCAGACGTGGAAGGGACTA
AAGCCAGCGAAATAGATAAGGCTATCATGTCAAAGAGTGGCGGCATCAAA
GACGACACGCCACCGCCGTCGCCGCCGACTGTGAAAACGTCGTTGGCTTG
CTCGTCTGATACACAGGCGATGGTCTCGTGGCAGCTGCAGGTCGACAACG
CGGCCACCGTTGAAACTCCAGCCATGGAAGGCAGGGAGACCCGAGATGAG
GCTGAGGTACGGATCGAAGGGGCAGGGGAGATCCTCAGGTTTCCAAACCG
ACGGTATGGAGCTAAAACGGCGGTGAGACCAGGAGGGGGGTTTATTGAAT
CCCTACAGAAATCGCTCGTCGCGATGGACGCAGCAAAGGCGAAAACACTG
TCACCTTGGAAGGAAGAGACAGAAGAAGAC
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