mRNA_F-serratus_M_contig108.763.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig108.763.1
Unique NamemRNA_F-serratus_M_contig108.763.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:542252..543103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size853
Cds size546
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.1659522-CDS-F-serratus_M_contig108:542251..5427971622928928.1659522-CDS-F-serratus_M_contig108:542251..542797Fucus serratus maleCDSF-serratus_M_contig108 542252..542797 -
1690962633.0799088-CDS-F-serratus_M_contig108:542251..5427971690962633.0799088-CDS-F-serratus_M_contig108:542251..542797Fucus serratus maleCDSF-serratus_M_contig108 542252..542797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.1918905-UTR-F-serratus_M_contig108:542797..5431031622928928.1918905-UTR-F-serratus_M_contig108:542797..543103Fucus serratus maleUTRF-serratus_M_contig108 542798..543103 -
1690962633.0884802-UTR-F-serratus_M_contig108:542797..5431031690962633.0884802-UTR-F-serratus_M_contig108:542797..543103Fucus serratus maleUTRF-serratus_M_contig108 542798..543103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.763.1prot_F-serratus_M_contig108.763.1Fucus serratus malepolypeptideF-serratus_M_contig108 542252..542797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig108.763.1

>prot_F-serratus_M_contig108.763.1 ID=prot_F-serratus_M_contig108.763.1|Name=mRNA_F-serratus_M_contig108.763.1|organism=Fucus serratus male|type=polypeptide|length=182bp
MFVVMNRSEVYFRKRRRFWEGLVEVHRGWTMLMRGCVSLNCSFQLPLPTV
CQGVLACLRCREMSRRSQGREDGAGDVVVCSIGRVRCAPYCSLFCFNVFA
RWLVPISCAAASSTTRDSIYTALCSGDGLEKLYETLGIVRNILSLFHVHL
LLKRYNAFFVENIFCSRCFLIVGRNGACAAFA
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mRNA from alignment at F-serratus_M_contig108:542252..543103-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig108.763.1 ID=mRNA_F-serratus_M_contig108.763.1|Name=mRNA_F-serratus_M_contig108.763.1|organism=Fucus serratus male|type=mRNA|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig108:542252..543103- (Fucus serratus male)
CAGCAGAGAAGACGGGATGCCCGCCTCGCCATCGGGGAGCTTGTCCTCCT
TCACCTTGGGTGTCTCTCACGCGGGGGGGAATGACGGATAAATATGTGTA
ACCGTCTCTATCTCTCTCTGTCTTCCGCGTCATATCGGGTTGGCGTTTCT
CTGACGGGGGGTGGGTCGGTAGGTGCGTTTTGAACATGAGGTATCGGAGT
GGATCTGATACAGTGCTCTTTCGAGGGCGCACATGTTTGTAACGAGACCT
TAGTTTGCTGGCCTGGCTTGAGATTCTCAGGGCAGAGTCCGCGCGCCTGA
TTGCGCATGTTTGTAGTTATGAACCGTAGCGAGGTTTATTTTCGGAAAAG
GCGCCGCTTTTGGGAGGGTTTGGTCGAAGTACACAGAGGATGGACGATGT
TGATGCGGGGATGTGTTTCTCTCAACTGCAGCTTTCAGCTGCCGCTGCCC
ACCGTGTGTCAGGGTGTATTAGCTTGTCTCAGGTGCAGGGAAATGAGTAG
AAGATCGCAGGGGCGCGAGGATGGAGCGGGTGACGTGGTAGTGTGCTCGA
TTGGGCGTGTTAGGTGTGCCCCATATTGTTCTTTGTTTTGTTTTAACGTT
TTCGCGCGTTGGCTTGTACCCATCTCCTGTGCTGCTGCAAGTAGCACGAC
GAGAGACAGTATCTACACGGCACTGTGTAGTGGCGATGGCTTGGAGAAAC
TCTACGAAACCCTGGGGATCGTGCGGAACATTCTATCTCTTTTCCACGTG
CATCTACTCTTAAAACGATACAACGCCTTCTTCGTGGAAAACATTTTTTG
CTCAAGGTGTTTTCTTATTGTGGGGAGAAATGGTGCATGTGCAGCTTTTG
CC
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Coding sequence (CDS) from alignment at F-serratus_M_contig108:542252..543103-

>mRNA_F-serratus_M_contig108.763.1 ID=mRNA_F-serratus_M_contig108.763.1|Name=mRNA_F-serratus_M_contig108.763.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig108:542252..543103- (Fucus serratus male)
ATGTTTGTAGTTATGAACCGTAGCGAGGTTTATTTTCGGAAAAGGCGCCG
CTTTTGGGAGGGTTTGGTCGAAGTACACAGAGGATGGACGATGTTGATGC
GGGGATGTGTTTCTCTCAACTGCAGCTTTCAGCTGCCGCTGCCCACCGTG
TGTCAGGGTGTATTAGCTTGTCTCAGGTGCAGGGAAATGAGTAGAAGATC
GCAGGGGCGCGAGGATGGAGCGGGTGACGTGGTAGTGTGCTCGATTGGGC
GTGTTAGGTGTGCCCCATATTGTTCTTTGTTTTGTTTTAACGTTTTCGCG
CGTTGGCTTGTACCCATCTCCTGTGCTGCTGCAAGTAGCACGACGAGAGA
CAGTATCTACACGGCACTGTGTAGTGGCGATGGCTTGGAGAAACTCTACG
AAACCCTGGGGATCGTGCGGAACATTCTATCTCTTTTCCACGTGCATCTA
CTCTTAAAACGATACAACGCCTTCTTCGTGGAAAACATTTTTTGCTCAAG
GTGTTTTCTTATTGTGGGGAGAAATGGTGCATGTGCAGCTTTTGCCATGT
TTGTAGTTATGAACCGTAGCGAGGTTTATTTTCGGAAAAGGCGCCGCTTT
TGGGAGGGTTTGGTCGAAGTACACAGAGGATGGACGATGTTGATGCGGGG
ATGTGTTTCTCTCAACTGCAGCTTTCAGCTGCCGCTGCCCACCGTGTGTC
AGGGTGTATTAGCTTGTCTCAGGTGCAGGGAAATGAGTAGAAGATCGCAG
GGGCGCGAGGATGGAGCGGGTGACGTGGTAGTGTGCTCGATTGGGCGTGT
TAGGTGTGCCCCATATTGTTCTTTGTTTTGTTTTAACGTTTTCGCGCGTT
GGCTTGTACCCATCTCCTGTGCTGCTGCAAGTAGCACGACGAGAGACAGT
ATCTACACGGCACTGTGTAGTGGCGATGGCTTGGAGAAACTCTACGAAAC
CCTGGGGATCGTGCGGAACATTCTATCTCTTTTCCACGTGCATCTACTCT
TAAAACGATACAACGCCTTCTTCGTGGAAAACATTTTTTGCTCAAGGTGT
TTTCTTATTGTGGGGAGAAATGGTGCATGTGCAGCTTTTGCC
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