mRNA_F-serratus_M_contig108.759.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig108.759.1
Unique NamemRNA_F-serratus_M_contig108.759.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 1.850e-61
Identity = 139/298 (46.64%), Postives = 175/298 (58.72%), Query Frame = 1
Query:    1 MILVYPIGIPVMFAYLLLNRRHKINPFTASTEARP---------VSFDVPVRVFPKHWEATGANAASTDISVMA----TSSTMLSDYRDVDEEAREAAAV----ERPGACVTRQGAPKERFSRRDDSE--------------------------RVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEIVLTMQ 765
            MIL+YPIG+P++FA LLL RR KINP T + +            VS D   R+  +     GA AA+   +  A    +    L+  +D    AR  +AV    E       R     ER    + S                           + REE L+ RA+D DLQ T+FLWEPYEP  YY+ETVECGRRCL+TGALVFV+P+TAGQ  GA +FAF+ LL FEL+RPHLS+ DAWMYRIGCI IFFSNFLGL AK +VSDE+A+SQE +G+LLI VH  MV AI+ +  ++MQ
Sbjct: 1373 MILLYPIGVPMLFAVLLLKRREKINPPTQTLDLAAATGPVLMERVSSDT-ARMENEGSGHPGAAAATPRATPTARGRDSGDIELAGMKDTSRGARRGSAVSVASEGDSQYHRRCSGEGERRPLSNGSSGXXXXXXXXXXXXXXXXXXXXXXGLVQDREEVLENRAQDPDLQSTRFLWEPYEPDNYYYETVECGRRCLLTGALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQ 1669          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.620e-39
Identity = 101/263 (38.40%), Postives = 144/263 (54.75%), Query Frame = 1
Query:    1 MILVYPIGIPVMFAYLLLNRRHKINPFTASTEARPVSFDVPVRVFPKHWEATGANAASTDISVMATSSTMLSDYRDVDEEAREAAAVERPGACVTRQGAPKERFSRRDDSERVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEI-VLTMQAASDSRD 786
            MI+VYPIGIP+++A++L   R  +NP       RP + D  V       + T   A   D S  + +S             R+A      G  V+++  P+E            EE LQKR ++ DL P+ FLW+ ++P  YY+E +ECGRR L+TGAL+F+ P TA Q   AC+FAF SLL FEL+RPHL   D+W+YR+GC+ IF SNFL L  K + + E   S  + G +LI V+  +V A++      T Q   D+R+
Sbjct:  782 MIVVYPIGIPLLYAFILWINRESLNP-----RPRPKATDDDV-------DETTVPAQDADASGWSVAS-------------RKAGGXX-XGEYVSKE-TPEEL-----------EERLQKRRQNPDLVPSMFLWKDFDPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESNRS--ILGGILIAVNVLLVVAVLASTWFATQQTVDDNRE 1004          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.750e-36
Identity = 90/264 (34.09%), Postives = 137/264 (51.89%), Query Frame = 1
Query:    1 MILVYPIGIPVMFAYLLLNRRHKINPFTASTEARPVSFDVPVRVFPKHWEATGANAASTDISVMATSSTMLSDYRDVDEEAREAAAVERPGACVTRQGAPKERFSRRDDSERVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEI-VLTMQAASDSRDS 789
            MI VYPIGIP+++A++L   R  +NP                    + + +TG                      ++D E  E                P+E       +E   ++ L+KR ++ DL P+ FLW+ + P  YY+E +ECGRR L+TGAL+F+ P T  Q   AC+FAF SLL FEL+RPHL   D+W+YR+GC+VIF SNFL L  K + + E + S  + G +++ ++  ++ A++F     T Q+  DSRD+
Sbjct: 1353 MIAVYPIGIPLLYAFILWRNRDSLNP--------------------RAYYSTGL---------------------ELDGEMSE---------------GPRE-------TEEELQDRLEKRRQNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEGSRS--VLGGIMVAINIFLILAVLFSTWFATQQSVDDSRDN 1551          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 8.050e-36
Identity = 94/271 (34.69%), Postives = 138/271 (50.92%), Query Frame = 1
Query:    1 MILVYPIGIPVMFAYLLLNRRHKINPFTASTEARPVSFDVPVRVFPKHWEATGANAASTDISVMATSSTMLSDYRDVDEEAREAAAVERPGACVT-RQGAPKERFSRRDDSERVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEIVLTMQAASDSRDSLVGHLHA 810
            MI+VYP+GIP+++A++L   R  +NP                RV                                            + GA V  R     +R + + +SE + EE L+KR  + DL P+ FLW+ + P  YY+E VECGRR L+TG LVF+ P+TA Q+  AC+FAF+SLL FEL+RPHL   D+W+YR+GC+ IF SNFL L  K + S  D  + ++FG ++I ++  ++ A++     +MQ   D      G L A
Sbjct: 1270 MIMVYPVGIPLLYAFILWQNRESLNP----------------RV--------------------------------------------KTGAVVNPRADGSTDRITYKANSEDL-EEKLEKRRRNPDLIPSMFLWKDFGPEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVD-SGVDG-NHDVFGAIMIGINMFLIMAVLLASWFSMQQTMDEYVVAAGTLLA 1477          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.020e-35
Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 1
Query:  343 EEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEIVLTMQAASDSRDSLVGHLHA 810
            EE L+KR  + DL P+ FLW+ + P  YY+E VECGRR L+TG L+F+ P+TA Q+  AC+FAF+SLL FEL+RPHL   D+W+YR+GC+ IF SNFL L  K + + +   ++++FG ++I ++  ++ A++     +MQ   D      G L A
Sbjct: 1314 EEKLEKRRRNPDLVPSMFLWKDFGPDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDS--NRDVFGWIMIVINLLLIMAVLLASWFSMQQTMDEYAVAAGTLLA 1467          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.430e-34
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  337 VREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEIVLTMQAASDSRDSLV 795
            V EE + +R  D  + PT FLW  Y P  YY+E  EC RR L+TG LVFV+PDT GQ+   C+FAFLSLLAFEL+RPH  + D  +YR GC+VIFF+NFL L  K  V++ D+    ++ V+LI V+     +I +      +A+   R  ++
Sbjct: 1720 VVEEKMNQRRTDRAIAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRHDMM 1872          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.430e-34
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  337 VREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAI 738
            V +E + +R  D  + PT FLW  Y P  YY+E  EC RR L+TG LVF++PDT GQ+   C+FAFLSLLAFEL+RPH  + D  +YR GC+VIFF+NFL L  K  V+  D+   E++ V+LI V+     +I
Sbjct: 1514 VVDEKMNQRRTDRAIAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFLVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSI 1647          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.010e-33
Identity = 88/247 (35.63%), Postives = 126/247 (51.01%), Query Frame = 1
Query:    1 MILVYPIGIPVMFAYLLLNRRHKINPFTASTEARPVSFDVPVRVFPKHWEATGANAASTDISVMATSSTMLSDYRDVDEEAREAAAVERPGACVTRQGAPKERFSRRDDSERVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAII 741
            MILVYPIGIP+++A++L   R  +NP   S EA P              + TG      D++++  +      Y D  EE                                     L++R  + DL P+ FLW+ + P  YY+E +ECGRR L+TG L+F    TA Q   ACIFAF+SLL FEL+RPHL   DAW+YR+GC++IF SNFL L  K + + E   ++   G +LI V+  ++ A++
Sbjct: 1298 MILVYPIGIPLLYAFILWINRESLNPRVRS-EATP--------------QPTGG--VEMDVALVPAN------YGDDLEE------------------------------------RLEQRRNNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEG--NRAALGGILIAVNVFLILAVL 1483          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.200e-32
Identity = 70/168 (41.67%), Postives = 101/168 (60.12%), Query Frame = 1
Query:  304 ERFSRRDDSERVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEIVLTMQAA---SDSRDSLVG 798
            E   +R     V E  +  R +D  + PT FLW  Y P+ YY+E  EC RR L+TG LVF++PDT GQ+  +CIFA LSL+ FEL+RPH+++ D  +YR GC+VI F+NFL L  K+  +D+D+     + V L+ V+     +I F    T +A    S ++D L+G
Sbjct: 1514 EALKKRRGGRHVVERKMTVRDKDQSIAPTSFLWNAYFPKCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAILSLMVFELLRPHVNHIDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACTTAKAMFSRSHAQDMLLG 1681          
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 7.860e-32
Identity = 67/155 (43.23%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  343 EEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECGRRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYRIGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEIVLTMQAA---SDSRDSLVG 798
            E+ +  R +D  + PT FLW  Y P+ YY+E  EC RR L+TG LVF++PDT GQ+  +CIFA LSL+ FEL+RPH++  D  +YR GC+VI F+NFL L  K+  +D+D+     + V L+ V+     +I F    T +A    S ++D L+G
Sbjct: 1252 EQKMSVRDKDQSIAPTSFLWNAYFPKCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAILSLMVFELLRPHVNNLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACTTAKAMFSRSHAQDMLLG 1406          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT7_ECTSI1.850e-6146.64Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JCK8_9PHAE2.620e-3938.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH0_ECTSI1.750e-3634.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH4_ECTSI8.050e-3634.69Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI2.020e-3544.23Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JRA9_9PHAE2.430e-3445.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI4.430e-3449.25Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JS31_9PHAE2.010e-3335.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4A5_9PHAE3.200e-3241.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI7.860e-3243.23Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:484177..487357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue9.3e-25
Seed eggNOG ortholog2880.D7FPF7
Hectar predicted targeting categoryother localisation
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size845
Cds size843
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.621924-CDS-F-serratus_M_contig108:484176..4842541622928929.621924-CDS-F-serratus_M_contig108:484176..484254Fucus serratus maleCDSF-serratus_M_contig108 484177..484254 -
1690962633.8463552-CDS-F-serratus_M_contig108:484176..4842541690962633.8463552-CDS-F-serratus_M_contig108:484176..484254Fucus serratus maleCDSF-serratus_M_contig108 484177..484254 -
1622928929.6374571-CDS-F-serratus_M_contig108:484526..4846401622928929.6374571-CDS-F-serratus_M_contig108:484526..484640Fucus serratus maleCDSF-serratus_M_contig108 484527..484640 -
1690962633.8564308-CDS-F-serratus_M_contig108:484526..4846401690962633.8564308-CDS-F-serratus_M_contig108:484526..484640Fucus serratus maleCDSF-serratus_M_contig108 484527..484640 -
1622928929.6595237-CDS-F-serratus_M_contig108:485119..4851671622928929.6595237-CDS-F-serratus_M_contig108:485119..485167Fucus serratus maleCDSF-serratus_M_contig108 485120..485167 -
1690962633.866272-CDS-F-serratus_M_contig108:485119..4851671690962633.866272-CDS-F-serratus_M_contig108:485119..485167Fucus serratus maleCDSF-serratus_M_contig108 485120..485167 -
1622928929.6767528-CDS-F-serratus_M_contig108:485412..4855371622928929.6767528-CDS-F-serratus_M_contig108:485412..485537Fucus serratus maleCDSF-serratus_M_contig108 485413..485537 -
1690962633.8770328-CDS-F-serratus_M_contig108:485412..4855371690962633.8770328-CDS-F-serratus_M_contig108:485412..485537Fucus serratus maleCDSF-serratus_M_contig108 485413..485537 -
1622928929.6914477-CDS-F-serratus_M_contig108:485780..4858461622928929.6914477-CDS-F-serratus_M_contig108:485780..485846Fucus serratus maleCDSF-serratus_M_contig108 485781..485846 -
1690962633.8883898-CDS-F-serratus_M_contig108:485780..4858461690962633.8883898-CDS-F-serratus_M_contig108:485780..485846Fucus serratus maleCDSF-serratus_M_contig108 485781..485846 -
1622928929.707341-CDS-F-serratus_M_contig108:486206..4862701622928929.707341-CDS-F-serratus_M_contig108:486206..486270Fucus serratus maleCDSF-serratus_M_contig108 486207..486270 -
1690962633.9003446-CDS-F-serratus_M_contig108:486206..4862701690962633.9003446-CDS-F-serratus_M_contig108:486206..486270Fucus serratus maleCDSF-serratus_M_contig108 486207..486270 -
1622928929.767525-CDS-F-serratus_M_contig108:487009..4873571622928929.767525-CDS-F-serratus_M_contig108:487009..487357Fucus serratus maleCDSF-serratus_M_contig108 487010..487357 -
1690962633.9105735-CDS-F-serratus_M_contig108:487009..4873571690962633.9105735-CDS-F-serratus_M_contig108:487009..487357Fucus serratus maleCDSF-serratus_M_contig108 487010..487357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.759.1prot_F-serratus_M_contig108.759.1Fucus serratus malepolypeptideF-serratus_M_contig108 484177..487357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig108.759.1

>prot_F-serratus_M_contig108.759.1 ID=prot_F-serratus_M_contig108.759.1|Name=mRNA_F-serratus_M_contig108.759.1|organism=Fucus serratus male|type=polypeptide|length=281bp
MILVYPIGIPVMFAYLLLNRRHKINPFTASTEARPVSFDVPVRVFPKHWE
ATGANAASTDISVMATSSTMLSDYRDVDEEAREAAAVERPGACVTRQGAP
KERFSRRDDSERVREEALQKRAEDLDLQPTKFLWEPYEPRTYYFETVECG
RRCLMTGALVFVMPDTAGQMTGACIFAFLSLLAFELIRPHLSYNDAWMYR
IGCIVIFFSNFLGLSAKTEVSDEDAESQEMFGVLLIFVHATMVAAIIFEI
VLTMQAASDSRDSLVGHLHARTGSEESPTRR
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mRNA from alignment at F-serratus_M_contig108:484177..487357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig108.759.1 ID=mRNA_F-serratus_M_contig108.759.1|Name=mRNA_F-serratus_M_contig108.759.1|organism=Fucus serratus male|type=mRNA|length=3181bp|location=Sequence derived from alignment at F-serratus_M_contig108:484177..487357- (Fucus serratus male)
ATGATCCTCGTGTACCCAATAGGCATCCCGGTTATGTTCGCCTATTTGCT CCTCAATCGGAGACACAAGATCAATCCCTTTACCGCGTCCACGGAGGCAA GGCCGGTTTCGTTCGATGTCCCGGTGCGGGTTTTCCCTAAACATTGGGAG GCTACGGGCGCGAATGCCGCGTCGACAGATATTTCCGTCATGGCTACCTC GTCAACCATGCTCAGCGACTACAGAGATGTCGACGAAGAGGCTAGGGAAG CGGCTGCTGTAGAGCGGCCGGGAGCGTGTGTGACGAGGCAGGGGGCGCCA AAGGAGCGGTTTTCGAGACGTGACGACAGCGAACGCGTGCGCGAAGAGGT GAGAAGGCGGGTGAACGATACACACGTTCGCGTGGATAAATATAGGACGG TGAGAGTGTAGAAGGAGTAAAGGGGGCGGGGAGGTCAAAATAGAAAGGGG CGTTCAACGGAAGAGGTATAAGGGTCTGTGTGATAGTATGTCCGAGCGGG GAACGATTGAATCATTATTTTACGGGATGATTTGGCATCCTATCCTCCGA TGGGATAATAGGCCAGCTCATCTCGTACATTAGAGTTCGTTCCACTGGGA GAAAAGTGGAAAAATCACCCGCCCCGAATGTAGGAATATATTCGCATACC TACCCGGCAGCCATTTCCTTGAACGAATCGGGAGTAAAAGTAGCAGAGGG TAAGCAGCTTTTGTCCTTGAGGAAGCAGAGCGGGGCGTCTTGAACCACCG AGGTTTGTGGCGGCTGGGGTAAAGAACAGCACACGGTCCTACCCGCGCGT GATCGATAGGCGTCGAGAGGAGGATCCGCTTAAAAGATAGAATACAGAGC ATTCACACACGCTGCGCGGTTAAGCCCGGCTGGGAAATACAAATTTATTT CCGCCGCCCGAGGATGTCTACACGCGAACTGGGTGAATATTGATATGTTT GAGTACCAGTTTGTCATATCGTCGAACTTTTTCTTATACCCCCCGCGTCT CTTTCCTCAGCGCCCTCGTCCCTCTCCCCTCCACCCTTTCACCTTTTCTA TCCCTCGCCGTGCGCTGACTGATGGCGACATCTTCAGGCGTTGCAAAAGC GAGCTGAAGATTTGGACCTGCAACCGACCAAGTTTTTATGGGAGCCCTAC GGTGCGTGATAATTTGCGTAAGGATGTACCTGGTACTAAATTTCCCTCGC GCCCATCGTCATGGGAGTTTGCTAGGCGGCGTGAGCGTACATTTCCAGGA GGAATGTTGTTTGAGTCTCGTTCGTAAATCTGCCGCCTCCCCCCCCCACA CATACATACACCACACCACACCACACCACTCCCAACCAGTACTGGAGATG ACTTCTCCAATGCCATGGGTCCATTGCGCTCGGCGATGAGGCTTGGCCTC CAAGGAGGTGGGATGCTCGCTCTCTCACCCCCGTCTTGTTATCGCTTCAT GCTCATTCCCCATCCCTCATCCTCCCTCCGCGTCGCGAATTCCCTCTGGT GATCTCCGCAGAGCCTCGCACCTACTACTTCGAGACGGTGGAATGTGGTC GACGATGTCTCATGACAGGCGCCTTAGGTAAAAGCTAATAAGAGCCCCTT TTCAGGCATTCCCGACCCGTCCGATTGAACGATGGTACTCAAAAGCGCGA CCACCCACATGTAAGCGCAAGCGATGTATTATTTGCATCGTTGCTTAGCG TTGTATTGCCTTGCCTTGCCTCCACCAACCTACCAAACCTTCCGCCGCTC TTGCGCCTCCCCCCCCCCCCGGCCCCCGATTTGTTTCTCCCGTTGTGCGT CTGGCTCTCGTTTCCTTCAGTTTTCGTCATGCCCGACACGGCTGGTCAGA TGACCGGAGCGTGCATCTTCGCCTTCCTTAGTCTCTTGGCGTTTGAGCTG ATACGGCCGCATCTCTCCTACAATGACGCGTGGATGTACCGCATCGTGAG AAGCACTCTAGCAGTCAGCGACCCTTAAACACACAATTATCGTCTCCGTT TGTTTTTACAAACGATTAGAGCTATGTGCCGGAAGGATGTTCGCTTGTAT ATCACAAGGATGCAATGTCTCATTATTAAATTCGTTTGTGTGTTTGCCCT AACGAGAGTAGTGCCCCCCCCCCCTCCCTCCCTTAACCTAAATAAAACGC CTTCTGCTGCGTTGATTGGTCGCCATTTTGCCATGAACAGGGGTGCATCG TCATCTTCTTCAGCAACTTCTTGGGGCTCTCCGCCAAGGTGCGAGTGGGG TCATTCCTGAAGCTCCCCCGTGTTGTTCTTTGTCCGCCCATGGCTTTGAC ACCATGGCTAGTTTGTCAAAGGCGCGGAAACCGCCATGAATCGTGAAGTA GCGCACATATCGTGGGCGCCGAAGCGTTACCTCAATCATTACGACCTAAG TAGATAACGGGCGAGGCCTCACGGCTACTCCGTGAAGCTCCTCAGGCTTA GTGATACTCGGGAGAGAACCTGTCGTCGAGCGCGTACGCCCCCGAAAACA CCAAGTGTGTGATCTGCGCGCTAGCTGGAGGTCGCCATGGTTTACGTCGG TGGAAGCCACCCTAGTGCTGATCTAGGTCATTATTCTGCCACCGGTCCTG TCTCACTTGGCATTTTTTTCGCGGCCCTCCTTCCAGCCGGCCTCCGTTTA GACCTCTCAGCGTGCTTTGCCGCCGCTCTCGCACGCTCCTGCTTTCGACC AACCCTTTCACTGAAAGACGGAAGTGTCCGATGAAGATGCGGAGAGCCAA GAAATGTTCGGGGTCCTGCTCATCTTCGTTCACGCCACGATGGTCGCGGC AATTATTTTCGAGATCGTACTGACCATGCAGGTATTGGCGGGGATGAAGG CTATTTCCGACGCGGTTGAATCGTTTTATTACTTGTAGAATGTGTCCATG AAGCACCTCGGATGGCGCACCATAAGTCTAATTCTTGCTTTGTCGAGAAC ACCCCCTCCCTCATTGCTAAGCTTTTCTCTCTCCAGTGCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCTCCCACAGGTGCTGACACACTTATCCCT CTCTCGGTTTTGTCGTTGTTTGTGGCTTTTTGGTGGATACGATTCCGTAA CAGGCGGCCTCCGACAGTCGTGATAGTCTTGTGGGCCATCTGCACGCTAG AACAGGATCCGAGGAAAGCCCCACTCGACGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig108:484177..487357-

>mRNA_F-serratus_M_contig108.759.1 ID=mRNA_F-serratus_M_contig108.759.1|Name=mRNA_F-serratus_M_contig108.759.1|organism=Fucus serratus male|type=CDS|length=1686bp|location=Sequence derived from alignment at F-serratus_M_contig108:484177..487357- (Fucus serratus male)
ATGATCCTCGTGTACCCAATAGGCATCCCGGTTATGTTCGCCTATTTGCT
CCTCAATCGGAGACACAAGATCAATCCCTTTACCGCGTCCACGGAGGCAA
GGCCGGTTTCGTTCGATGTCCCGGTGCGGGTTTTCCCTAAACATTGGGAG
GCTACGGGCGCGAATGCCGCGTCGACAGATATTTCCGTCATGGCTACCTC
GTCAACCATGCTCAGCGACTACAGAGATGTCGACGAAGAGGCTAGGGAAG
CGGCTGCTGTAGAGCGGCCGGGAGCGTGTGTGACGAGGCAGGGGGCGCCA
AAGGAGCGGTTTTCGAGACGTGACGACAGCGAACGCGTGCGCGAAGAGAT
GATCCTCGTGTACCCAATAGGCATCCCGGTTATGTTCGCCTATTTGCTCC
TCAATCGGAGACACAAGATCAATCCCTTTACCGCGTCCACGGAGGCAAGG
CCGGTTTCGTTCGATGTCCCGGTGCGGGTTTTCCCTAAACATTGGGAGGC
TACGGGCGCGAATGCCGCGTCGACAGATATTTCCGTCATGGCTACCTCGT
CAACCATGCTCAGCGACTACAGAGATGTCGACGAAGAGGCTAGGGAAGCG
GCTGCTGTAGAGCGGCCGGGAGCGTGTGTGACGAGGCAGGGGGCGCCAAA
GGAGCGGTTTTCGAGACGTGACGACAGCGAACGCGTGCGCGAAGAGGCGT
TGCAAAAGCGAGCTGAAGATTTGGACCTGCAACCGACCAAGTTTTTATGG
GAGCCCTACGGCGTTGCAAAAGCGAGCTGAAGATTTGGACCTGCAACCGA
CCAAGTTTTTATGGGAGCCCTACGAGCCTCGCACCTACTACTTCGAGACG
GTGGAATGTGGTCGACGATGTCTCATGACAGGCGCCTTAGAGCCTCGCAC
CTACTACTTCGAGACGGTGGAATGTGGTCGACGATGTCTCATGACAGGCG
CCTTAGTTTTCGTCATGCCCGACACGGCTGGTCAGATGACCGGAGCGTGC
ATCTTCGCCTTCCTTAGTCTCTTGGCGTTTGAGCTGATACGGCCGCATCT
CTCCTACAATGACGCGTGGATGTACCGCATCTTTTCGTCATGCCCGACAC
GGCTGGTCAGATGACCGGAGCGTGCATCTTCGCCTTCCTTAGTCTCTTGG
CGTTTGAGCTGATACGGCCGCATCTCTCCTACAATGACGCGTGGATGTAC
CGCATCGGGTGCATCGTCATCTTCTTCAGCAACTTCTTGGGGCTCTCCGC
CAAGGGGTGCATCGTCATCTTCTTCAGCAACTTCTTGGGGCTCTCCGCCA
AGACGGAAGTGTCCGATGAAGATGCGGAGAGCCAAGAAATGTTCGGGGTC
CTGCTCATCTTCGTTCACGCCACGATGGTCGCGGCAATTATTTTCGAGAT
CGTACTGACCATGCAGACGGAAGTGTCCGATGAAGATGCGGAGAGCCAAG
AAATGTTCGGGGTCCTGCTCATCTTCGTTCACGCCACGATGGTCGCGGCA
ATTATTTTCGAGATCGTACTGACCATGCAGGCGGCCTCCGACAGTCGTGA
TAGTCTTGTGGGCCATCTGCACGCTAGAACAGGATCCGAGGAAAGCCCCA
CTCGACGCGCGGCCTCCGACAGTCGTGATAGTCTTGTGGGCCATCTGCAC
GCTAGAACAGGATCCGAGGAAAGCCCCACTCGACGC
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