mRNA_F-serratus_M_contig108.757.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig108.757.1
Unique NamemRNA_F-serratus_M_contig108.757.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.080e-25
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  391 ATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684
            A VFV P+TA Q AGA +FAFV LL FEL+RPH+S  D+WMYRIG I IFFSNFLGLM KADVS E+ QSQE + +LLI VHV+M +AI+ Q Y  +Q
Sbjct: 1572 ALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQ 1669          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.980e-20
Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  391 ATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQLQREES 702
            A +F+APHT  Q A ACMFAF SLL FEL+RPH+  ADSW+YR+G ++IF SNFL L++KAD +GE  +S  +   +++ +++ + +A++F  +F  Q   ++S
Sbjct: 1447 ALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEGSRS--VLGGIMVAINIFLILAVLFSTWFATQQSVDDS 1548          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.260e-19
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  391 ATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684
            A +F+APHTA Q A ACMFAF SLL FEL+RPH+  ADSW+YR+G + IF SNFL L+ K D +GE  +S  +   +LI V+V++ VA++   +F  Q
Sbjct:  901 ALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESNRS--ILGGILIAVNVLLVVAVLASTWFATQ 996          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.250e-18
Identity = 48/101 (47.52%), Postives = 74/101 (73.27%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQLQREE 699
            VF++P+TA Q+A ACMFAFVSLL FEL+RPH+   DSW+YR+G + IF SNFL L++K D SG D  + ++F  ++IG+++ + +A++   +F +Q   +E
Sbjct: 1369 VFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVD-SGVDG-NHDVFGAIMIGINMFLIMAVLLASWFSMQQTMDE 1467          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 5.110e-18
Identity = 45/103 (43.69%), Postives = 76/103 (73.79%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQLQREESA 705
            +F++P+TA Q+A ACMFAFVSLL FEL+RPH+   DSW+YR+G + IF SNFL L++K D +G+   ++++F  ++I +++++ +A++   +F +Q   +E A
Sbjct: 1359 IFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDS--NRDVFGWIMIVINLLLIMAVLLASWFSMQQTMDEYA 1459          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7G0A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.850e-16
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAI 657
            VFV P T  Q+A  C+FAF+SLL FE +RPHI   D  +YR G ++IFF+NFL LM+KA+V+  D +  +++S++LI V+V+ F++I
Sbjct:   11 VFVVPDTPGQVAFGCVFAFLSLLAFERLRPHIDHLDMELYRTGCLVIFFTNFLALMIKANVASPDSRGCKVYSIVLIIVNVLFFLSI 97          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.080e-15
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684
            +F A  TA Q A AC+FAFVSLL FEL+RPH+  AD+W+YR+G ++IF SNFL L++K D +GE  ++      +LI V+V + +A++   +F  Q
Sbjct: 1398 IFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAA--LGGILIAVNVFLILAVLSTSWFATQ 1491          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.170e-15
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAI 657
            VF+ P T  Q+A  C+FAF+SLL FEL+RPH    D  +YR G ++IFF+NFL LM+KA+V+  D +  E++SV+LI V+V+ F++I
Sbjct: 1561 VFLVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSI 1647          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.280e-15
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAIIFQVYFGIQ 684
            +F A  TA Q A AC+FAFVSLL FEL+RPH+  AD W+YR+G ++IF SNFL L++K D +GE  ++      +LI V+V + +A++   +F  Q
Sbjct: 1056 IFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAA--LGGILIAVNVFLILAVLSTSWFATQ 1149          
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.040e-15
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  397 VFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQADSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFVAI 657
            VFV P T  Q+A  C+FAF+SLL FEL+RPH    D  +YR G ++IFF+NFL LM+KA+V+  D +   ++SV+LI V+V+ F++I
Sbjct: 1767 VFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSI 1853          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT7_ECTSI1.080e-2565.31Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FRH0_ECTSI4.980e-2046.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JCK8_9PHAE1.260e-1952.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI2.250e-1847.52Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI5.110e-1843.69Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7G0A6_ECTSI5.850e-1649.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS31_9PHAE2.080e-1546.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI2.170e-1550.57Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FRH1_ECTSI3.280e-1546.88Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JRA9_9PHAE5.040e-1550.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:305678..311332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D7FTI5
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size2632
Cds size549
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.4609268-UTR-F-serratus_M_contig108:305677..3059331622928929.4609268-UTR-F-serratus_M_contig108:305677..305933Fucus serratus maleUTRF-serratus_M_contig108 305678..305933 +
1690962633.7294304-UTR-F-serratus_M_contig108:305677..3059331690962633.7294304-UTR-F-serratus_M_contig108:305677..305933Fucus serratus maleUTRF-serratus_M_contig108 305678..305933 +
1622928929.47143-UTR-F-serratus_M_contig108:306285..3063491622928929.47143-UTR-F-serratus_M_contig108:306285..306349Fucus serratus maleUTRF-serratus_M_contig108 306286..306349 +
1690962633.7446535-UTR-F-serratus_M_contig108:306285..3063491690962633.7446535-UTR-F-serratus_M_contig108:306285..306349Fucus serratus maleUTRF-serratus_M_contig108 306286..306349 +
1622928929.483183-UTR-F-serratus_M_contig108:306850..3068811622928929.483183-UTR-F-serratus_M_contig108:306850..306881Fucus serratus maleUTRF-serratus_M_contig108 306851..306881 +
1690962633.752754-UTR-F-serratus_M_contig108:306850..3068811690962633.752754-UTR-F-serratus_M_contig108:306850..306881Fucus serratus maleUTRF-serratus_M_contig108 306851..306881 +
1622928929.5687916-UTR-F-serratus_M_contig108:309571..3099941622928929.5687916-UTR-F-serratus_M_contig108:309571..309994Fucus serratus maleUTRF-serratus_M_contig108 309572..309994 +
1690962633.8284924-UTR-F-serratus_M_contig108:309571..3099941690962633.8284924-UTR-F-serratus_M_contig108:309571..309994Fucus serratus maleUTRF-serratus_M_contig108 309572..309994 +
1622928929.5844703-UTR-F-serratus_M_contig108:310023..3113321622928929.5844703-UTR-F-serratus_M_contig108:310023..311332Fucus serratus maleUTRF-serratus_M_contig108 310024..311332 +
1690962633.8371692-UTR-F-serratus_M_contig108:310023..3113321690962633.8371692-UTR-F-serratus_M_contig108:310023..311332Fucus serratus maleUTRF-serratus_M_contig108 310024..311332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.492895-CDS-F-serratus_M_contig108:306881..3069161622928929.492895-CDS-F-serratus_M_contig108:306881..306916Fucus serratus maleCDSF-serratus_M_contig108 306882..306916 +
1690962633.7742853-CDS-F-serratus_M_contig108:306881..3069161690962633.7742853-CDS-F-serratus_M_contig108:306881..306916Fucus serratus maleCDSF-serratus_M_contig108 306882..306916 +
1622928929.5041516-CDS-F-serratus_M_contig108:307090..3072261622928929.5041516-CDS-F-serratus_M_contig108:307090..307226Fucus serratus maleCDSF-serratus_M_contig108 307091..307226 +
1690962633.7837248-CDS-F-serratus_M_contig108:307090..3072261690962633.7837248-CDS-F-serratus_M_contig108:307090..307226Fucus serratus maleCDSF-serratus_M_contig108 307091..307226 +
1622928929.518439-CDS-F-serratus_M_contig108:307795..3078431622928929.518439-CDS-F-serratus_M_contig108:307795..307843Fucus serratus maleCDSF-serratus_M_contig108 307796..307843 +
1690962633.7942026-CDS-F-serratus_M_contig108:307795..3078431690962633.7942026-CDS-F-serratus_M_contig108:307795..307843Fucus serratus maleCDSF-serratus_M_contig108 307796..307843 +
1622928929.5309718-CDS-F-serratus_M_contig108:308333..3084471622928929.5309718-CDS-F-serratus_M_contig108:308333..308447Fucus serratus maleCDSF-serratus_M_contig108 308334..308447 +
1690962633.8027923-CDS-F-serratus_M_contig108:308333..3084471690962633.8027923-CDS-F-serratus_M_contig108:308333..308447Fucus serratus maleCDSF-serratus_M_contig108 308334..308447 +
1622928929.5423846-CDS-F-serratus_M_contig108:308924..3090681622928929.5423846-CDS-F-serratus_M_contig108:308924..309068Fucus serratus maleCDSF-serratus_M_contig108 308925..309068 +
1690962633.811377-CDS-F-serratus_M_contig108:308924..3090681690962633.811377-CDS-F-serratus_M_contig108:308924..309068Fucus serratus maleCDSF-serratus_M_contig108 308925..309068 +
1622928929.554808-CDS-F-serratus_M_contig108:309499..3095711622928929.554808-CDS-F-serratus_M_contig108:309499..309571Fucus serratus maleCDSF-serratus_M_contig108 309500..309571 +
1690962633.8196645-CDS-F-serratus_M_contig108:309499..3095711690962633.8196645-CDS-F-serratus_M_contig108:309499..309571Fucus serratus maleCDSF-serratus_M_contig108 309500..309571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.757.1prot_F-serratus_M_contig108.757.1Fucus serratus malepolypeptideF-serratus_M_contig108 306882..309571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig108.757.1

>prot_F-serratus_M_contig108.757.1 ID=prot_F-serratus_M_contig108.757.1|Name=mRNA_F-serratus_M_contig108.757.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MRPTLSPDGSPSLATVFVAPHTAVQMAGACMFAFVSLLMFELIRPHISQA
DSWMYRIGSILIFFSNFLGLMVKADVSGEDEQSQELFSVLLIGVHVIMFV
AIIFQVYFGIQLQREESASNDDDDDNLVRGREVKEKNSELRNRRGSIFES
AGGTGRNIQARSSVRSRRTGRSLGPQPDPTNN*
back to top

mRNA from alignment at F-serratus_M_contig108:305678..311332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig108.757.1 ID=mRNA_F-serratus_M_contig108.757.1|Name=mRNA_F-serratus_M_contig108.757.1|organism=Fucus serratus male|type=mRNA|length=5655bp|location=Sequence derived from alignment at F-serratus_M_contig108:305678..311332+ (Fucus serratus male)
CTCGTTATCGAGAACATCGATCACTTCTCGTAGCATCTGTCATGACCAGG GTGCAGATGAGCGTGCGGTACCAAAGGCACAGGCGCAGATGGTGCCACAA GAAGTTAAAACTAGAGACGACGATGGCGGAGGCGATGGTGGCGATGGTGG CGATGGCAGCGACCGTGTCTCGACCGTAGATTTGAAGCGCGTCAGCGAGG ATGGATATGTATCGAGTCTAGGGCCCTCGTTGGCCACCGATGCGCATTGC GAGGATGTGAGAAGTCGAGGAGCGCGTGGGTGTTTCAGTACGGATAGAGG GGGGTTGGGGGAGGGGTCGGAGTGGGAAGGGAATAATCAATCGAGGGGTA TTGATAATGCGCAACAAGTTCTTTATACGAAATTTATTATGGTATATCGC GCATTACGAACAACATGTGCGTCGCGTGGTACGATCAACGAGCGCTGAGA GTGAAGTCGACTTCGCATCCGTAGTGTGATTCAGTACGATTTCTTGTTTT GCTTGATGAGGGTAGTACCCTTGAATGCTTCACCTTTACGACTTCCCCAC ACTACCCCTCTTAACTATTTTGCGCTCTCTGTGCAATGGGGAATCACGGT GCCTGCAGGTTCTTAGAAAGCGTGCTCAAGATTTGGACTTGCAACCAACC AAGTTTCTGTGGGAGCCCTACGGTGCGCGACAGTTGCAATGAGTGTAGGC CGAAAGTGAAATATGTCCTATATCGGCGGTTCTTTCTGCGACTTATTATG AGCATTTCTACGCTCGAGAGAATTGCCGCAGGAGAGGGAATGCGCTAGTA TTTCTGTCTTGTACCCCGTCCACGAGGGGTAGTTATTTTGTTTTCTAAAC AAACCTATACCCCAGATTTTAAGTAGAATGGTACCATAACGGCCCTTGAC AAGGAAATGTTTAACTCTATCTCGCAAGCGGAACGAGTTCTACGCGAGAT AAGTTGGTATATCATGCAAGAGGACGATGGAATCGTCTCCCCCCCTCCCC CCACGCACACCCTCCCAATTTGTTGGAAGACTCGTGTGATGTGTCCTGTT CCGTAGTGCCTGCATGCTACGCCCTTGGTGGAGAGACTGTGAACATCGGA AATGGCGTGTGACCTTTATCTTAATCATGCCGCATTTCTGCGACATTTGT GCGCACTTCGATGGCCCCAACAGAACCTCGCATCTTCTACTACGAGACTA TGGAATGCGGCCGACGCTGTCTCCTGACGGGAGCCCTAGGTGGGAATACA TTTTCCTAGTATAACGAACCCCGTGTATATGAAGCGTACGAAGGGAGCAC GTATTCGTACTCGAGGTCATTTTCCCAACCTCGCCCTGCCGTCACCAAGC CGAACATTCCATCCGACTTGCTTTCTCTTGTTTTCCTAATATCGTCCGAC ACCTCGTACCTCTTCTTGCTACAGTTTTCGTGGCCCCCCACACGGCCGTA CAAATGGCGGGGGCGTGCATGTTCGCCTTCGTCAGCCTCCTGATGTTCGA GCTGATACGGCCTCATATCTCGCAAGCTGATTCGTGGATGTATCGCATCG TGAGATTACTACATGTTTAAAGTTGTCTCGGGGTTTTAACGGAATTGTTC CCCCTCCTGATGCCCGTCTCCTACCTTGTTCATCGGTCACTTCTCTCAAG TATCCCGTCGACTTTTGTTCATTTAATTACCACAGGCCATAAGAGAGGCC TTGGTATGTGCCGGTGGTACAAAAGAAACCCCCCACAGTATGTTCGTATT CACTAAATCACAGAAGCACGAACGCGGACAGGGGAATATTATTTTCCCTG CTCAGCTGACCACGAGCAGGATAGGCAATTTTACCCGGTTGATCCATACT CTTGCTATATGTGTGACCATACATACTACATAGATACATACAACTACACA ACTCGACCATGTCGTGCTTTTTATTCTGCGATACTCATGTTAATCCTCTC GATGGGGGATCAATGCTTGTTGTTTCCACAAATAGTTATGCCTTAGCTGC GACCCTCTGTGAGTGTGTGTTAAGGGGGTGGGGTATAATATTATAGCAGC ATTTACCCTCAAACGAGAATAACATTGATGCCTGCTTAATCGTGTGATTC CTATGTTGCCGTGAGCAGGGTAGCATTTTGATCTTCTTCAGCAACTTCTT GGGTCTCATGGTCAAGGTGCGCAACCGCGCGTCTCGTTTGATTTCTTTCG CTGGACGGGTTGGTCTCGTGAAGCCCGTAGAAGTTACATGCCTTTCTTAC CACAATGATATCCACGGGCGGTATGGTTTAGAGCCCAAGCAAATCACAGG CGCCACGGCATTAACTTTCTACGTTGATCTTGATCGAGAACATTAATCTC TCGGCCAATACTAGTGATGTACCCTCCCCAAGCCGAGTGCTGCTCTGGCG TCCACCCAGAGCGCATGATGTGTCCTCCAAAATCAGATAGGTTAGTTATT TGTCCTGAAGGTCTCGTATGCAACAAATCGGGTCTGTTTTCTCTATAGGT AAAGGCATCTTTGATGATAACAATCGGCTGTGGTTGTCAACACCCCCCTT TCATCGCCGTCCTCACCTCAACCTCCGTTTTTATTCTGCCAAATCCGTGA CCTTGCTTAACGTGGAAATTACTTGTACGCGTGTATGTGTGGCGGGCATT GGCAAGGCGGACGTATCTGGAGAGGATGAACAGAGCCAAGAGCTTTTCAG CGTCTTGCTCATTGGCGTCCACGTCATCATGTTTGTGGCCATTATCTTCC AGGTCTATTTTGGCATTCAGGTATATGGTGTGCGGAGCATATTTTGACCT GAAATCCTGTTTCAGTATGTAGAACACATAACACGAGTGACTAGATCCTT ACCGAATACCCCTAGCTCCTGAACTGATAGAACACTCGCTTCCATATGCT CCGGGACAAACGAAAAATTCCAACGACGTCCTCCCCAAGGGTTCACACAT CTCAAAACGAAAAATAGGTCTTACACAAAGGAGCCGAAATAATATGTCCA CCGGTGTTCGCATTTTAATTGCGACACAGTGGTTCATGTGCAATATTGCG TTCGTCTGTTTCTGGCTTGGAATTTCGAAGTTCCTGCTTCATGTCTCACG GCCTGCGTGATAAAGGTATGCACGCCCCTAGAATGATAAGGAAATAAAAA GAGGTTATGGGGTTGAGACAGTCGTGGCTTAATATGTGGCCCACCCCATT CTTCCATATCTTGGTTTTGATGATGTCCGTGGCTGATTCATTCGCAGCTG CAACGCGAAGAGTCAGCCTCCAATGACGATGACGATGATAACCTCGTTCG CGGTCGGGAAGTGAAGGAAAAAAACAGCGAACTCCGCAATCGGCGTGGCA GCATCTTCGAGAGCGCCGGAGGCACAGGCCGCAACATTCAGGTGGTGGCG TGAGACTCCGAACGCCGTGTTGCCTCGAGAAACGCCAGTTGGGGCACCAT AACTTGGGCTCTCATTTTTACGTCGATCGTTGGCAATCAGCAACGGAGCA GTAGCAATGCCGAGAAAGACGATAAAAAGTGAGGGATGAACGTGTTATTC GCAGGAGATCAAGGTTAATAGGGCCTCAAGAGAATCCCGACCTTGCTTGC CGATATCGTGCAGAACCCGAACCTTGTATCACTGGTTCCCGCTGTTTTCG GCTTTATCGATACGTTGTCTTCAACACGGCCATCATATTCCATAGCCCTT TAAAAGTAGTTTTTGAGAACTACGCTCTGATTGACCGCGACCCCCCAATC TTGCTGGGGCCAAAGATAACTTGAAGCACTCCTTTAACTGCGTCTCTACG TGTCTCGTTCGCGTGTGCACAGGCTCGATCATCAGTTCGATCTCGACGGA CCGGACGCAGTCTTGGGCCCCAACCTGACCCCACAAACAATTAGGGTTTA CCCGGAAGATATCGCCCTCGGGGTGCTCTCATGAGGGAACGCGTCATCAG TGTTGCAGAGAGGACCCCCCGCGCGCACAAGGCCCTCGTCTTGACGCATT AAACGTGGTATCTGAACGTGGAGTTGGACCACAATATTCACGAGCCGCAT TCCAGTCGGCGCCCACAGGTTTCCACGGCACCAGGTCCTCGGTATGTCTC GCCTTCATTCGACAAGGAGGCTGCAGCGGTGGTCTTTGAAGTGAATGTCT GCCAGCCGGCTTCGGGTCTCTCCTCGGGAGCGGTAACCCTGTCTGCGCTG TATATATTTAGTGGTGACAAAATCCAGTACTACAATCGGTACAAGGAATA CGGCAGGCGCTTGAGCCCAGACGAAATGTTCGACAACGAGCGCAAGCCGT TGCACCGGTTGGCGAACGCTGGCGCAATGGAAAGGGGTTCTGGCAGGGCC TTCCCTTCCTTTTTTTACAGCCGCCGCATCAGTCAGTGCCTACGTCAAAC TTGGCAGCACCGCCTGTAATATGTTGCCCCGATTGATTGGTGCAAGTGGC GCAATTTCCCAAGAGTCAGCTTTGAATCGTTTCCATACCCTTTCACCAAC ATATATTGTTATCCGTTGACCACTACCTTGGCGTTGCCCGTGATCCACCG ACGTTCCCGGAACGTGTTTCAAGATTGCCGGCAGCTCCACGAACTCGAGG CCCTCTGATAGATTGGACGGGTCGCTGCGGTCAACGTAGCCGGGGGGACT TGAAGCAAAACATTAGTAGAGCGCAGCGACAGACGTCATCGGTAAGGTTT TGAACAGATCAGTGGCCAACGACTAGCGAGAAAAGCTTATCGCGTTAATT GACTCTCGTTTATGATAGGGCTTCCCGATTGTGGCGTAGTGCGTTGCCTA GACGAGCGCCGTTTGCAGACCTTAATATTGTGTTCATGCTTACATGGTGA AATGTTCACGATTCGAGCTGCGCACGTACGATTGTTCCGGTGCTATTTTT TGGTAATGCCAACACTCACTACGCTGTCGTCTTTGTGCCCCGTGTACGAG TTGATTACGCTAGAGATACTTCAGCTATTTTAGTGTATGCATCTATTACG CTTCCCTGAGGCTTACATATTGCTTAGGATCATTTCGCCTGTCGCTGGTC ATCGTTCGCCTATGAGAGGGTCATGGCCTGGAGTTGGTCCATCTAGTTCA CTCGAGAGTTTGAACACTGACGCCTTTAGTGCTGACGTTGATCGCCGTGT GGTTATTGTCTCAGCCTGTTTTCCTTCAGCATTGGTCTTGTGATTGTGAA GTCTTTTAGATGCCTAAAGATACTTAAGGTATCACAAAAAGGCTCAGCTT CGTATTCCTTACCTGTACGCTCCGTTTTACTTTATATCAATGCCGATATC TTTTTAGAATGGGCGCTCGCCCTTAAGTAGATTGCCGTCGGATATTATGT GGTCGATAGCCAGCTTATCTTGGATATATTTGTCTGCAGTTTGAATTGGA AAATACTGCGGGTTCAATGAACCTTTGTACACTGCTTGAAATATTCCTGC ACCTACGTCACGATCCATCATGCGAGTCGTGTGCAGTCGTAGGGGTGGGG TGGGACCATTGAGCCGTAGCACCTCGCCACTACCCCACCGCTCTCTTCTT CCCTTGGGTATACGTTTTAATTGATGCATGGGCGGGAGGGGAGGTCAATC GATTTTGATTCCAGCTTTGGAATGGGTTATTGGATGAGCGGTAGAGACGT TTGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig108:305678..311332+

>mRNA_F-serratus_M_contig108.757.1 ID=mRNA_F-serratus_M_contig108.757.1|Name=mRNA_F-serratus_M_contig108.757.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig108:305678..311332+ (Fucus serratus male)
ATGCGGCCGACGCTGTCTCCTGACGGGAGCCCTAGATGCGGCCGACGCTG
TCTCCTGACGGGAGCCCTAGTCTTGCTACAGTTTTCGTGGCCCCCCACAC
GGCCGTACAAATGGCGGGGGCGTGCATGTTCGCCTTCGTCAGCCTCCTGA
TGTTCGAGCTGATACGGCCTCATATCTCGCAAGCTGATTCGTGGATGTAT
CGCATCTCTTGCTACAGTTTTCGTGGCCCCCCACACGGCCGTACAAATGG
CGGGGGCGTGCATGTTCGCCTTCGTCAGCCTCCTGATGTTCGAGCTGATA
CGGCCTCATATCTCGCAAGCTGATTCGTGGATGTATCGCATCGGTAGCAT
TTTGATCTTCTTCAGCAACTTCTTGGGTCTCATGGTCAAGGGTAGCATTT
TGATCTTCTTCAGCAACTTCTTGGGTCTCATGGTCAAGGCGGACGTATCT
GGAGAGGATGAACAGAGCCAAGAGCTTTTCAGCGTCTTGCTCATTGGCGT
CCACGTCATCATGTTTGTGGCCATTATCTTCCAGGTCTATTTTGGCATTC
AGGCGGACGTATCTGGAGAGGATGAACAGAGCCAAGAGCTTTTCAGCGTC
TTGCTCATTGGCGTCCACGTCATCATGTTTGTGGCCATTATCTTCCAGGT
CTATTTTGGCATTCAGCTGCAACGCGAAGAGTCAGCCTCCAATGACGATG
ACGATGATAACCTCGTTCGCGGTCGGGAAGTGAAGGAAAAAAACAGCGAA
CTCCGCAATCGGCGTGGCAGCATCTTCGAGAGCGCCGGAGGCACAGGCCG
CAACATTCAGCTGCAACGCGAAGAGTCAGCCTCCAATGACGATGACGATG
ATAACCTCGTTCGCGGTCGGGAAGTGAAGGAAAAAAACAGCGAACTCCGC
AATCGGCGTGGCAGCATCTTCGAGAGCGCCGGAGGCACAGGCCGCAACAT
TCAGGCTCGATCATCAGTTCGATCTCGACGGACCGGACGCAGTCTTGGGC
CCCAACCTGACCCCACAAACAATTAGGCTCGATCATCAGTTCGATCTCGA
CGGACCGGACGCAGTCTTGGGCCCCAACCTGACCCCACAAACAATTAG
back to top