mRNA_F-serratus_M_contig108.754.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig108.754.1
Unique NamemRNA_F-serratus_M_contig108.754.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:200903..202111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1211
Cds size1008
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.0040662-UTR-F-serratus_M_contig108:200902..2011031622928929.0040662-UTR-F-serratus_M_contig108:200902..201103Fucus serratus maleUTRF-serratus_M_contig108 200903..201103 +
1690962633.5235646-UTR-F-serratus_M_contig108:200902..2011031690962633.5235646-UTR-F-serratus_M_contig108:200902..201103Fucus serratus maleUTRF-serratus_M_contig108 200903..201103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.0190916-CDS-F-serratus_M_contig108:201103..2021111622928929.0190916-CDS-F-serratus_M_contig108:201103..202111Fucus serratus maleCDSF-serratus_M_contig108 201104..202111 +
1690962633.532344-CDS-F-serratus_M_contig108:201103..2021111690962633.532344-CDS-F-serratus_M_contig108:201103..202111Fucus serratus maleCDSF-serratus_M_contig108 201104..202111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.754.1prot_F-serratus_M_contig108.754.1Fucus serratus malepolypeptideF-serratus_M_contig108 201104..202111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig108.754.1

>prot_F-serratus_M_contig108.754.1 ID=prot_F-serratus_M_contig108.754.1|Name=mRNA_F-serratus_M_contig108.754.1|organism=Fucus serratus male|type=polypeptide|length=336bp
MRLIMLVVALAACRQKHSLAQTQQNASCSTTVQLIVNGTSSLDAVYSSLD
DAKACGGVDKVSISVEWNGAVEINETIVVSNNVRLRVRGEGFLQDADAIS
LSSNISSGGSGGGSDSTAAMSSVIRGNGNVGLFTVESDGELYISGMALQN
GWGGEPGGGGIYADQGSTVLSETCLWQSLSAAQAGGALTAIGAANITLRG
TNIFSGCSSEKWSGGAIHLQGTTLSAQGDIGFENCQASSEGGGLYMHSTS
RLAVAEGSSISFSNCMAGSESGGYGGGLSSHNSKITVGANANMSFKDNFV
LVKGDGGGLFALGTSIDVSSGANISFVDNHAGDGGG
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mRNA from alignment at F-serratus_M_contig108:200903..202111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig108.754.1 ID=mRNA_F-serratus_M_contig108.754.1|Name=mRNA_F-serratus_M_contig108.754.1|organism=Fucus serratus male|type=mRNA|length=1209bp|location=Sequence derived from alignment at F-serratus_M_contig108:200903..202111+ (Fucus serratus male)
GGAATAAACAGGGCGAAAAACAAGACATTTCATAAAGGGTCCGACAGCCG
CGTCTCTTGTATAGCCCATTGCCACGTGCTACGCAACGAGATCGTCTGCG
GCAAAAGGTCAAGGTTGAAGGACTGCAGGAAGGAAAATAAGCACGTGGTT
GCTTCGTGTATATCCGCTTACTGTGGATGAGGAAAGCCGGGACAGTCTCA
AATGCGGTTGATTATGTTGGTTGTTGCTCTCGCCGCGTGCAGGCAGAAGC
ACTCTCTAGCCCAGACTCAGCAGAATGCGTCTTGCTCAACGACCGTTCAG
CTCATCGTCAATGGGACCTCATCGCTCGATGCGGTGTATTCCTCCCTCGA
TGATGCTAAAGCGTGTGGAGGGGTCGACAAAGTCTCCATCTCGGTTGAAT
GGAACGGGGCGGTCGAAATAAATGAAACTATCGTCGTTTCAAACAACGTT
CGGCTACGGGTTCGAGGCGAGGGTTTCCTGCAAGATGCTGACGCGATTAG
CCTCAGTAGTAACATCAGCAGCGGTGGCAGTGGCGGGGGTTCTGATAGCA
CGGCAGCAATGTCTTCTGTGATAAGAGGTAATGGTAACGTAGGCCTGTTC
ACCGTTGAGTCGGACGGGGAACTCTACATCTCCGGGATGGCTCTCCAAAA
CGGCTGGGGCGGAGAGCCTGGAGGCGGTGGAATATATGCCGATCAAGGCT
CGACGGTCCTCAGCGAGACTTGCCTGTGGCAATCTCTCAGCGCTGCTCAA
GCCGGAGGGGCTTTGACGGCAATAGGTGCGGCCAATATCACTCTGAGAGG
GACCAACATCTTTTCGGGCTGCTCGTCCGAAAAATGGAGCGGGGGAGCCA
TACATCTCCAGGGCACCACGCTCAGCGCGCAGGGGGACATTGGATTCGAA
AACTGTCAAGCCAGTAGTGAAGGTGGGGGGTTATATATGCATAGCACTTC
ACGGCTGGCAGTTGCGGAGGGGTCCTCTATTTCCTTCTCAAATTGTATGG
CTGGATCAGAGTCGGGGGGTTATGGGGGAGGTTTAAGCTCTCACAACTCC
AAGATCACGGTCGGCGCCAACGCTAATATGTCCTTCAAGGATAATTTTGT
CCTTGTTAAGGGCGACGGGGGTGGTCTCTTCGCCCTCGGTACCTCAATTG
ACGTAAGTAGCGGAGCAAATATATCCTTCGTAGACAATCACGCGGGCGAC
GGTGGCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig108:200903..202111+

>mRNA_F-serratus_M_contig108.754.1 ID=mRNA_F-serratus_M_contig108.754.1|Name=mRNA_F-serratus_M_contig108.754.1|organism=Fucus serratus male|type=CDS|length=2016bp|location=Sequence derived from alignment at F-serratus_M_contig108:200903..202111+ (Fucus serratus male)
ATGCGGTTGATTATGTTGGTTGTTGCTCTCGCCGCGTGCAGGCAGAAGCA
CTCTCTAGCCCAGACTCAGCAGAATGCGTCTTGCTCAACGACCGTTCAGC
TCATCGTCAATGGGACCTCATCGCTCGATGCGGTGTATTCCTCCCTCGAT
GATGCTAAAGCGTGTGGAGGGGTCGACAAAGTCTCCATCTCGGTTGAATG
GAACGGGGCGGTCGAAATAAATGAAACTATCGTCGTTTCAAACAACGTTC
GGCTACGGGTTCGAGGCGAGGGTTTCCTGCAAGATGCTGACGCGATTAGC
CTCAGTAGTAACATCAGCAGCGGTGGCAGTGGCGGGGGTTCTGATAGCAC
GGCAGCAATGTCTTCTGTGATAAGAGGTAATGGTAACGTAGGCCTGTTCA
CCGTTGAGTCGGACGGGGAACTCTACATCTCCGGGATGGCTCTCCAAAAC
GGCTGGGGCGGAGAGCCTGGAGGCGGTGGAATATATGCCGATCAAGGCTC
GACGGTCCTCAGCGAGACTTGCCTGTGGCAATCTCTCAGCGCTGCTCAAG
CCGGAGGGGCTTTGACGGCAATAGGTGCGGCCAATATCACTCTGAGAGGG
ACCAACATCTTTTCGGGCTGCTCGTCCGAAAAATGGAGCGGGGGAGCCAT
ACATCTCCAGGGCACCACGCTCAGCGCGCAGGGGGACATTGGATTCGAAA
ACTGTCAAGCCAGTAGTGAAGGTGGGGGGTTATATATGCATAGCACTTCA
CGGCTGGCAGTTGCGGAGGGGTCCTCTATTTCCTTCTCAAATTGTATGGC
TGGATCAGAGTCGGGGGGTTATGGGGGAGGTTTAAGCTCTCACAACTCCA
AGATCACGGTCGGCGCCAACGCTAATATGTCCTTCAAGGATAATTTTGTC
CTTGTTAAGGGCGACGGGGGTGGTCTCTTCGCCCTCGGTACCTCAATTGA
CGTAAGTAGCGGAGCAAATATATCCTTCGTAGACAATCACGCGGGCGACG
GTGGCGGCATGCGGTTGATTATGTTGGTTGTTGCTCTCGCCGCGTGCAGG
CAGAAGCACTCTCTAGCCCAGACTCAGCAGAATGCGTCTTGCTCAACGAC
CGTTCAGCTCATCGTCAATGGGACCTCATCGCTCGATGCGGTGTATTCCT
CCCTCGATGATGCTAAAGCGTGTGGAGGGGTCGACAAAGTCTCCATCTCG
GTTGAATGGAACGGGGCGGTCGAAATAAATGAAACTATCGTCGTTTCAAA
CAACGTTCGGCTACGGGTTCGAGGCGAGGGTTTCCTGCAAGATGCTGACG
CGATTAGCCTCAGTAGTAACATCAGCAGCGGTGGCAGTGGCGGGGGTTCT
GATAGCACGGCAGCAATGTCTTCTGTGATAAGAGGTAATGGTAACGTAGG
CCTGTTCACCGTTGAGTCGGACGGGGAACTCTACATCTCCGGGATGGCTC
TCCAAAACGGCTGGGGCGGAGAGCCTGGAGGCGGTGGAATATATGCCGAT
CAAGGCTCGACGGTCCTCAGCGAGACTTGCCTGTGGCAATCTCTCAGCGC
TGCTCAAGCCGGAGGGGCTTTGACGGCAATAGGTGCGGCCAATATCACTC
TGAGAGGGACCAACATCTTTTCGGGCTGCTCGTCCGAAAAATGGAGCGGG
GGAGCCATACATCTCCAGGGCACCACGCTCAGCGCGCAGGGGGACATTGG
ATTCGAAAACTGTCAAGCCAGTAGTGAAGGTGGGGGGTTATATATGCATA
GCACTTCACGGCTGGCAGTTGCGGAGGGGTCCTCTATTTCCTTCTCAAAT
TGTATGGCTGGATCAGAGTCGGGGGGTTATGGGGGAGGTTTAAGCTCTCA
CAACTCCAAGATCACGGTCGGCGCCAACGCTAATATGTCCTTCAAGGATA
ATTTTGTCCTTGTTAAGGGCGACGGGGGTGGTCTCTTCGCCCTCGGTACC
TCAATTGACGTAAGTAGCGGAGCAAATATATCCTTCGTAGACAATCACGC
GGGCGACGGTGGCGGC
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