mRNA_F-serratus_M_contig108.751.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig108.751.1
Unique NamemRNA_F-serratus_M_contig108.751.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.960e-35
Identity = 115/281 (40.93%), Postives = 132/281 (46.98%), Query Frame = 3 
Query:  570 YAGAMILVYPVGIPATFIYLLLKHREKINP-------------CRYRRLGQLPQRSGRRRS*NVGPASPLVSRFLPIFQHRMRRSPFLAFVVISISGCAGEDMRESRDIGDGDGGDDRTGHRNGVTGERYIFGDLSSCPTDA----------------------NREEVLRKRAQDLDLQPTKFLWEPYEPQNFYYEAVECGRRC**RGALVFVLPNTAGQMAGACIFAFVTLLVFELIRPHLSQTDGWMYP-GLHRHFLQQLLRAHG*GGRVGEHAMSQE 1304
            YA  MIL+YP+G+P  F  LLLK REKINP                 R+     R     S + G A+    R  P  + R      LA +  +  G      R    +     GD +   R    GER    + SS                           +REEVL  RAQD DLQ T+FLWEPYEP N+YYE VECGRRC   GALVFVLPNTAGQ AGA +FAFV LL FEL+RPHLS TD WMY  G    F    L          E A SQE
Sbjct: 1369 YAALMILLYPIGVPMLFAVLLLKRREKINPPTQTLDLAAATGPVLMERVSSDTARMENEGSGHPGAAAA-TPRATPTARGRDSGDIELAGMKDTSRGA-----RRGSAVSVASEGDSQYHRRCSGEGERRPLSNGSSGXXXXXXXXXXXXXXXXXXXXXXGLVQDREEVLENRAQDPDLQSTRFLWEPYEPDNYYYETVECGRRCLLTGALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQE 1643
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BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 4.570e-35
Identity = 92/171 (53.80%), Postives = 119/171 (69.59%), Query Frame = 1 
Query:   82 CVVRSV--QQIKILIVVWQILTQFSDLAEIPYPSYYEHFLGILDVFNFDIPWALSATCLVDGISFYVKLVIVTLAPIILLGALGVTYVGAMCGAGNRLSCYRKPSAGKSSSR*--RRAVGALFGLQLI----STTIFSTFSCDYVEDLEVHMLRADYSISCYDKRHVYCRS 570
            C++R+V  Q++KIL+VVWQILTQFS LAEIPYP  Y+ FL ILD+FNFDI W L+A C+VD I+FY +LV VTL P+ LL  L +TYV AM     R + +   ++ ++  R   R A  AL  L L+    STT+FSTFSCDYVEDL+V +LRADYSISC    H + ++
Sbjct: 1205 CLLRAVPFQKLKILVVVWQILTQFSHLAEIPYPPSYQRFLNILDIFNFDITWPLTAACIVDNITFYHRLVWVTLGPLALLTFLSLTYVIAMH-VHRRRNYFSSRASAEARQRAVVRHASAALLILFLVFSSVSTTVFSTFSCDYVEDLDVSLLRADYSISCDHPDHTFYKA 1374
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BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 8.270e-23
Identity = 72/218 (33.03%), Postives = 101/218 (46.33%), Query Frame = 3 
Query:  564 QIYAGAMILVYPVGIPATFIYLLLKHREKINPCRYRRLGQLPQRSGRRRS*NVGPASPLVSRFLPIFQHRMRRSPFLAFVVISISGCAGEDMRESRDIGDGDGGDDRTGHRNGVTGERYIFGDLSSCPTDANREEVLRKRAQDLDLQPTKFLWEPYEPQNFYYEAVECGRRC**RGALVFVLPNTAGQMAGACIFAFVTLLVFELIRPHLSQTDGWMY 1217
            ++YAG MI+VYP+GIP  + ++L  +RE +NP                                       R  P      +  +    +D        D  G    +    G     Y+     S  T    EE L+KR Q+ DL P+ FLW+ ++P  +YYE +ECGRR    GAL+F+ P+TA Q A AC+FAF +LL FEL+RPHL   D W+Y
Sbjct:  776 KVYAGVMIVVYPIGIPLLYAFILWINRESLNP---------------------------------------RPRPKATDDDVDETTVPAQDA-------DASGWSVASRKAGGXXXGEYV-----SKETPEELEERLQKRRQNPDLVPSMFLWKDFDPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLY 942
[Close]
BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.260e-22
Identity = 72/218 (33.03%), Postives = 99/218 (45.41%), Query Frame = 3 
Query:  564 QIYAGAMILVYPVGIPATFIYLLLKHREKINPCRYRRLGQLPQRSGRRRS*NVGPASPLVSRFLPIFQHRMRRSPFLAFVVISISGCAGEDMRESRDIGDGDGGDDRTGHRNGVTGERYIFGDLSSCPTDANREEVLRKRAQDLDLQPTKFLWEPYEPQNFYYEAVECGRRC**RGALVFVLPNTAGQMAGACIFAFVTLLVFELIRPHLSQTDGWMY 1217
            ++YAG MI+VYPVGIP  + ++L ++RE +NP                    V   + +  R                                       DG  DR  ++                    + EE L KR ++ DL P+ FLW+ + P+ +YYE VECGRR    G LVF+ PNTA Q+A AC+FAFV+LL FEL+RPHL   D W+Y
Sbjct: 1264 KVYAGVMIMVYPVGIPLLYAFILWQNRESLNP-------------------RVKTGAVVNPR--------------------------------------ADGSTDRITYK----------------ANSEDLEEKLEKRRRNPDLIPSMFLWKDFGPEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLY 1408
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BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.000e-20
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 3 
Query:  963 EEVLRKRAQDLDLQPTKFLWEPYEPQNFYYEAVECGRRC**RGALVFVLPNTAGQMAGACIFAFVTLLVFELIRPHLSQTDGWMY 1217
            EE L KR ++ DL P+ FLW+ + P  +YYE VECGRR    G L+F+ PNTA Q+A AC+FAFV+LL FEL+RPHL   D W+Y
Sbjct: 1314 EEKLEKRRRNPDLVPSMFLWKDFGPDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLY 1398
[Close]
BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.360e-20
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1 
Query:   94 SVQQIKILIVVWQILTQFSDLAEIPYPSYYEHFLGILDVFNFDIPWALSATCLVDGISFYVKLVIVTLAPIILLGALGVTYVGAMCGAGNRLSCYRKPSAGKSSSR*-RRAVGALFGLQL-----ISTTIFSTFSCDYVEDLEVHMLRADYSISCYDKRH 555
            S + +KI++VVWQILTQFSD+A + YP  Y+ FL ++DV NFDI W +SA C+VD   F+  L+  T+ PII++G LG TY  A          YR   + ++ +R  R+ V A+  +       +S+T+F  F CD + D   + LRADYSI C   +H
Sbjct:  700 SFRSLKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDIGWVISAGCVVD-FDFHDHLLTATIGPIIVVGVLGATYAAAS---------YRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADSNSY-LRADYSIQCSSTKH 848
[Close]
BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 8.850e-20
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 3 
Query:  921 IFGDLSSCPTDANRE--EVLRKRAQDLDLQPTKFLWEPYEPQNFYYEAVECGRRC**RGALVFVLPNTAGQMAGACIFAFVTLLVFELIRPHLSQTDGWMY 1217
            + G++S  P +   E  + L KR Q+ DL P+ FLW+ + P  +YYE +ECGRR    GAL+F+ P+T  Q A AC+FAF +LL FEL+RPHL   D W+Y
Sbjct: 1388 LDGEMSEGPRETEEELQDRLEKRRQNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLY 1488
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BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.010e-18
Identity = 70/218 (32.11%), Postives = 93/218 (42.66%), Query Frame = 3 
Query:  564 QIYAGAMILVYPVGIPATFIYLLLKHREKINPCRYRRLGQLPQRSGRRRS*NVGPASPLVSRFLPIFQHRMRRSPFLAFVVISISGCAGEDMRESRDIGDGDGGDDRTGHRNGVTGERYIFGDLSSCPTDANREEVLRKRAQDLDLQPTKFLWEPYEPQNFYYEAVECGRRC**RGALVFVLPNTAGQMAGACIFAFVTLLVFELIRPHLSQTDGWMY 1217
            +IYAG MILVYP+GIP  + ++L  +RE +NP    R    PQ +G                              +   V  +    G+D+                                         EE L +R  + DL P+ FLW+ + P  +YYE +ECGRR    G L+F    TA Q A ACIFAFV+LL FEL+RPHL   D W+Y
Sbjct: 1292 RIYAGIMILVYPIGIPLLYAFILWINRESLNPRV--RSEATPQPTGG-----------------------------VEMDVALVPANYGDDL-----------------------------------------EERLEQRRNNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLY 1437
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BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.430e-18
Identity = 63/161 (39.13%), Postives = 97/161 (60.25%), Query Frame = 1 
Query:   97 VQQIKILIVVWQILTQFSDLAEIPYPSYYEHFLGILDVFNFDIPWALSATCLVDGISFYVKLVIVTLAPIILLGALGVTYVGAMCGAGNRLSCYRKPSAG---KSSSR*RRAVGALFGLQL-----ISTTIFSTFSCDYVEDLEVHMLRADYSISCYDKRH 555
            VQ +KI++VVWQILTQF+D+A I YP  Y+ FL  +DV NFD+  AL+A CL   I F+ +L++ TL P++ +G L +TY         R++  R  +AG    + +   + + AL  L       +S+T+F TF+C+ ++D  +  LR DY+I C D +H
Sbjct:  713 VQTLKIIVVVWQILTQFADVANITYPQAYQDFLSAIDVVNFDLGSALAAGCLWPDIDFHDRLLLGTLGPLVAVGFLVMTY---------RVAVRRNGTAGGQTPADNTRHKHLSALLLLTFLIYSSVSSTVFQTFACETLDD-GIEYLRVDYTIHCTDAKH 863
[Close]
BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.090e-18
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = 1 
Query:   97 VQQIKILIVVWQILTQFSDLAEIPYPSYYEHFLGILDVFNFDIPWALSATCLVDGISFYVKLVIVTLAPIILLGALGVTYVGAMCGAGNRLSCYRKPSAGKSSSR*RRAVGALFGLQLI----STTIFSTFSCDYVEDLEVHMLRADYSISCYDKRH 555
            VQ +KI++VVWQILTQF+D A + YP  Y+ FL  +DV NFDI   L+  CL   + F+ +L++ T+ P+++ G L +TY     G   R       + G    R +     LF   L+    S+T+F TF+C+ ++D +V  LRADY I C D +H
Sbjct:  387 VQSLKIIVVVWQILTQFADTANVTYPGLYQDFLSAIDVINFDIGSVLAVGCLWYEVDFHDRLLVNTIGPLVVAGFLAMTY-----GIVLRRYSASGGTGGVEKIRHKHQTALLFLTFLVYSSVSSTVFQTFACETLDD-DVEYLRADYRIHCTDAKH 537
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig108.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT7_ECTSI2.960e-3540.93Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE4.570e-3553.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK8_9PHAE8.270e-2333.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI2.260e-2233.03Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI1.000e-2056.47Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRV1_ECTSI2.360e-2041.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRH0_ECTSI8.850e-2047.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JS31_9PHAE1.010e-1832.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE1.430e-1839.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAD4_9PHAE3.090e-1838.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig108contigF-serratus_M_contig108:106284..115045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D7FRV1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons13
Model size4250
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig108.751.1prot_F-serratus_M_contig108.751.1Fucus serratus malepolypeptideF-serratus_M_contig108 106284..108026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5385182-CDS-F-serratus_M_contig108:106283..1064041622928928.5385182-CDS-F-serratus_M_contig108:106283..106404Fucus serratus maleCDSF-serratus_M_contig108 106284..106404 +
1690962633.2492537-CDS-F-serratus_M_contig108:106283..1064041690962633.2492537-CDS-F-serratus_M_contig108:106283..106404Fucus serratus maleCDSF-serratus_M_contig108 106284..106404 +
1622928928.5541134-CDS-F-serratus_M_contig108:107010..1070331622928928.5541134-CDS-F-serratus_M_contig108:107010..107033Fucus serratus maleCDSF-serratus_M_contig108 107011..107033 +
1690962633.2666023-CDS-F-serratus_M_contig108:107010..1070331690962633.2666023-CDS-F-serratus_M_contig108:107010..107033Fucus serratus maleCDSF-serratus_M_contig108 107011..107033 +
1622928928.566895-CDS-F-serratus_M_contig108:107561..1076371622928928.566895-CDS-F-serratus_M_contig108:107561..107637Fucus serratus maleCDSF-serratus_M_contig108 107562..107637 +
1690962633.2755506-CDS-F-serratus_M_contig108:107561..1076371690962633.2755506-CDS-F-serratus_M_contig108:107561..107637Fucus serratus maleCDSF-serratus_M_contig108 107562..107637 +
1622928928.5782049-CDS-F-serratus_M_contig108:107832..1080261622928928.5782049-CDS-F-serratus_M_contig108:107832..108026Fucus serratus maleCDSF-serratus_M_contig108 107833..108026 +
1690962633.2853396-CDS-F-serratus_M_contig108:107832..1080261690962633.2853396-CDS-F-serratus_M_contig108:107832..108026Fucus serratus maleCDSF-serratus_M_contig108 107833..108026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5879407-UTR-F-serratus_M_contig108:108026..1080511622928928.5879407-UTR-F-serratus_M_contig108:108026..108051Fucus serratus maleUTRF-serratus_M_contig108 108027..108051 +
1690962633.2957003-UTR-F-serratus_M_contig108:108026..1080511690962633.2957003-UTR-F-serratus_M_contig108:108026..108051Fucus serratus maleUTRF-serratus_M_contig108 108027..108051 +
1622928928.5973513-UTR-F-serratus_M_contig108:108401..1085281622928928.5973513-UTR-F-serratus_M_contig108:108401..108528Fucus serratus maleUTRF-serratus_M_contig108 108402..108528 +
1690962633.3053331-UTR-F-serratus_M_contig108:108401..1085281690962633.3053331-UTR-F-serratus_M_contig108:108401..108528Fucus serratus maleUTRF-serratus_M_contig108 108402..108528 +
1622928928.6086018-UTR-F-serratus_M_contig108:109194..1095961622928928.6086018-UTR-F-serratus_M_contig108:109194..109596Fucus serratus maleUTRF-serratus_M_contig108 109195..109596 +
1690962633.3128903-UTR-F-serratus_M_contig108:109194..1095961690962633.3128903-UTR-F-serratus_M_contig108:109194..109596Fucus serratus maleUTRF-serratus_M_contig108 109195..109596 +
1622928928.6200688-UTR-F-serratus_M_contig108:110067..1101311622928928.6200688-UTR-F-serratus_M_contig108:110067..110131Fucus serratus maleUTRF-serratus_M_contig108 110068..110131 +
1690962633.320814-UTR-F-serratus_M_contig108:110067..1101311690962633.320814-UTR-F-serratus_M_contig108:110067..110131Fucus serratus maleUTRF-serratus_M_contig108 110068..110131 +
1622928928.6323109-UTR-F-serratus_M_contig108:110292..1103581622928928.6323109-UTR-F-serratus_M_contig108:110292..110358Fucus serratus maleUTRF-serratus_M_contig108 110293..110358 +
1690962633.3295364-UTR-F-serratus_M_contig108:110292..1103581690962633.3295364-UTR-F-serratus_M_contig108:110292..110358Fucus serratus maleUTRF-serratus_M_contig108 110293..110358 +
1622928928.6454146-UTR-F-serratus_M_contig108:110565..1106851622928928.6454146-UTR-F-serratus_M_contig108:110565..110685Fucus serratus maleUTRF-serratus_M_contig108 110566..110685 +
1690962633.34315-UTR-F-serratus_M_contig108:110565..1106851690962633.34315-UTR-F-serratus_M_contig108:110565..110685Fucus serratus maleUTRF-serratus_M_contig108 110566..110685 +
1622928928.6625082-UTR-F-serratus_M_contig108:110999..1110501622928928.6625082-UTR-F-serratus_M_contig108:110999..111050Fucus serratus maleUTRF-serratus_M_contig108 111000..111050 +
1690962633.3565648-UTR-F-serratus_M_contig108:110999..1110501690962633.3565648-UTR-F-serratus_M_contig108:110999..111050Fucus serratus maleUTRF-serratus_M_contig108 111000..111050 +
1622928928.6832085-UTR-F-serratus_M_contig108:111650..1117611622928928.6832085-UTR-F-serratus_M_contig108:111650..111761Fucus serratus maleUTRF-serratus_M_contig108 111651..111761 +
1690962633.3663414-UTR-F-serratus_M_contig108:111650..1117611690962633.3663414-UTR-F-serratus_M_contig108:111650..111761Fucus serratus maleUTRF-serratus_M_contig108 111651..111761 +
1622928928.7004201-UTR-F-serratus_M_contig108:111953..1122261622928928.7004201-UTR-F-serratus_M_contig108:111953..112226Fucus serratus maleUTRF-serratus_M_contig108 111954..112226 +
1690962633.3797112-UTR-F-serratus_M_contig108:111953..1122261690962633.3797112-UTR-F-serratus_M_contig108:111953..112226Fucus serratus maleUTRF-serratus_M_contig108 111954..112226 +
1622928928.7214625-UTR-F-serratus_M_contig108:112449..1150451622928928.7214625-UTR-F-serratus_M_contig108:112449..115045Fucus serratus maleUTRF-serratus_M_contig108 112450..115045 +
1690962633.3942988-UTR-F-serratus_M_contig108:112449..1150451690962633.3942988-UTR-F-serratus_M_contig108:112449..115045Fucus serratus maleUTRF-serratus_M_contig108 112450..115045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig108.751.1

>prot_F-serratus_M_contig108.751.1 ID=prot_F-serratus_M_contig108.751.1|Name=mRNA_F-serratus_M_contig108.751.1|organism=Fucus serratus male|type=polypeptide|length=138bp
LQRKQKTNRTKEHVRDIWRKQCPSALACVVRSVQQIKILIVVWQILTQFS
DLAEIPYPSYYEHFLGILDVFNFDIPWALSATCLVDGISFYVKLVIVTLA
PIILLGALGVTYVGAMCGAGNRLSCYRKPSAGKSSSR*
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mRNA from alignment at F-serratus_M_contig108:106284..115045+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig108.751.1 ID=mRNA_F-serratus_M_contig108.751.1|Name=mRNA_F-serratus_M_contig108.751.1|organism=Fucus serratus male|type=mRNA|length=8762bp|location=Sequence derived from alignment at F-serratus_M_contig108:106284..115045+ (Fucus serratus male)
CTTCAACGCAAACAGAAGACCAACAGGACGAAAGAGCACGTCCGAGACAT
ATGGCGAAAACAATGTCCCTCGGCGCTCGCGTGCGTCGTGCGATCCGTTC
AACAAATCAAGATTCTGATAGGCGAGAATACGCAGTAGAATACTGCGTGT
TGTTAATAATACTTAATAATTATGTTGAACACAAACACATCATTCGGTCC
TGTCGTACGAACCATTCTAAGCTACTTGTATTACCCCCTCTCCCCTGGAA
ATCACTATTGTCTCGAAAATATATCACGAGACGTGACAAAGTTACAACTT
CTACAGTTCTTGTGTATTATGTGTATAATAGCGTATGTATGTACGACAAC
CATCACCCTCTGTGGCGTGTGGTTTTGTTTACGGCTACTAATCATGTTGG
GACTAGAGACTTGTCTACTATACTGTTTCGTGTTCTGTTGATCTACGGGG
CAAGTTGTTCTCGTTATTACTCATAGTGCAGTGTTGGTGTGTAGAGTACC
AGCCATCCAACGCCGAATATGCCCGCGCACCGCACCACTCCCGGGTATCT
TCTCAACCGTTTTCCTTGCCTTCATTTTGTCGCTCGTTCGATTCCCGGGG
GACTCTCGTCGGATGAACGCCGTCAAACTCCAACGTCCGACGCCCACATT
ATCATCGACGGAAACGTTGTATTTGGCTGTCGACCCGCTGGGGCTACTAA
ACCTATCGCTCTCGCTCGATGTAACAGTCGTGTGGCAGATCCTGACGCAG
GTGTGCCGCCTTTCTCTCGAACTAAAGGGGTACGTAAATATTGAACGCCA
ACAGCAGTAGATGTTGGGGGTTTCCACACTTCCCCCTCCTCGGTTGTCGA
GGAAATCCGAGAGCATCGAACACGGAGGCCACATCACCATGTGCGGTGCA
TTCGTCTTTCCGACGATGGTTCTTCGTCAGCACCGACTGAAATGATAAGG
GTTAGACATCCGCAACCTTATTTGCCTCTACTGCCGTTCTTGTAGGGTGG
GGAGGAGGAGGAAAGTCCGATGATCTCACGTATGAAAACATCTGGTCCAG
CCTGCCCCTCGAGCCCTCTCTCTAAATTTTCCACTGGAAGCAACTCTAGA
TCTTCCCTGATTTGAGTCCATCAATGGACTACAGTTTTACACTCAAAACG
ATGCATGCATACGTTTTTATTTTTCCCTTGCCCTGTTCACCAAGTCACTT
TGTATCTCCTCTTTTAGTCACTACGCTAACCTATGACTGTCTGGATCCGT
ACGCCCGTGTCGTTTCCTCATGCTTCAGTTCTCCGATCTGGCGGAAATTC
CGTACCCATCCTACTACGAACATTTCTTAGGGATATTGGATGTGTTCAAC
TTTGGTGAAGAGACTCTGGATAAACGGAGCAACGAAACGACCCTTCCATA
AACATATACAGTAGTAGTACTATTGCAGCATAGCCTAGAGTCGGCGACGA
GGCATCGAAGAAAAAAGATAGGCTATAGAATATAATTCAAATAATACAAT
CTCCCCCCGCTACCTCCCTCCCTCCCGTCGCATTTTTGCTTTGACAAAGA
TATCCCGTGGGCCTTGTCTGCCACGTGCCTTGTGGACGGGATCAGCTTTT
ACGTAAAGCTCGTCATCGTGACTCTTGCCCCCATCATATTGCTGGGGGCT
CTCGGAGTTACCTACGTTGGTGCCATGTGTGGCGCAGGGAACAGACTATC
ATGCTATCGAAAGCCGTCAGCAGGCAAAAGTTCGTCACGCTAGCGCCGCG
CTGTTGGTGCTCTTTTTGGTGGGTTCTCAGTTGGACGGCGGGCGGGGCAG
GAAGGATCATAGTTCAAAGGCGAAGTTGTTTAATAGTTGTGCTCTAAACA
TTTTATTTCTATCGAGCTTGCAACAGGCACCTTGGGAAAAGTGCCACTCG
AATAGTGGTTCTTATTGTACTTGAGCTGCGCCCATTTAGCATTGCTTATC
ATAAATTGTTTGACCTCGCGTTCGTCCTTGGTCTGTCGAGCTCGTTTGTG
ATCACCGGCGTCTCTCAGTGCTAGTCCTGTCTCTTCAGCCAGTTGAAATA
CGAATCGCCCGACCGTACTTTTCTTCTCTCTGCAAATCTCCTGGGTGATG
ATAACAACGGCACTACAGGTCTTCAGCTCATAAGCACCACAATATTCTCA
ACGTTTTCGTGCGACTACGTAGAGGATCTCGAGGTCCATATGCTGCGAGC
AGACTACAGCATTTCTTGCTACGACAAACGCCATGTGTACTGCAGGTGCA
GCGCGTGATTTTCTCGCCTCCAGGTGCAAACTGTCTTAGGTTTTCCCCCT
CTCCCCAACCCACTTTGCGTGTCCTCATCCCTTTCCAATGGTTGAAATAA
CATTTCTTTGACTTTCCATGGGGTGAAAAATGGATCAGACACGAAACCTG
TTGTGCGAAGTCGGTGGGTTCGATTTCAACGGAGCTTATCCTTTTCTTCT
AGAATGCGGAGACGGGAGGCGGAAAGCGCTAGAAAGTGAAAAACCAAAAT
CCGACATTTTTGCTGACGAACTCCAAGTTTGCCCAATTTGCATCGTGACG
AAACTATTTAAGCGTGAACCGAGGAGAGATAGGTAGATTCTCAAGGACCA
CAAGCAGGATGGGAAGCTTTAGTGTAGTTCATTGATATGTTCCATCGCCT
GAAGGTGAGAAACAAGCAAAAGTGAGAGCAATAAAATAAAGAGGGTGGAA
AAATCTCGACCGTCTGGCTGAGTGCTGTTTGAGCATGCGATGGCGTTGGC
CACCCGTCGTCCGTTCGACATGTATGGGACTTGTTAGGCTTTGCCCTCTT
CTTGAGGCCTCATCGCCGAGTCTATCAGGACGTAATGAGGCCTATCGTAC
CGCAATCTCTATTCTCGTTACCCGTTGCACTACAAATGCATCGTCCACCA
TGCGTGTTTAGATCTACGCCGGGGCGATGATCCTCGTGTATCCGGTCGGC
ATCCCGGCCACGTTCATCTATCTTCTCCTCAAGCACCGCGAGAAGATCAA
CCCCTGCCGCTACCGGAGGCTAGGCCAACTCCCTCAACGATCCGGGCGGA
GGCGTTCCTGAAACGTCGGGCCTGCATCGCCCCTAGTGAGCCGTTTCTTG
CCGATATTTCAACATCGGATGCGCCGGTCACCATTCCTAGCCTTTGTCGT
GATCAGCATATCGGGGTGCGCAGGGGAAGATATGAGGGAGTCTAGGGACA
TCGGCGACGGCGACGGCGGTGATGACCGCACCGGTCATAGAAACGGCGTC
ACTGGCGAGAGATATATATTTGGTGATTTGTCCTCGTGCCCCACCGACGC
GAATCGTGAAGAGGTAAGTCGGGGACATATGGCCTCTGTGTGTTCGGCTG
GATGCTGGATTCGGGAGAGTCTGGAGTGAGAGAACCACGGACGGATGCCA
GGGCGATGTGCGTATGAGAGGGTGGGGGGATAAGAGGGAAATTTTCACTG
TATGGGAAAATATGCGGTGTCGTGCTTGAAAAGGGCGCACGCCTGGGTGT
GGGATGATATATTTTCGAACGGCTGCGATCGGCAAACAACTTCGATAAAT
TGCTTCCGTTTCTTGAAGAACAAGGTAGAAGGGATCCTACGTGGCCGTGT
AAGGCTTGTCGAAAAATATGTTCGCTTCTGTCGTATGGTGGTGAGCGTGA
ATACACACGAATCTGCTGTGATTAGAATAACCGACGACGATTGCATCCTT
GAAGGCGTAACCCCGCCCCTCCTTCCTCTCCCTTGCGGCGCTGTTTACTA
TTTCTGGAATGGTGGGGGTTCATGGTGTCTACAGGTGCTGAGAAAACGAG
CCCAAGATTTGGACTTACAGCCAACCAAGTTCTTGTGGGAACCCTACGGT
GCGCAGCGCACTAAACATCCCCTGAAATGCATAGTGTCCCGCGTCAGTGA
CGCCGTGGTTCTTGCGGCGCAATAAATATATTTTCTCAGCTGTTTTACGT
TTTCGCTCAACGTCGTCACCGCCCTTCTTCGTTACCAACACCCTCGTTGG
CTCCTGCAGAACCTCAGAACTTCTACTACGAAGCTGTGGAATGCGGTCGA
CGCTGCTAATGACGGGGAGCCCTAGGTAAGACACTTTATCGCCATGTTTG
CTCTTTTTTACGGGTCGACAGTTTTTTAAATCACGGCAACCAAACGTGGA
ACATGCGTAGAGAACGTTCACGCGTGCTGCATTTTGTCCTGCCTCGTCCA
CCACCATGCCGAGCCTTCTACCTCCTGCACTTCCCCTTGTTCCCCTCGTT
GGCATTCGATGTCTAAATCTCCATTGCCTCAGTGTTTGTGCTCCCCAACA
CGGCCGGTCAAATGGCAGGGGCGTGTATCTTCGCCTTCGTGACCTTACTG
GTGTTCGAGCTGATAAGGCCACATCTCTCCCAGACCGACGGCTGGATGTA
TCGCACCAGAAGTGAGCGTGGGCATTTTCAGAAGCCCAAGCCCATCTTTT
CGAGTCTCTTTCCTTTCTCTCTATTTCCCATGTGGTACGCGTACCGATGT
CATGTGTGCAGGCTGGCGCCCCGACTTCGTGTGGATATCGCGACACAGGC
ACTGGCGCGTGTCTTTCAAATATACTTCTACGTCTCACGTGTTCCCTTGC
TGCATCCTTCGATGTGTGTATTTATGATTTCCTCGCCACAGCAATATAAT
CGTTTTAGCTGAAATCAGAAGATTGACGCCTGCTGTCCCTGTTTTGACTT
CTATCTCCTCATGGAGCAGGGTTGCATCGTCATTTTCTTCAGCAACTTCT
TAGGGCTCATGGCTAAGGTGCGCAAGCGCCCATCCCACTGCTACCCTTCA
CTGGGTTTGACCGTATCAGGCTCTGCAAAGTTACCATGCCTGTTAAGTAG
GTTTTACTCCTTCGGACTTGTTCCTCGGACGATCGTGGTTTGGTTTGATG
GTATGGGGTGTTTTGATATCTACTCATGTTTCGGGCGGCTCATTGTCAAC
TCTCCGCTTTGAGCCCTATAGAGAACTTTATGAAGGGGGTTGACGTACAT
TTCTTGCCTTACCCCCTCGGATGAGTAGTAGTCGAGCGCGAAGACGAGGC
CTCTACCTGGCGCGCGGGCGTCCTCCAAGCTCAACCGCGTTATTACTTTA
CCCTTACGGGGTGTGCTCTGAAAGCAGTAAGTTATTACTGTGTTGAAGTG
AATACTACTCTTCTGATGGTGTAAACGTAGTCTTTGTTCACAACAGCATG
TATCATCACCACGACAAGCGTAGCAACTAGCGGCAGGAGTGGTAAACACC
CCCTTTAATATACGACAACTTTCCTGTTTTTTGGAATATTTGTTCTTCAT
CCTTACCCCTTGATCGACCCCCGACTCCGCCCTGTGGACCCCATCTTTTT
ATGGGCACCTCGACAAGGCGGACGTGTCGGAGAGCACGCAATGAGTCAAG
AGCTTTTGGTGTTTTACTCATCTGCGTCCACGCCATTATGATCATGGCCG
TAATTTTAGAGCCGTTTTGGCCATTAAGGTACGACGGATCCCGGAACATG
CGACACGATTCATTTGATTAAGCATTAACTCGAGCACCTCACTCCAGGTG
CATGAAGTTCTCTTGCTAGCGAAGCGATAAAGCCCCCCCACAACCACTTT
AAAAGCAAAAAAACTTTTTCAACATCCCTGTTCTTGTCGGTTTTGCTGTT
CACCCCTAATTGATTCACAGATTCAACTTCAAGAGTCGCCCTCCATCGAC
CACGATGATAATCTTGGTCCCGGTATGGCAGTGAACACAAACCCCGAGGA
AATCGGCATCGAAGCGAAACGTTCGACAGCAGAAGTGGTACTACGCATCT
CAGTCCCACGGCAACCCTGGACCCCGCCCGCCACAGCGCCTCGAGAGACG
TTGGATTCCGAACTGAAGACCGGGCCCGCTTTTCGGCGTCGGTCGATGAC
GGTCACCCCAGGAGCGGTTGGCGGACAAGAAAAACGACTCAGAGTGAGGG
ACGAGTCGGGCCGTTTCAGAGTGGGAGCTAGTTGTGTTTTCCAGATACTC
CTGTGCGGTGTCTCCAGCGCGTTCGCCTCAATTTGTGGCACTAAGATAAG
GTTCTCTCAAGATTCGGCCTTCTAGGCCGTACTTGGTTGTTGCTACAAGA
ACCACGGACAATATAGTAAGCGCTTCATCGTGTGTATCCCTGCCTGCCCA
TCCCGCTCACCCACAGAGTCGTTCGCCAGTTCAACCACGAAGAGCCGGGC
GATGTAGCATGCACCTCTCCGGTGCAGCGAACAAGACCATTTATCAGGTC
AGCGTCAACACGAAAGGCGATGGAGGTACATCGCCCCCATGATGCTCTCA
AGGCTCAACTCACCAGTGCCCCAGACAGCTTTCCCCTCGTGGACCAGGGC
TCGGCACCTCGGACGTACCTGGGCGTATGATTATTTCCAACGCTTCAGCG
AAAGATCTCAGTCAATCTCAGCGCTTTGCCACCGGGCCAAACCGTCGGGG
CACCTTATTTTCAATCGATGAGATCACTCGCAGCGATGGCAATGGAGTAG
ACGGGGTGTTTGTAGAGGTGAATTTTCTCAAGTCGATTCCGTGTCTTCGC
TCTAGGGTAGCAGCGACCCGGCTTGCAGCAGTGCTCAGTCCCAGCAACAT
TACTGGTAACTTCGGTTTGGGCCGCGAACGCAGGGGCTTAACGAAAACGC
CCGGTATCGAGTTAGAGCTGCTACATCAGCCGTCGACTTGGTGAAAGCCC
CATCCATTCCAACCGCCGCAGCAAACGACACAAGCGACAAAAGTGACAGA
ATCGAGGCGATTCCGCGATCCGATTGGACGTTGGATGCTGGAGCAGACCC
TTCTCAAGGTACCGGATTGGAATTTCTCATGTCTTGTCATTGTTTGGCTA
CATAAAACACTTGACATGTAATGCGACGTTGCCCGCAACCTCAGTTGTTG
TCCGCGGCCAACCTTAGTTGTTAGCTGCGTTCAACATACATCCCTGGAGA
CCGACCTGAGACTCCCGGCGGTATGAAGGGCTAAGGACGTTTCGTTAGCT
TCGACGGATCTAGCCGCGGTCATCACGACCGGAAGCTTGAAGCAAGGAAG
GAATCAAGCGCACGACAGTCAACGCGTTTGGCTTTCACCGACTTTTCTGA
GCAACAATACTACGGCGAAATATGGCTGAGGTATTGCGTACCTCGAGAGG
TAGAGTAAAATAAAAACATTTCTAGGCCGCAGGATTGCGTCTTTGTCTAC
TGGAGAGGTGCGTGATTTGCACCGATTGGTGGCGTAGGCGGAATCGATGC
ACCCAGACCAGTCGGCGCTCACGATGAACGTGGTTATCTCGGGGTCGACG
ATATATTGCGACGCGCCACACACTGACTGGTAATGTATAATTTCCACTAT
ATATATTATCTTGGTGCGCGTCACCACCCGGTGCAACGTTTTCCAGCATC
ATTTTCATATCTACTCTCAACATCTCCGGGGAGCCACCACGTATAATCGT
TCTCTAAGAATGGTTATCTTAAAAGTCTGTTTGGAGGATGCACTTCGAAG
CGAGCGCGTAGCAGCGCGTGGTCGTTCGTTCGGGGTTTCGAAGGCGAAGT
GCAGGGTAAGCTTTTGATCCATCGTGTTCGGCGAAGATACCACAAGCGAT
ATAGCCTCGTAGAGGTGTGTTTGTCAGAATATAAGACTTCTGATCGAGGG
ATATTATGGGTATTTGAGGCAAAGATTAGAGCTCTTCTCAAAGTAAAGAG
GCTACAAGCCCCAATCGGTGAGAAACCAAGCGATGGAGAATATGGCTGAA
AAACTTTTCTTTGTAGTTCCCTGCTGAAATGTAGACGGGAATCATTTGGC
TGGGTTTTGTCTGCTTTCGTTGAAGTCAGACATTCTCGCTGTAACTTGTT
TAAAATATTTGTGTTAGTTCTTGTTTGTCTTTTCCACAACCGAAGGACGC
CTCGTGATATGATCAGCGTGAGGATCTGGCGGGCTCCACCAGAATGACGG
TGTCTCTGCCGTCGTAGTGGTGCAACGGTGGCGTCTTCGCCGGTGTTGTG
AGCGATGGGACAGTGTAACGTGTTGGGAGAACCGGATGGTTGTAAACACC
TAGCGGGTGGACCCAATGTATGCGGTTGAACTAATCAATCGGGTCCCCGT
CTGATCTTTTTCATCATCCAGGCGATTGAAACGTCGTTGTACTGGGTGGC
CGTGACGGGAGCAAAATGCGGCATTTGACAGATCTATATTTGTTTGAAAA
TTTTGTGAAATATGTTGCGCGCACGCAGCGATGGGTCTGCCATTTTCTTT
TGGTGGGAAATGCGAAAAATGAGTTGTTGCACCATTTTTGGTTTTGAATC
ACAGGCGATATGCTTTTTCTTTTCAAGTGTTTAGATCCTCGGTTGCTGTA
ACAGGAATGTCCGCTACGTCGTCTATGGTCGTGCACTGCTACTGCTGCGT
CGCCGCCGTGTGCGTACTGGATTATCTCCTCAACTTTAGAGCCTATGTGG
CTTGCATTACTTCGTCGTTTGCACTTATTTGAGTATGAATCGGGTGTGCG
GTGGTCTCGCACGTTCCATTCCCTGGGTTTGCAGCATGACCGAGGGAAGA
AAACTCACTACCTCCGTAGTCACAAGGCCTTGCGGCGTGACGCCGTGTAC
CAACGTAGAGCTATATACTGCCATACGTTGTGAATATTTCGCGGGTGCTC
GCGTATGCACTGTTGCGGCGTGTCGTTTGTTCACATTGATTGATAGTAAC
CAAATGCGATGTGCGGTCCGGCTTAAGTAAGTGATGTCAAGTTAGATCGT
AACGTAGTGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig108:106284..115045+

>mRNA_F-serratus_M_contig108.751.1 ID=mRNA_F-serratus_M_contig108.751.1|Name=mRNA_F-serratus_M_contig108.751.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig108:106284..115045+ (Fucus serratus male)
CTTCAACGCAAACAGAAGACCAACAGGACGAAAGAGCACGTCCGAGACAT
ATGGCGAAAACAATGTCCCTCGGCGCTCGCGTGCGTCGTGCGATCCGTTC
AACAAATCAAGATTCTGATAGCTTCAACGCAAACAGAAGACCAACAGGAC
GAAAGAGCACGTCCGAGACATATGGCGAAAACAATGTCCCTCGGCGCTCG
CGTGCGTCGTGCGATCCGTTCAACAAATCAAGATTCTGATAGTCGTGTGG
CAGATCCTGACGCAGTCGTGTGGCAGATCCTGACGCAGTTCTCCGATCTG
GCGGAAATTCCGTACCCATCCTACTACGAACATTTCTTAGGGATATTGGA
TGTGTTCAACTTTGTTCTCCGATCTGGCGGAAATTCCGTACCCATCCTAC
TACGAACATTTCTTAGGGATATTGGATGTGTTCAACTTTGATATCCCGTG
GGCCTTGTCTGCCACGTGCCTTGTGGACGGGATCAGCTTTTACGTAAAGC
TCGTCATCGTGACTCTTGCCCCCATCATATTGCTGGGGGCTCTCGGAGTT
ACCTACGTTGGTGCCATGTGTGGCGCAGGGAACAGACTATCATGCTATCG
AAAGCCGTCAGCAGGCAAAAGTTCGTCACGCTAGATATCCCGTGGGCCTT
GTCTGCCACGTGCCTTGTGGACGGGATCAGCTTTTACGTAAAGCTCGTCA
TCGTGACTCTTGCCCCCATCATATTGCTGGGGGCTCTCGGAGTTACCTAC
GTTGGTGCCATGTGTGGCGCAGGGAACAGACTATCATGCTATCGAAAGCC
GTCAGCAGGCAAAAGTTCGTCACGCTAG
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