mRNA_F-serratus_M_contig1079.748.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1079.748.1
Unique NamemRNA_F-serratus_M_contig1079.748.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1079.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1079contigF-serratus_M_contig1079:307136..307686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.7911966-CDS-F-serratus_M_contig1079:307135..3072151622928926.7911966-CDS-F-serratus_M_contig1079:307135..307215Fucus serratus maleCDSF-serratus_M_contig1079 307136..307215 +
1690962632.8314526-CDS-F-serratus_M_contig1079:307135..3072151690962632.8314526-CDS-F-serratus_M_contig1079:307135..307215Fucus serratus maleCDSF-serratus_M_contig1079 307136..307215 +
1622928926.808344-CDS-F-serratus_M_contig1079:307541..3076861622928926.808344-CDS-F-serratus_M_contig1079:307541..307686Fucus serratus maleCDSF-serratus_M_contig1079 307542..307686 +
1690962632.8430421-CDS-F-serratus_M_contig1079:307541..3076861690962632.8430421-CDS-F-serratus_M_contig1079:307541..307686Fucus serratus maleCDSF-serratus_M_contig1079 307542..307686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1079.748.1prot_F-serratus_M_contig1079.748.1Fucus serratus malepolypeptideF-serratus_M_contig1079 307136..307686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1079.748.1

>prot_F-serratus_M_contig1079.748.1 ID=prot_F-serratus_M_contig1079.748.1|Name=mRNA_F-serratus_M_contig1079.748.1|organism=Fucus serratus male|type=polypeptide|length=75bp
RCNEEHGGGRKRAAAPRHGGGPRNRRWCCLHFLVYDIDSKHKKLHGRRKA
LVPVLVSRIMLLPVAREICTRARHR
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mRNA from alignment at F-serratus_M_contig1079:307136..307686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1079.748.1 ID=mRNA_F-serratus_M_contig1079.748.1|Name=mRNA_F-serratus_M_contig1079.748.1|organism=Fucus serratus male|type=mRNA|length=551bp|location=Sequence derived from alignment at F-serratus_M_contig1079:307136..307686+ (Fucus serratus male)
CGATGCAATGAAGAGCATGGAGGCGGGCGCAAGAGGGCAGCAGCTCCCCG
ACACGGCGGCGGTCCGAGAAATCGTCGATGGTAGGTTGGCGACCGATTCT
TCTCCTGCCTTTCTGTATGTTATTCTCTGGGAGATGTCTCGTCAGGACGA
TCATGAAACCAATGTTTCGTGCATTTGCGCCGAAAATTTGAGCAGAGAAA
GAATGATATTTTGTTGCGCCGCGATGCCGAACGCTCAACGTCTACGAGTG
GGTGGGGGATTTTTCTTTAAAAAACAAAACAAAAACAAACAAAAACAAGC
AAGAACAAATTAAAAGCAGAGGGCCAAAAGATCGTTTTTTTTTGGTTTTT
TTTAATAGCCCCGTCTCCGCCCCCGCTCCGACCGAAAACAAACAAAACGC
CTTGAGGTGCTGCTTGCATTTTCTAGTGTATGATATCGATTCCAAACACA
AGAAACTCCACGGGAGAAGGAAGGCGTTAGTGCCGGTGCTTGTTTCACGG
ATCATGCTATTGCCGGTTGCTCGAGAGATCTGCACGCGGGCTCGGCACCG
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig1079:307136..307686+

>mRNA_F-serratus_M_contig1079.748.1 ID=mRNA_F-serratus_M_contig1079.748.1|Name=mRNA_F-serratus_M_contig1079.748.1|organism=Fucus serratus male|type=CDS|length=450bp|location=Sequence derived from alignment at F-serratus_M_contig1079:307136..307686+ (Fucus serratus male)
CGATGCAATGAAGAGCATGGAGGCGGGCGCAAGAGGGCAGCAGCTCCCCG
ACACGGCGGCGGTCCGAGAAATCGTCGATGCGATGCAATGAAGAGCATGG
AGGCGGGCGCAAGAGGGCAGCAGCTCCCCGACACGGCGGCGGTCCGAGAA
ATCGTCGATGGTGCTGCTTGCATTTTCTAGTGTATGATATCGATTCCAAA
CACAAGAAACTCCACGGGAGAAGGAAGGCGTTAGTGCCGGTGCTTGTTTC
ACGGATCATGCTATTGCCGGTTGCTCGAGAGATCTGCACGCGGGCTCGGC
ACCGGGTGCTGCTTGCATTTTCTAGTGTATGATATCGATTCCAAACACAA
GAAACTCCACGGGAGAAGGAAGGCGTTAGTGCCGGTGCTTGTTTCACGGA
TCATGCTATTGCCGGTTGCTCGAGAGATCTGCACGCGGGCTCGGCACCGG
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