mRNA_F-serratus_M_contig1079.744.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1079.744.1
Unique NamemRNA_F-serratus_M_contig1079.744.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1079.744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1079contigF-serratus_M_contig1079:59124..63050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1079.744.1prot_F-serratus_M_contig1079.744.1Fucus serratus malepolypeptideF-serratus_M_contig1079 59124..63048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.5205343-CDS-F-serratus_M_contig1079:59123..592031622928926.5205343-CDS-F-serratus_M_contig1079:59123..59203Fucus serratus maleCDSF-serratus_M_contig1079 59124..59203 -
1690962632.6973724-CDS-F-serratus_M_contig1079:59123..592031690962632.6973724-CDS-F-serratus_M_contig1079:59123..59203Fucus serratus maleCDSF-serratus_M_contig1079 59124..59203 -
1622928926.5376031-CDS-F-serratus_M_contig1079:62969..630481622928926.5376031-CDS-F-serratus_M_contig1079:62969..63048Fucus serratus maleCDSF-serratus_M_contig1079 62970..63048 -
1690962632.711548-CDS-F-serratus_M_contig1079:62969..630481690962632.711548-CDS-F-serratus_M_contig1079:62969..63048Fucus serratus maleCDSF-serratus_M_contig1079 62970..63048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928926.5566325-UTR-F-serratus_M_contig1079:63048..630501622928926.5566325-UTR-F-serratus_M_contig1079:63048..63050Fucus serratus maleUTRF-serratus_M_contig1079 63049..63050 -
1690962632.7229125-UTR-F-serratus_M_contig1079:63048..630501690962632.7229125-UTR-F-serratus_M_contig1079:63048..63050Fucus serratus maleUTRF-serratus_M_contig1079 63049..63050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1079.744.1

>prot_F-serratus_M_contig1079.744.1 ID=prot_F-serratus_M_contig1079.744.1|Name=mRNA_F-serratus_M_contig1079.744.1|organism=Fucus serratus male|type=polypeptide|length=53bp
MSPTAVPVGLREPTVAGIGTGEGEESVLGEIMEARAAGNSNRVIPKEERR
LLF
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mRNA from alignment at F-serratus_M_contig1079:59124..63050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1079.744.1 ID=mRNA_F-serratus_M_contig1079.744.1|Name=mRNA_F-serratus_M_contig1079.744.1|organism=Fucus serratus male|type=mRNA|length=3927bp|location=Sequence derived from alignment at F-serratus_M_contig1079:59124..63050- (Fucus serratus male)
AAATGAGTCCAACTGCGGTACCGGTCGGTCTAAGAGAGCCTACTGTGGCA
GGAATCGGGACTGGCGAGGGTGAGGAATCAGGTGACCTTCAACTACTGGC
TTATTTTGTGTGCGCGTTTTGTGTGGATTTATGGGTGGTCGAGAGTTGTT
GCCGATGTGAAAAGTAAAGTCTACTAAGTAGCAAATGATATTTGCCATGT
GTGTGTGTGTGTGTGTGTGTGTGTTTATAAAATTGCACATAACCACGCAA
TCCGGCCCTGTCATCCTAGCCATTCTATGCCACTCGCATTGATCCTCCCG
AGGGGGTATCAATGATACTTATTACGAAAACCTCTTGTGTGTGTGTGTGT
GTGTGTATTTATTAAACTGCACATAACCACGCAGTCCGGCCCTGTCATCC
TAGTCATTCTATGCCACTCGCGTTGATCCTCCCGAGGGGGGATCAATGAT
ACTTTATACGAAACCTTTGATCAGACACGACAAAGGGGACACGCTCTCTC
TACTTGTACAATTCTTACTTAAGCTCAGAGTTCCTTGTGCTCCCCCCCCT
GCTTCCTTATTAATCTCTACAATATGTGAGTTGGCAGCTACTGGACCGAC
CCTTCCTTTTCTACATCTCTTCCTCGTTCCACCAAAGTCTCCCTCGTTCC
CCCCTTGGCGTCTACATCTTATTAGCGGTTTCTTGCGCTTCTTAGCCTCT
CTTCCGCCATCCCCGACCCTACCCTCGTTCCCGTTCCCTTCGTCCCCGTT
CCCTCCTTCGCTACTGACCGTAGGTCCATCCCCGTTCCCATCCGGTGTTC
GTCGATGGGTCTCTACCTCCGTCCCCATCCCCGCCCTGTCCCCGCTGCCG
TGTGTGTGTGTGTGTGTGTGTGTGTTTATTAAATTGCACATAACCGCCCA
ATCCAGGCCTGCCATCCTAGTCATTCTATGCCACTCACATTGATCCTCCG
AGGGGAGGATCAATGATATTTAGTATTACAAAAACCTTTGATCAGACGCA
ACAAAGCAGCCATATTCTCTCTACTTATTACACAGTTGTTACTCTTAAGC
TCTGGCCCCTATTTTCTTGTTATTCGCTAGATTATTTGGGTTGACACCTA
CTGGACCAACCCTTTCCTTTACATTATTTTCCTGTGTCAGTGCGTGTGTC
TGTGTTTGTATTGATATAGTTGCACATAATCGCGCAATCCAACGCTGACA
TCCGATTAAAAATCATTCTGTGCTACTCGCATTGATCCTCTCATGGGTAC
TTCAGTACATGTAGGTTCTAATGATTGTATTAGTGTTCAATACAATAGTA
TATCTAAAACCATTTGATGCTGGTAAGGGAACGTGACTGACTTCATTTCT
TTATTTAGTGTCCTCACAACAGGTGTAAGGGGGGGAAAATATGTTTCTGA
CGTTTCTATATAATATCATACCAGTAAGTAGAATCTGGTACCATATGTAT
TTGTGACAAATCAGTCGTTCTTTTGTGTAAAATGATCAGGCATGATCTTG
CCGCCGCAATCCGAGCGATGGCTGTCCGGCATCTCTGGGGCGATTCCCAG
CACCCAGCACATACGTTCGTTCGTACGGACTTCGGAGATAATGTTCTTTC
TTCTGGGGCTGGCCACCTTGGTGAGAGGGCGCGTACTTGTTAGTTTTTTA
TAATATCTCCTTGTATAGTCTATAGTAGATTTTCTCGTTTTTGCTAGGAG
TATATACTCCATCCAATATATAGCTGTACTTTCTATTTTCTTCGAGAGAC
CGTGAAAGCACTACCCGACCTCTCTATTTCCCAGATACGACGTGTTTCGT
ATTATTTTGCGCGTCAAAATAGAGGAGCAAGGTTGGGGAGCAGAGATGGG
GCCACGCTGGAAATAGATAGAAAAAAAGCGTCACTTGACACAGGCAGGGA
GCAAGAGAAATACTACTATTATTATAGTGTTAATAGTTCCGTATTCATTT
TCGGCAAGCACCCTCTTCCTGGAAGAATCGCCTTCATAATTAAATGCCTA
CGAATACTTGGATTTGTTTTTGTAACAACTGTAGGACAGTACTGTTCCAC
TTGTCGCAGAGACGCTCTTGCCACAAGTGGGGGCAAAGCAAAGATCAATC
GACAGCAAATTAATTAGTTGATATAATGCCCGCTGCACAAGTGCTCGCTG
TCCGAGTCAACGTCAGTATGTTGCCAGGAATCACACGCGCGCAATCAAAG
ATAGTCGCTTTTTAACTATAGCGTACATTGATCGCTTTTTTCGCCGTCCT
CTCCACGTGATGAAAGGTAATCGAATGCTGCGTGTAGCTTCAACGTCGCC
GCGGGATTCCGGTCATATCTTCAATCTTGAATGTACTTTTTGGTTTTGCC
GTCTCTTCGTGTATGAAACAAAAATCGAAGGAAATCGTTAGGCCCATATA
GCTCAAAGGGGTAACTGATGATGTGCGTAGTTTGACACCGGATGCGGGGA
ACAGTTGCATCATCCCACACGAACATTCCTCAAGAGGTTTTCACAGTATC
GAGGCAGTTCGAGCCGAATCTCCCTTGGAAATAAGAGTTTTTTTTTCATC
CCCTCTCCCCTGCCACTATCCCCCCACGAGATAAAAGTGTAAGTGTAGAC
AAGAAACTAGCGAAAAGTATGGAATAATACTACAAAAACAATGAACATTT
CCAAATGTAGGGAGATGAAGGGCCATGCCTACTCAATGATCATATAGCTG
TCGCGTACGAAATAGATCTAACCAGCATTGGCTCTGCGTCACTTTTCTAC
TCTATTGTGGTTGTATCATGGTTGTTCCCTGCCCCAACCCTCCCCTCCCC
CACGTTCATCCCTTGACTTCAGCTGATCGTTTTCACGCCTCCGCGATAAT
CATATCCCTCTCTTCTTTCCCCGTGATGCGCGCATATCGGTGAAAAATAC
GCACACAGATTTCGCTTATTATTTTTACTTTCGACGTGATCACCATGAAA
ACCTTTTGGCCGCTCACTGTGGCGGTTTTGTTTTCGGCGGGGGGGTATTG
TGCCCTCCTCATCCAGCGACCGAGGTACCTCAATGAGGCCGATCAAGGTG
GGGAGGGGGTCGTAAAGCCTGCCCCATTACGTGCGAAAACCTACATGATC
GCTACCGAGGGTCAAAATATATTTAGAAGTCCCGCCGTCTTATTTGAAGG
GTGGTGGAGTTGTTTTTGTTTAGTTTTTTTTTCCCGTCGGTCGAGAAGGG
ATTGTTTTGGCCGCAAACGAACGAACGAGTGAAACTAGACATCTCTAATG
GTACTTACTGTATACTGCTTTCGTAAGAAACTAGGCCAATCGGTAAAAAA
AGGACAATACATCCGAAATTGCTGTCGGAATTTCTACTTGTACTGTCTTT
GGGCCTTCGCTTCCAAGGTAAAGTTTCCGATTGTTGAGATTTACTTGGGG
GCTAGTAGACTAGAGTCAGAGGGTATGCTAAACATAACACAACTTTGTTA
CTGCTAAGTATCTTACTTCCTCCCCGGGGTTTCCACTTTCGAATGAAAAC
ATCATACCTGGTATGCGTTATTTGATTATAATATTTTAGCGTGGGACACA
CCACGTGGAGGGAAGGTCTGACAGAAGGGATAGCATTACTGTTTCTGTAT
CTGGAGCAACACTTAACTCCTGTTGAAGCGTCAAAGTTTGGGAGAGTTAT
GTGGGGTGGCAAAAGCAAAACCGCCATCTTACTTGTTCGTAGATTCAAAA
CAACGCCGTGTTGAGCCCTTCCAACAACAACAAGTCGTTGTATTAACTAA
TACAAAGGGCAACACTTGTGGTACAAACGTTACATGACTCAGTACCCTCT
TTTTATTTTTCTCCCCCCCACCGCGCGATAACAAAAACAATCGGCAGTGC
TCGGGGAAATCATGGAGGCGAGAGCGGCGGGTAATTCTAATAGAGTCATC
CCCAAGGAAGAGCGCCGATTGCTGTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1079:59124..63050-

>mRNA_F-serratus_M_contig1079.744.1 ID=mRNA_F-serratus_M_contig1079.744.1|Name=mRNA_F-serratus_M_contig1079.744.1|organism=Fucus serratus male|type=CDS|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig1079:59124..63050- (Fucus serratus male)
ATGAGTCCAACTGCGGTACCGGTCGGTCTAAGAGAGCCTACTGTGGCAGG
AATCGGGACTGGCGAGGGTGAGGAATCAGATGAGTCCAACTGCGGTACCG
GTCGGTCTAAGAGAGCCTACTGTGGCAGGAATCGGGACTGGCGAGGGTGA
GGAATCAGTGCTCGGGGAAATCATGGAGGCGAGAGCGGCGGGTAATTCTA
ATAGAGTCATCCCCAAGGAAGAGCGCCGATTGCTGTTTTGCTCGGGGAAA
TCATGGAGGCGAGAGCGGCGGGTAATTCTAATAGAGTCATCCCCAAGGAA
GAGCGCCGATTGCTGTTT
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