mRNA_F-serratus_M_contig1075.732.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1075.732.1
Unique NamemRNA_F-serratus_M_contig1075.732.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: K3WHM1_GLOUD (Radical SAM core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHM1_GLOUD)

HSP 1 Score: 348 bits (894), Expect = 1.670e-109
Identity = 204/400 (51.00%), Postives = 255/400 (63.75%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L+P PV D+T L + LRE G KEVH    W H L++   H +     G      ++         L++ FA  T+ +   QRS+DGT+KLL++LQDG  +EAVI+ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL +GEILEQ+ +A+ V+PIRNVVFMGMGEPLNNYDAVL+AI+ M+   +F L+P+HITLSTVGV+ R+RQLT DAP  +LALSLHAP QE+R +IVP+++AY LDKLM A+D HL                  AV                        GR  ++EY ML GVND+ E    LG LLQGR+V VNLIPYN T      +FR P+ EA++ F  I+   + L  TIR +HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLSPLPVFDQTALPEFLREHGFKEVHALNIWRH-LAQNPTH-TFHQIPGLSKKLVEL---------LKQHFAHFTTTLTAEQRSKDGTVKLLLKLQDGHEIEAVIMKHTG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLYSGEILEQLAYANTVSPIRNVVFMGMGEPLNNYDAVLSAIKAMTS--VFGLAPKHITLSTVGVIHRIRQLTKDAPLVRLALSLHAPTQEMRTEIVPTSKAYPLDKLMLAIDEHL------------------AVKE----------------------GRLVMVEYCMLEGVNDSIETAHILGKLLQGRSVHVNLIPYNTTDV--GAQFRSPSPEAIREFHGILRDPYNLKATIRENHGTDIDGACGQLALK 342          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: M4BA69_HYAAE (Radical SAM core domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BA69_HYAAE)

HSP 1 Score: 346 bits (888), Expect = 2.090e-108
Identity = 202/400 (50.50%), Postives = 248/400 (62.00%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L P PV D+  L + L+    KEVH    W +     +A  S A+  G          P      LR  F   T+ V   QRS DGT+KLL++LQD   +EAVI+ H G   RNTLCVSSQVGCQMACTFCATGT+G+  DL +GEILEQ+ HA+RVAPIRNVVFMGMGEPLNNYDAVLAAIR M++  +F L+P+H+TLSTVGV+ R+RQL+ DAP  +LALSLHAP QE+R++IVP++ AY LDKLM A+D HL              M                             GR  ++EY MLAGVND+ E   +LG LL  R+V VNLIPYN T      +FR PT E ++AF  ++   + L  TIR +HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLRPLPVFDQKALPEFLQTHDFKEVHALTIWRYLAQRPEA--SFADIPGI---------PKTLRTQLREHFVPFTTSVTTEQRSADGTVKLLLQLQDKHEIEAVIMRHKG---RNTLCVSSQVGCQMACTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMTN--VFGLAPKHLTLSTVGVIHRIRQLSHDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLA-------------MKE---------------------------GRLVMVEYCMLAGVNDSIETAHKLGQLLSNRSVHVNLIPYNTTDV--GAQFRSPTPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALK 342          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A662X5C1_9STRA (Radical SAM core domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5C1_9STRA)

HSP 1 Score: 346 bits (888), Expect = 2.160e-108
Identity = 204/400 (51.00%), Postives = 250/400 (62.50%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L+P PV D++ L   L E G KE+H  + W H L++   H + A+  G          P     +L   FAV T+ V   QRS DGT+KLL+RLQDG  +EAVI+ H G   RNTLCVSSQVGCQM CTFCATGT+G+  DL +GEILEQ+ HA+RVAPIRNVVFMGMGEPLNNYDAVL AIR M+  ++F L+P++ITLSTVGV+ R+RQL+ DAP  +LALSLHAP QE+R +IVP++ AY L KLM A+D HL                                         K   R  ++EY MLAGVND+ E    LG LLQ R+V VNLIPYN T      +F  P  EA++AF  I+   + L  TIR +HG DIDGACGQLA+K
Sbjct:    1 MVKKRALSPLPVFDQSALPSFLLEHGFKELHALSIWRH-LAQHPTH-TFADIPGI---------PKALRTLLAEHFAVFTTTVSTEQRSADGTVKLLLRLQDGHEIEAVIMRHTG---RNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLQAIRAMT--KVFGLAPKYITLSTVGVIHRIRQLSQDAPLVRLALSLHAPTQEMRAEIVPTSTAYPLPKLMAAIDDHLAL---------------------------------------KYVNRLVMVEYCMLAGVNDSLETAHLLGQLLQNRSVHVNLIPYNTTDV--GAQFHAPEPEAIRAFHAILREPYNLKATIRENHGTDIDGACGQLALK 343          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A0P1A4V2_PLAHL (23s rrna methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A4V2_PLAHL)

HSP 1 Score: 343 bits (881), Expect = 1.950e-107
Identity = 200/400 (50.00%), Postives = 251/400 (62.75%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L+P PV D++ L + L+   IKE+H    W H L    A   D+ F            P     +L   F   T+ V + QRS DGTIKLL++LQDG  +EAVI+ H G   RNTLCVSSQVGCQM CTFCATGT+G+  DL +GEILEQ+ HA+R+APIRNVVFMGMGEPLNNYDAVLAAIR M+  ++F L+P++ITLSTVGV+ R+RQL+ DAP  +LALSLHAP QE+R++IVP++ AY LDKLM A+D HL              M                             GR  ++EY MLAGVND+ E    LG LLQ R V VNLIPYN T     ++F  P+   ++AF  ++ + + L  TIR++HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLSPLPVFDQSALPQFLKTHNIKELHALTIW-HFL----AQNPDSLFVDIP------GIPKALRALLGEHFTPFTTSVTDVQRSHDGTIKLLLKLQDGHKIEAVIMRHTG---RNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRIAPIRNVVFMGMGEPLNNYDAVLAAIRAMT--KVFGLAPKYITLSTVGVIHRIRQLSHDAPLVRLALSLHAPTQEMRSQIVPTSTAYPLDKLMTAIDEHLA-------------MKE---------------------------GRLVMVEYCMLAGVNDSIETAHILGKLLQDRKVHVNLIPYNTTDV--GDQFHSPSPSEIRAFHAVLRNMYNLKATIRKNHGTDIDGACGQLALK 342          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: W2QXR1_PHYPN (23S rRNA methyltransferase n=15 Tax=Phytophthora TaxID=4783 RepID=W2QXR1_PHYPN)

HSP 1 Score: 342 bits (878), Expect = 8.460e-107
Identity = 200/400 (50.00%), Postives = 247/400 (61.75%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L+P P  D+  L + L+  G KE+H    W +      A   DA F            P     +L   FA  T+ V   QRS DGT+KLL++LQDG  +EAVI+ H G   RNTLCVSSQVGCQM CTFCATGT+G+  DL +GEILEQ+ HA+RVAPIRNVVFMGMGEPLNNYDAVLAAIR M+  ++F L+P++ITLSTVGV+ R+RQL+ DAP  +LALSLHAP QE+R++IVP++ AY LDKLM A+D HL              M                             GR  ++EY MLAGVND+ E    LG LLQ R+V VNLIPYN T      +F  P+ E ++AF  ++   + L  TIR +HG DIDGACGQLA+K
Sbjct:   15 MVKKRTLSPLPAFDQKALPEFLQTHGFKELHALTIWRYL-----AQHPDATFADIP------GIPKTLRALLGEHFAHFTTSVTTEQRSADGTVKLLLKLQDGHEIEAVIMRHTG---RNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAMT--KVFGLAPKYITLSTVGVIHRIRQLSRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLA-------------MKE---------------------------GRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDV--GAQFHSPSPEDIRAFHAVLRDPYNLKATIRENHGTDIDGACGQLALK 356          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A3F2RVI5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVI5_9STRA)

HSP 1 Score: 351 bits (900), Expect = 1.090e-105
Identity = 200/400 (50.00%), Postives = 248/400 (62.00%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L P P  D+T L   L   G KE+H    W +      A  +D             + P     +L ++FA  T+ V   QRS DGT+KLL+RLQD   +EAVI+ H G   RNTLCVSSQVGCQM CTFCATGT+G+  DL +GEILEQ+ HA+++APIRNVVFMGMGEPLNNYDAVLAAIR M+  ++F L+P+HITLSTVGV+ R+RQLT DAP  +LALSLHAP QE+R++IVP++ AY LDKLM A+D HL   G                                        GR  ++EY MLAGVND+ E    LG LLQ R+V VNLIPYN T      +F+ P+ EA++AF  ++   + L  TIR +HG DIDGACGQLA+K
Sbjct:  375 MVKKRTLTPLPAFDQTALPAFLESHGFKELHALTIWRYLAQNPSATFADI-----------PDIPKTLRALLAKQFAHFTTTVTTEQRSADGTVKLLLRLQDNHEIEAVIMRHKG---RNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANKIAPIRNVVFMGMGEPLNNYDAVLAAIRAMT--KVFGLAPKHITLSTVGVIHRIRQLTRDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLSLKG----------------------------------------GRLVMVEYCMLAGVNDSIETAHILGKLLQNRSVHVNLIPYNTTDV--GAQFQSPSPEAIRAFHAVLREPYNLKATIRENHGTDIDGACGQLALK 716          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A1Y1IK27_KLENI (Radical SAM superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK27_KLENI)

HSP 1 Score: 335 bits (860), Expect = 4.490e-105
Identity = 201/414 (48.55%), Postives = 245/414 (59.18%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDG-TIKLLIRLQDGQMVEAVIIPH--------GGTHP---RNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVKVV 1259
            MV +R L P PV DE  L +A    G+KEVH+ A W H +S   A G   +  G          P     +L+R FA +TS V E + S DG T KLLIRLQDG  VEAVI+ +        GG  P   R TLCVSSQVGC+M CTFCATGTMGL GDL AGEI+EQ+ HAS++ PIRNVVFMGMGEPLNNY AV+AA+R ++  R F LSP H+T+STVGV+PRM  L  D P  +LALSLHAP Q LR  +VP+ARAY LD+LM ALD +    G                                   GG       L+EYVML GVND EE    LG LL+GR+V VNLIPYNP  A  ++ +R  +  +L  F+ ++   HGL  T+R+  G+DI GACGQLA +  
Sbjct:    1 MVAQRCLRPAPVFDEPALRRAFEAAGVKEVHLGAVWQHVISSAGA-GRPEDAPGL---------PGSAREVLQRHFAAVTSSVQEVKTSADGSTSKLLIRLQDGLQVEAVIMRYDASAGRYAGGPRPGGPRATLCVSSQVGCKMGCTFCATGTMGLLGDLAAGEIVEQLFHASQICPIRNVVFMGMGEPLNNYSAVVAAVRTLTAPRAFGLSPSHVTVSTVGVIPRMLTLPADLPGVRLALSLHAPTQALRATLVPAARAYPLDRLMAALDAYQAASG-----------------------------------GG------VLVEYVMLDGVNDREEDAAALGALLRGRDVFVNLIPYNP--AAAADTYRPSSALSLGYFQHVLRDGHGLHATVRQEMGQDIAGACGQLAAQAA 361          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A1V9YQK8_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YQK8_9STRA)

HSP 1 Score: 363 bits (933), Expect = 6.010e-105
Identity = 205/400 (51.25%), Postives = 255/400 (63.75%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR+L+P P+LD  LL   L+E G+K VH +  W +  S+ +A  +D + D           P    P+L+  F V ++ + E   S+DGTIKLL+ LQDG  VEAVI+ H G   RNTLCVSSQVGCQM CTFCATGTMG+  DL AGEILEQ+ HA  VAPIRNVVFMGMGEPLNNYDAVL AI+ M+   +F L+P++ITLSTVGV+ R+RQL  DAP  +LALSLHAP QELR KIVP+A+AY LDKLM A+D HL+                           D EN             R  ++EY+ML GVND+ +    LG LL+ R+V VNLIPYN T      EF+ PT+E + AF  ++   + + VT+R +HG DIDGACGQLAVK
Sbjct: 1007 MVKKRVLSPAPLLDPVLLPAFLKEHGMKPVHANKIWKYIASQVQAQNADISIDAIPQL------PKELYPLLKENFKVFSTTIAEKHVSQDGTIKLLVTLQDGHNVEAVIMKHSG---RNTLCVSSQVGCQMGCTFCATGTMGIIADLAAGEILEQLAHAFCVAPIRNVVFMGMGEPLNNYDAVLGAIKAMTS--VFGLAPKYITLSTVGVIHRIRQLKEDAPLVRLALSLHAPTQELRVKIVPTAKAYPLDKLMAAIDDHLK---------------------------DREN-------------RMVMMEYIMLRGVNDSIDTAHDLGQLLKDRSVHVNLIPYNATEVDA--EFQSPTKEEIMAFHAVLRKEYDIKVTVRENHGMDIDGACGQLAVK 1353          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A3M6VGX4_9STRA (Radical SAM core domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGX4_9STRA)

HSP 1 Score: 337 bits (864), Expect = 6.680e-105
Identity = 195/400 (48.75%), Postives = 246/400 (61.50%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRLQDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVK 1253
            MVKKR L+P P+ D+  L + L+    K++H    W +     +A  +D               P     +L   F   T+ +   QRS DGT+KLLI+LQD   +EAVI+ H G   RNTLCVSSQVGCQMACTFCATGT+G+  DL +GEILEQ+ HA+R+APIRNVVFMGMGEPLNNYDAVLAAIR M+  ++F L+P++ITLSTVGV+ R+RQL+ DAP  +LALSLHAP QE+R++IVP++ AY LDKLM A+D HL              M                             GR  ++EY MLAGVND+ E    LG LLQ R V VNLIPYN T      +F+ P+ E ++AF  I+   + L  TIR +HG DIDGACGQLA+K
Sbjct:    1 MVKKRTLSPLPIFDQKALPEFLQTHNYKKLHTLTIWRYMAQNPEALFTDI-----------PGIPKTLRTLLSEHFVPFTTSITTEQRSSDGTVKLLIKLQDEHEIEAVIMRHTG---RNTLCVSSQVGCQMACTFCATGTLGIIADLCSGEILEQLAHANRIAPIRNVVFMGMGEPLNNYDAVLAAIRAMT--KVFGLAPKYITLSTVGVIHRIRQLSHDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLDKLMAAIDDHLA-------------MKE---------------------------GRLVMVEYCMLAGVNDSIETAHLLGKLLQNRLVHVNLIPYNTTEV--GAQFQSPSPEDIRAFHAILREPYNLKATIRENHGTDIDGACGQLALK 342          
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Match: A0A383VBW3_TETOB (Radical SAM core domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VBW3_TETOB)

HSP 1 Score: 334 bits (857), Expect = 2.720e-104
Identity = 203/447 (45.41%), Postives = 262/447 (58.61%), Query Frame = 3
Query:   57 MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDANFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDG-TIKLLIRLQDGQMVEAVIIPH-------------GGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLSPRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYRLDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAMVGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTYAPGSEEFREPTEEALQAFRKIVHS-HGLLVTIRRHHGRDIDGACGQLAVKVVASESGSVATNSCRAGGGSNGGG--DIEDLVA 1346
            M   R+L+PQ V D   +L A RE GIKE HV   WS  L       SD             + P     +L ++F+  TS V+  Q+S  G T KLLI+LQDG  VEAV++ +             G  + R+TLCVSSQVGCQM CTFCATGTMGLKG+L  GEI+EQ++HA+RV PIRN+VFMGMGEPL+NY+AV AA+  M + R+F +  RHIT+STVGV+PR++Q+  D P   LALSLHAP QELR  IVPSARAY L KLMDA                   ++     S+                      ++  +EYV+LAGVND  E   +LG LLQGR++V+NLIP+NP Y P    F  P E +++ F++I+ S +GL  TIR+  G+DI GACGQL ++      G    +S  AG  S+ GG  DIE+LVA
Sbjct:    1 MAPSRVLSPQSVWDLPAVLAAFRERGIKERHVYKIWSMLLKNPDVAWSDI-----------PDLPKAAAALLEQQFSRCTSTVLRCQQSTGGDTTKLLIQLQDGMQVEAVVMHYDTSDRYTGREEAAGWGNKRSTLCVSSQVGCQMGCTFCATGTMGLKGNLCCGEIVEQLVHATRVTPIRNIVFMGMGEPLSNYEAVKAAVGMMGEPRLFGIGCRHITVSTVGVIPRIKQMAADLPGVSLALSLHAPTQELRRTIVPSARAYPLAKLMDA-------------------VAEYQAASQ----------------------QRVFVEYVVLAGVNDGPEQAHELGQLLQGRDMVINLIPWNPVYQPDGPFFAAPAEGSVEGFQRILRSSYGLHCTIRQEKGQDISGACGQLVIQHAQQAGG---CSSEAAGSSSSTGGLKDIEELVA 392          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1075.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WHM1_GLOUD1.670e-10951.00Radical SAM core domain-containing protein n=1 Tax... [more]
M4BA69_HYAAE2.090e-10850.50Radical SAM core domain-containing protein n=1 Tax... [more]
A0A662X5C1_9STRA2.160e-10851.00Radical SAM core domain-containing protein n=2 Tax... [more]
A0A0P1A4V2_PLAHL1.950e-10750.0023s rrna methyltransferase n=1 Tax=Plasmopara hals... [more]
W2QXR1_PHYPN8.460e-10750.0023S rRNA methyltransferase n=15 Tax=Phytophthora T... [more]
A0A3F2RVI5_9STRA1.090e-10550.00Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A1Y1IK27_KLENI4.490e-10548.55Radical SAM superfamily protein n=1 Tax=Klebsormid... [more]
A0A1V9YQK8_9STRA6.010e-10551.25Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
A0A3M6VGX4_9STRA6.680e-10548.75Radical SAM core domain-containing protein n=2 Tax... [more]
A0A383VBW3_TETOB2.720e-10445.41Radical SAM core domain-containing protein n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1075contigF-serratus_M_contig1075:117005..123873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score658.7
Seed ortholog evalue2.2e-186
Seed eggNOG ortholog2880.D7FLU3
KEGG koko:K06941
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Radical SAM superfamily
EggNOG OGs2QQ98@2759,COG0820@1
Ec32 ortholog descriptionRadical SAM
Ec32 orthologEc-26_001240.1
EC2.1.1.192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons8
Model size2266
Cds size1524
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1075.732.1prot_F-serratus_M_contig1075.732.1Fucus serratus malepolypeptideF-serratus_M_contig1075 117061..123187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.4143312-UTR-F-serratus_M_contig1075:117004..1170601622928924.4143312-UTR-F-serratus_M_contig1075:117004..117060Fucus serratus maleUTRF-serratus_M_contig1075 117005..117060 +
1690962631.6532748-UTR-F-serratus_M_contig1075:117004..1170601690962631.6532748-UTR-F-serratus_M_contig1075:117004..117060Fucus serratus maleUTRF-serratus_M_contig1075 117005..117060 +
1622928924.5386164-UTR-F-serratus_M_contig1075:123187..1238731622928924.5386164-UTR-F-serratus_M_contig1075:123187..123873Fucus serratus maleUTRF-serratus_M_contig1075 123188..123873 +
1690962631.7553754-UTR-F-serratus_M_contig1075:123187..1238731690962631.7553754-UTR-F-serratus_M_contig1075:123187..123873Fucus serratus maleUTRF-serratus_M_contig1075 123188..123873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.4259455-CDS-F-serratus_M_contig1075:117060..1171471622928924.4259455-CDS-F-serratus_M_contig1075:117060..117147Fucus serratus maleCDSF-serratus_M_contig1075 117061..117147 +
1690962631.6656532-CDS-F-serratus_M_contig1075:117060..1171471690962631.6656532-CDS-F-serratus_M_contig1075:117060..117147Fucus serratus maleCDSF-serratus_M_contig1075 117061..117147 +
1622928924.4373715-CDS-F-serratus_M_contig1075:119583..1197871622928924.4373715-CDS-F-serratus_M_contig1075:119583..119787Fucus serratus maleCDSF-serratus_M_contig1075 119584..119787 +
1690962631.6730278-CDS-F-serratus_M_contig1075:119583..1197871690962631.6730278-CDS-F-serratus_M_contig1075:119583..119787Fucus serratus maleCDSF-serratus_M_contig1075 119584..119787 +
1622928924.4606152-CDS-F-serratus_M_contig1075:120053..1201431622928924.4606152-CDS-F-serratus_M_contig1075:120053..120143Fucus serratus maleCDSF-serratus_M_contig1075 120054..120143 +
1690962631.6969507-CDS-F-serratus_M_contig1075:120053..1201431690962631.6969507-CDS-F-serratus_M_contig1075:120053..120143Fucus serratus maleCDSF-serratus_M_contig1075 120054..120143 +
1622928924.4727974-CDS-F-serratus_M_contig1075:120457..1205931622928924.4727974-CDS-F-serratus_M_contig1075:120457..120593Fucus serratus maleCDSF-serratus_M_contig1075 120458..120593 +
1690962631.7091677-CDS-F-serratus_M_contig1075:120457..1205931690962631.7091677-CDS-F-serratus_M_contig1075:120457..120593Fucus serratus maleCDSF-serratus_M_contig1075 120458..120593 +
1622928924.4843957-CDS-F-serratus_M_contig1075:120842..1210331622928924.4843957-CDS-F-serratus_M_contig1075:120842..121033Fucus serratus maleCDSF-serratus_M_contig1075 120843..121033 +
1690962631.717987-CDS-F-serratus_M_contig1075:120842..1210331690962631.717987-CDS-F-serratus_M_contig1075:120842..121033Fucus serratus maleCDSF-serratus_M_contig1075 120843..121033 +
1622928924.4948375-CDS-F-serratus_M_contig1075:121546..1218431622928924.4948375-CDS-F-serratus_M_contig1075:121546..121843Fucus serratus maleCDSF-serratus_M_contig1075 121547..121843 +
1690962631.7277424-CDS-F-serratus_M_contig1075:121546..1218431690962631.7277424-CDS-F-serratus_M_contig1075:121546..121843Fucus serratus maleCDSF-serratus_M_contig1075 121547..121843 +
1622928924.510946-CDS-F-serratus_M_contig1075:122174..1223171622928924.510946-CDS-F-serratus_M_contig1075:122174..122317Fucus serratus maleCDSF-serratus_M_contig1075 122175..122317 +
1690962631.7367623-CDS-F-serratus_M_contig1075:122174..1223171690962631.7367623-CDS-F-serratus_M_contig1075:122174..122317Fucus serratus maleCDSF-serratus_M_contig1075 122175..122317 +
1622928924.524758-CDS-F-serratus_M_contig1075:122811..1231871622928924.524758-CDS-F-serratus_M_contig1075:122811..123187Fucus serratus maleCDSF-serratus_M_contig1075 122812..123187 +
1690962631.7478228-CDS-F-serratus_M_contig1075:122811..1231871690962631.7478228-CDS-F-serratus_M_contig1075:122811..123187Fucus serratus maleCDSF-serratus_M_contig1075 122812..123187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1075.732.1

>prot_F-serratus_M_contig1075.732.1 ID=prot_F-serratus_M_contig1075.732.1|Name=mRNA_F-serratus_M_contig1075.732.1|organism=Fucus serratus male|type=polypeptide|length=508bp
MVKKRILNPQPVLDETLLLKALREEGIKEVHVSAAWSHALSEGKAHGSDA
NFDGFEHANFDMNAPAPTGPMLRRKFAVLTSKVVETQRSEDGTIKLLIRL
QDGQMVEAVIIPHGGTHPRNTLCVSSQVGCQMACTFCATGTMGLKGDLTA
GEILEQVLHASRVAPIRNVVFMGMGEPLNNYDAVLAAIRGMSDGRMFKLS
PRHITLSTVGVVPRMRQLTVDAPDTQLALSLHAPNQELRNKIVPSARAYR
LDKLMDALDGHLRGPGIPPTAPLPPKMSSIAVGSEGEAEGDVENVAGVAM
VGGKGAGRKALIEYVMLAGVNDTEECGRQLGDLLQGRNVVVNLIPYNPTY
APGSEEFREPTEEALQAFRKIVHSHGLLVTIRRHHGRDIDGACGQLAVKV
VASESGSVATNSCRAGGGSNGGGDIEDLVARSNRGGSRGTSGGTESKRRS
SRKHTYSSDAAVKDRKGDDVVRESTGWSRTGRVALAGMVLGLGVVVAVAV
ARARRRG*
back to top

mRNA from alignment at F-serratus_M_contig1075:117005..123873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1075.732.1 ID=mRNA_F-serratus_M_contig1075.732.1|Name=mRNA_F-serratus_M_contig1075.732.1|organism=Fucus serratus male|type=mRNA|length=6869bp|location=Sequence derived from alignment at F-serratus_M_contig1075:117005..123873+ (Fucus serratus male)
GACCAATATCAGCGGTAGTTTAGTCATTGGCAGCGTGCTGAGCATTGATT CGACTCATGGTGAAGAAACGTATCCTCAATCCCCAGCCTGTTCTCGATGA GACATTGCTGTTGAAAGCTCTGCGCGAAGAGGGTATCAAGGAGGTGAGCC ATTTGACTTGGCACATATATTACATGCCGGTATTTGATCTTTATCTACAG TCTTTATTTACAGTGATACACGGCACAAGGAAACGATGCAGCAGTACAAA AGTAGATAAAAGTAACTCAGATGATTGAAGTCGACGTCACCTTTGCAACA GCCACACCAGCGTCCCCCATGACTGCCGTTGCTGAGCCTCGCACATGAAA AACGAAATTTGCTGATGGAGGCAAAATGGAGCGATTTTGAGTCATAACGG TACATCGCTGATACCAGCTGTTGGGACCAACCTGACAGTCCGGCGTCAAC AATCTACAGTACACAGTAAAGTACTAGTAGTACATTTACAGAAAGTGTGC AAGTATTTATGTACTGCATTGTGTATGTACTGTCATCACAGATGGCAGAG TGAGCATCAACCGGTATAGGTTGTCAATACTGCTCGTGGTCAGCTCAACA GCGAGACATTTTGGCCGTCACGTCCCGCGTCAGCACGCTCATTATCCACA CTCAGGCTGAATCTGGTGTACAAGAAGCTCCAGATTCAGCCTGATTGTCG AGAATGGAAAGGCTGTCGCGGGACGGGACGGCCGAACCCGTCTCGCGAGA CCAAATTCTCAGGCGCGAACGGGGATAGGGGAATTTTCATTTTCCCTGTT CAGGTGACCACGAACAGGATTGGCAACCTTACCCGGTTGGTCGATACTTT TCTATTATAGGTGGTGACAATACATACTACGGTACCAGTTACTGCTGTAT TCTGTATCATACTCCTATTAATAGTACCACTAAATCAGTGCTGTTCACTG TATAGAAAATGTGAAAGCATGTAAACCTTCCGAGCATCCGCACCGTTCCG GGGGAAAATTGTGGAAACGTTTAGTTGGGAGCATTGGCTGATTCGTACAA AAGTTCCAAATGGAATTTCTATTAACAGTCGGGTTATGTACCCCAATGTT AGTCAACAGTATAATATGGGGGAGAGACCCACCATTATACTGCTGTACAC TTACACATATCGCCATGTGGATACACCAAAATCAGCGAGTAGTTGAGTGC ATTTGAACCAAATGCATTACTAATAAATATACTAAGCTTGGTAGAGGGCT CGTATCACGAACATCCCATGGAATGTTCACGTCGCTCTAGATCGACTCGG TTAGAGGCTCTGAGGCACAAAAAGTAAAAACTTTGACAGGAGATTGACTT CTGAGCTGCTCTTCTAGCATGATGGGTTTCCCGTTACATTTTACATTTTC GATTATAACAATTTTTTCCCCTATTAACTACAATACCTGACAATCTTTTG GCGCCCGCTACTGCTGAAATAATTTTCCCCCGAGATGGCGAAGTAGTGGC CGTACTCAACAAAAACGAGCAGTGTTATCGACACAACATCCGAGGTTTTG TCTTTGCAGCCTATGACCCCATCTAAACGTTTTGACATTTTTTTCCACTT GACTATTACTATTACTATTAGTATTAGTATTAATATTACTATTAATATTG CTATTACTATTACTATTACTATTAATATTACTGTTAATATTGCTATTACT ATTACTATTACTATTACTGGGGGGATGCCCAGAAGGTCTAGATGCGTTCA TAATTTTCTTTTTATTAACGCGGATAGGTTGGGAAAGATCCCCATACCTT CATGGAACTGTATTCACCCTTGATTCTTCGTGAAAGAGTCGTTCTCCAGT TACCATATTCAACGGCGATTGCAGTAGGAGCGCTCGGGCGCTAAGGATGC GGTCTCGGCATGGGGAGCCACTTGCGCACAATATCCGACTCAATCGACGG GGCTTCAAAACCTCCTTCGTTGGAGTCGCTGCCGGCAACACGTTTGTTTA GACATTGTTCTATGATGTTGGTAGCCCATGTTCTTATATGCTGGCACGTT CGACATGCCCACTTCATACCTATTATGGGTGTGAGAAAGAGAGGCGCATA TTAATTGGTCCATAGTGACCTGCCAAGGCAGCACTCGTTCGTCAATACCT TGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTAAACGCCATCG GTACGTAATTGCGTGACCCGATAAACTCGGGACCGACCCGATGGCGTACG GCGGTTCGAAATAAATAAATGGTCGCCGCCGCGGAACTCGGGAGGAATCC CGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGGGCAGGCTGACG CGGGACGGTACTGCCGAAACCGTCTCGCGAGACCAAATTCTCAGGCACGA ACGGGACGGGGGAATATTATTTTCCCTGTTCAGCTGACCACGAGCAGGAT TGGCAACCTTACCAGCTTGATCCATAACATACTCTGCTATATGTGATGTC CATACACACATAGATACATATATGTATTCCATGCAGTACATTCGACGCCT TCGCCATTGCACCGAATCTTGCTCGGCAGGTTCACGTTAGCGCTGCGTGG AGCCATGCTCTGTCGGAGGGAAAAGCTCACGGGTCAGACGCGAACTTCGA TGGCTTCGAGCACGCCAACTTCGACATGAACGCCCCCGCACCTACCGGTC CGATGCTCAGGCGTAAGTTTGCAGTTCTGACATCGAAAGTGGTGGAAACC CAGCGATCGGAAGACGGGACCATCAAGCTTCTGGTGCGTGGGATTTCATA AAGAGCAACATCAACGGTACTTTCTTCTGTACAGACGTTTTGAGGTACCA GCCGTAGAGATGGCCAACTGTCCGAAAATCAGTGTTGCCCACCTTGCTCT TCAATAATTGCTGCGTGAGCTCCGAAATGCTTAAGAGGCGTATCCCTGCA GGGAACGTGACGCGCAACAACCCCTGCTCCTCTCTTCTTTGTCCCGTAAT CCGCTCGTGTCGTATGTGGCGCGCCAATGTGACGCATCGCTCCGCGCAGA TTCGTCTGCAGGACGGGCAGATGGTGGAGGCCGTTATCATCCCTCACGGG GGCACGCACCCTCGGAACACCCTCTGCGTTTCTTCTCAGGTGCGAGGCAA CGCGCTCCTTTCCACCATGGGGCAACTCTTGCAATTTTGCGAAATAGCTG ATCGGCGTGCGCGATGCGTAACGGCAGCTGACCTCAAGTCTTCTGCAGCG GGATCAGTTTCGGGGTGGTTGGAGGGATTGGAGTCTTAGGTCCAGGTAAC TAGAATACTTTGATCGTACAGAATCACAATCCAGCTAGGTTACGTAGCCC GGGAGTCCTTGTGCGTAATCGCGTCCAGTGCGGGGAGCGTTGCGAAGACG CGGTCGGCGACTGGCTTGCGCTGGGTTCTTTGTCGCGTCTCGACCCTTGG CAGGTCGGGTGTCAAATGGCATGCACGTTTTGCGCCACCGGGACGATGGG CTTGAAGGGAGACCTCACCGCTGGAGAGATTCTGGAGCAAGTTCTCCATG CGTCCAGAGTCGCCCCCATTCGTAACGTGGTCTTCATGGGTGAGTTAGGC TCCAGGGGGTCGTTTGCGTGCAGGATGGTGTAGACCTAAATTCTACGCGT GCGTCTCCTTTTCCCATTTTTGGGCGATGCAGTTGAGGCAGTTGAGGAGC TGAATTGTTTGGGATGTGATCAATCGGACAGTCCAGCTTGTTTTGAGTAC CTTCGCGGGTGCATAGCCAGCATCTGCACGTCCGAGGGAGCGTTAAGACT TATGGAAATATCGTCGCCCTTGTCCCGCCCTCGCGGAGGCATGGGAGAGC CGCTAAACAATTACGACGCGGTTTTGGCGGCCATCCGAGGGATGTCGGAC GGTCGAATGTTCAAGCTCTCTCCTCGGCACATCACCCTCTCCACCGTTGG CGTCGTGCCTCGTATGAGGCAGCTCACGGTCGACGCGCCAGACACTCAGC TGGCGCTGTCGCTGCACGCACCCAATCAGGTACAGCGGGGATAGACGCCG GGCCGCCTGTGGCCGGTTTACGCATATCAACGATCCTCTTGACAACTCCA GAGGTACACGATTCATTGTAAAGTATACTTGAATGTACCTTGAACGAAGC GCCACGGATGTCATGTAACTGGGACCGGTTGTGCTGTTGAAGGCCAGCCT TCGTCTCCGACTTGGATGAGCGGTACCGATATAGACTGAGGCTGGCGGAA TTGTGTCGTGTACCAGTTATTTTCGGAGACCTTTCTATCGGCAAAGCTTT GTCTTAAGCGAGCGATTCTCTGCGCACACGATGTAATAAATAAACAGCTT AAGTGCGGTAGAGTCCCTTGCTGATGTCCATGGACGTGGAGGTCGATCCA CAGCCCACTCTTACTAAAGTACATGAGCGTGTCCTGCCAACGGTTCGGCC ACCTTACGGTCACACGTGTCACGGAGAGTCGAAGGGCGCTGTCCTCGTTT ATTCTACGTGCTCCGTTCGAAACCCGCTCTTACGCTGCGCAGGAGCTCCG CAATAAGATTGTTCCCTCGGCTCGCGCCTACCGACTTGACAAGCTCATGG ATGCCTTGGACGGTCATCTAAGAGGACCAGGGATTCCGCCGACAGCGCCC CTGCCGCCGAAGATGTCAAGCATTGCTGTCGGAAGTGAGGGTGAAGCTGA AGGGGATGTCGAGAACGTCGCAGGCGTCGCCATGGTCGGAGGAAAGGGGG CGGGACGGAAGGCGTTGATCGAGTACGTTATGTTGGCTGGTGTCAATGAC ACAGAGGAGTGTGGCCGACAGCTCGGGGATCTCTTGCAGGTACAGTAGTC AGCGATCGTATTTTATCATCCCGGGCTCGGTGTGCTATTATAGTGGGGAG GGCCTGAGCAACGACAAAACATAAGAAGCTTCATATTCTCTACACCTATC CCGTCGTATATTTCGGTCTCCAACGAAGTGGCGTCTGGTTTGATACGCGT TTCGTCAATGGCGACCCACTTGGATCTCGTCACGACCACCAAGTCCCCTA GGCACTCGACGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTGTTGGCT ACATAGTCGTTTTTTTCATCGCCTGCAGAACGCGCTAACACTATTTTTCC CTTATAACCTCTTGTCCCAGGGACGCAACGTGGTGGTGAATCTCATCCCT TATAACCCCACGTATGCGCCCGGGTCGGAGGAGTTCCGAGAACCCACGGA AGAAGCTTTGCAGGCCTTCAGGAAGATCGTTCACAGCCACGGATTACTGG TCACCATACGAAGGTGAGAGCAACCACCAGCGGCGGGCGGATGATTGGTA TTGGTAATAACATTTTTGGGCTCGAAATTACTTGAGAAATGAGACAATTA TTGAGTTTTATTTCCACGGCCTCGTTTGGGTGAACTCGTCTCGTTCTTTT TGGTCACAACCTAAGCACGCTCTTGCTCCTGTCAATAGAGCATCACCGAC ACCATGTGAAGCATTGTGTGAAATTTTACCCTACACGCTCGCATGCCCAC ATCTGGAACGCCATTTGCTAATGTCCCCCCCCCCCCCACCTGATCTAATC TAATCTATTAATAGTCCAGTCTCACTCCGTGGCTCATGCACGACCCCTGA AGTACACCCCGACAGACGTAGCAAGTAGATAACAATTCTGACGTTAACAA CAGTATACAATATACAATATGCCACTTCCACGAGGTGCAAACGATGCCCC GTGCGTTTTCTGCCGCGGCTCGGTGTCATTCGCATCGCCGGTGTCACTTT ACTACAGGCACCACGGGCGCGACATCGACGGCGCGTGCGGCCAGCTGGCT GTGAAGGTGGTCGCCAGCGAGTCAGGGTCAGTGGCCACGAACTCTTGCAG GGCCGGGGGTGGCAGCAATGGTGGGGGAGACATCGAGGATCTGGTGGCGA GGAGTAACCGCGGGGGGTCGAGGGGCACTAGCGGCGGGACGGAGAGCAAA CGTCGATCAAGTCGGAAACATACCTATTCGTCGGATGCTGCGGTCAAGGA CAGAAAAGGCGACGATGTTGTTAGGGAAAGCACGGGATGGTCGCGCACGG GGAGGGTGGCGTTGGCTGGGATGGTGTTGGGCCTGGGAGTTGTCGTGGCG GTGGCTGTGGCGCGCGCTCGACGGAGAGGGTGATCTCCCTCAGTGAGAGC AGCTGCCGGGAAACTTTCAGAAGGGACAAGAGTTCAGGATGACAGGCATT CGGTTCATGTACGACTATGAATAGTGGTGCGTAATGTGCACCCTACGAGT GTAGAGTCAAGAACGACCAACTGCTGAAGTGTTGTTACTGGGGAAGACGT AGAACACCTTTTTTCCCTTGTCCTCATATACTGTCGAGACTTCATCTCCA AACATAGCGAGCAACGAGGTCCACGGCGGTGGAGGCCCTGAGTCGGTGAA GCTGGCGCGCGAGCCAGCATCCAGCTGTCCAAGGTCCTGTGCATCCCTGA AAAACGCCCCCAGAATCTTGCCTGTTCGCCGCTCCTTGTTGGCTCTCATA GGACGAATAAACAGACTGTGGTGAGAGATCTCAGCTTTCCCATCAAAACC CTCGCGGTTCGCGCCTTTGATTCTCTCGCATAAGAGTTCCAGCACTCCCC TGGGTCGTCGACGATCAAGCTACCCTCCGCCTTCACCGCCGAGTTATGTT TTGAGTGCATGGTAGGTGTAGGTGTTGCACTGTTGTTTTGAGTACCATGA CACGGTAACATTGAACGTTTTGAATAGCCTCATCAAATAAAGTAAGAGGG GAAAAGAATGTACTACTGTACTGTACTGATTGATTGAATGATTGATTGAA TTCTCACATAAGACAATGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1075:117005..123873+

>mRNA_F-serratus_M_contig1075.732.1 ID=mRNA_F-serratus_M_contig1075.732.1|Name=mRNA_F-serratus_M_contig1075.732.1|organism=Fucus serratus male|type=CDS|length=3048bp|location=Sequence derived from alignment at F-serratus_M_contig1075:117005..123873+ (Fucus serratus male)
ATGGTGAAGAAACGTATCCTCAATCCCCAGCCTGTTCTCGATGAGACATT
GCTGTTGAAAGCTCTGCGCGAAGAGGGTATCAAGGAGATGGTGAAGAAAC
GTATCCTCAATCCCCAGCCTGTTCTCGATGAGACATTGCTGTTGAAAGCT
CTGCGCGAAGAGGGTATCAAGGAGGTTCACGTTAGCGCTGCGTGGAGCCA
TGCTCTGTCGGAGGGAAAAGCTCACGGGTCAGACGCGAACTTCGATGGCT
TCGAGCACGCCAACTTCGACATGAACGCCCCCGCACCTACCGGTCCGATG
CTCAGGCGTAAGTTTGCAGTTCTGACATCGAAAGTGGTGGAAACCCAGCG
ATCGGAAGACGGGACCATCAAGCTTCTGGTTCACGTTAGCGCTGCGTGGA
GCCATGCTCTGTCGGAGGGAAAAGCTCACGGGTCAGACGCGAACTTCGAT
GGCTTCGAGCACGCCAACTTCGACATGAACGCCCCCGCACCTACCGGTCC
GATGCTCAGGCGTAAGTTTGCAGTTCTGACATCGAAAGTGGTGGAAACCC
AGCGATCGGAAGACGGGACCATCAAGCTTCTGATTCGTCTGCAGGACGGG
CAGATGGTGGAGGCCGTTATCATCCCTCACGGGGGCACGCACCCTCGGAA
CACCCTCTGCGTTTCTTCTCAGATTCGTCTGCAGGACGGGCAGATGGTGG
AGGCCGTTATCATCCCTCACGGGGGCACGCACCCTCGGAACACCCTCTGC
GTTTCTTCTCAGGTCGGGTGTCAAATGGCATGCACGTTTTGCGCCACCGG
GACGATGGGCTTGAAGGGAGACCTCACCGCTGGAGAGATTCTGGAGCAAG
TTCTCCATGCGTCCAGAGTCGCCCCCATTCGTAACGTGGTCTTCATGGGT
CGGGTGTCAAATGGCATGCACGTTTTGCGCCACCGGGACGATGGGCTTGA
AGGGAGACCTCACCGCTGGAGAGATTCTGGAGCAAGTTCTCCATGCGTCC
AGAGTCGCCCCCATTCGTAACGTGGTCTTCATGGGCATGGGAGAGCCGCT
AAACAATTACGACGCGGTTTTGGCGGCCATCCGAGGGATGTCGGACGGTC
GAATGTTCAAGCTCTCTCCTCGGCACATCACCCTCTCCACCGTTGGCGTC
GTGCCTCGTATGAGGCAGCTCACGGTCGACGCGCCAGACACTCAGCTGGC
GCTGTCGCTGCACGCACCCAATCAGGCATGGGAGAGCCGCTAAACAATTA
CGACGCGGTTTTGGCGGCCATCCGAGGGATGTCGGACGGTCGAATGTTCA
AGCTCTCTCCTCGGCACATCACCCTCTCCACCGTTGGCGTCGTGCCTCGT
ATGAGGCAGCTCACGGTCGACGCGCCAGACACTCAGCTGGCGCTGTCGCT
GCACGCACCCAATCAGGAGCTCCGCAATAAGATTGTTCCCTCGGCTCGCG
CCTACCGACTTGACAAGCTCATGGATGCCTTGGACGGTCATCTAAGAGGA
CCAGGGATTCCGCCGACAGCGCCCCTGCCGCCGAAGATGTCAAGCATTGC
TGTCGGAAGTGAGGGTGAAGCTGAAGGGGATGTCGAGAACGTCGCAGGCG
TCGCCATGGTCGGAGGAAAGGGGGCGGGACGGAAGGCGTTGATCGAGTAC
GTTATGTTGGCTGGTGTCAATGACACAGAGGAGTGTGGCCGACAGCTCGG
GGATCTCTTGCAGGAGCTCCGCAATAAGATTGTTCCCTCGGCTCGCGCCT
ACCGACTTGACAAGCTCATGGATGCCTTGGACGGTCATCTAAGAGGACCA
GGGATTCCGCCGACAGCGCCCCTGCCGCCGAAGATGTCAAGCATTGCTGT
CGGAAGTGAGGGTGAAGCTGAAGGGGATGTCGAGAACGTCGCAGGCGTCG
CCATGGTCGGAGGAAAGGGGGCGGGACGGAAGGCGTTGATCGAGTACGTT
ATGTTGGCTGGTGTCAATGACACAGAGGAGTGTGGCCGACAGCTCGGGGA
TCTCTTGCAGGGACGCAACGTGGTGGTGAATCTCATCCCTTATAACCCCA
CGTATGCGCCCGGGTCGGAGGAGTTCCGAGAACCCACGGAAGAAGCTTTG
CAGGCCTTCAGGAAGATCGTTCACAGCCACGGATTACTGGTCACCATACG
AAGGGACGCAACGTGGTGGTGAATCTCATCCCTTATAACCCCACGTATGC
GCCCGGGTCGGAGGAGTTCCGAGAACCCACGGAAGAAGCTTTGCAGGCCT
TCAGGAAGATCGTTCACAGCCACGGATTACTGGTCACCATACGAAGGCAC
CACGGGCGCGACATCGACGGCGCGTGCGGCCAGCTGGCTGTGAAGGTGGT
CGCCAGCGAGTCAGGGTCAGTGGCCACGAACTCTTGCAGGGCCGGGGGTG
GCAGCAATGGTGGGGGAGACATCGAGGATCTGGTGGCGAGGAGTAACCGC
GGGGGGTCGAGGGGCACTAGCGGCGGGACGGAGAGCAAACGTCGATCAAG
TCGGAAACATACCTATTCGTCGGATGCTGCGGTCAAGGACAGAAAAGGCG
ACGATGTTGTTAGGGAAAGCACGGGATGGTCGCGCACGGGGAGGGTGGCG
TTGGCTGGGATGGTGTTGGGCCTGGGAGTTGTCGTGGCGGTGGCTGTGGC
GCGCGCTCGACGGAGAGGGTGAGCACCACGGGCGCGACATCGACGGCGCG
TGCGGCCAGCTGGCTGTGAAGGTGGTCGCCAGCGAGTCAGGGTCAGTGGC
CACGAACTCTTGCAGGGCCGGGGGTGGCAGCAATGGTGGGGGAGACATCG
AGGATCTGGTGGCGAGGAGTAACCGCGGGGGGTCGAGGGGCACTAGCGGC
GGGACGGAGAGCAAACGTCGATCAAGTCGGAAACATACCTATTCGTCGGA
TGCTGCGGTCAAGGACAGAAAAGGCGACGATGTTGTTAGGGAAAGCACGG
GATGGTCGCGCACGGGGAGGGTGGCGTTGGCTGGGATGGTGTTGGGCCTG
GGAGTTGTCGTGGCGGTGGCTGTGGCGCGCGCTCGACGGAGAGGGTGA
back to top