mRNA_F-serratus_M_contig1075.728.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1075.728.1
Unique NamemRNA_F-serratus_M_contig1075.728.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1075.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1075contigF-serratus_M_contig1075:96464..97190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-26_001270.1
Exons2
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.1564639-CDS-F-serratus_M_contig1075:96464..967501622928923.1564639-CDS-F-serratus_M_contig1075:96464..96750Fucus serratus maleCDSF-serratus_M_contig1075 96465..96750 -
1690962630.9512663-CDS-F-serratus_M_contig1075:96464..967501690962630.9512663-CDS-F-serratus_M_contig1075:96464..96750Fucus serratus maleCDSF-serratus_M_contig1075 96465..96750 -
1622928923.17413-CDS-F-serratus_M_contig1075:97083..971901622928923.17413-CDS-F-serratus_M_contig1075:97083..97190Fucus serratus maleCDSF-serratus_M_contig1075 97084..97190 -
1690962630.9623184-CDS-F-serratus_M_contig1075:97083..971901690962630.9623184-CDS-F-serratus_M_contig1075:97083..97190Fucus serratus maleCDSF-serratus_M_contig1075 97084..97190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1075.728.1prot_F-serratus_M_contig1075.728.1Fucus serratus malepolypeptideF-serratus_M_contig1075 96465..97190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1075.728.1

>prot_F-serratus_M_contig1075.728.1 ID=prot_F-serratus_M_contig1075.728.1|Name=mRNA_F-serratus_M_contig1075.728.1|organism=Fucus serratus male|type=polypeptide|length=131bp
RDEGSSSRGNSWRAPSLAATMPNEFSEQHGQRPKRRRSRLSLPKREKDDR
SEAAPAPAAAASPTEDRALHRPSPQPISTSATDVARAVEKRDEELNVNAS
HARKPEGCDGRGVSSRKGKSKRKEESSPDLR
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mRNA from alignment at F-serratus_M_contig1075:96464..97190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1075.728.1 ID=mRNA_F-serratus_M_contig1075.728.1|Name=mRNA_F-serratus_M_contig1075.728.1|organism=Fucus serratus male|type=mRNA|length=727bp|location=Sequence derived from alignment at F-serratus_M_contig1075:96464..97190- (Fucus serratus male)
CGGGATGAAGGGTCGTCAAGCAGAGGAAATAGTTGGAGGGCGCCCTCTTT
GGCAGCAACAATGCCTAACGAGTTTTCCGAGCAGCACGGGCAAAGACCGA
AGAGGAGGTGAGTTGTGAAATACCGTGGCGTGCGAAACCGTTATCGATTG
CGGGAACGTATCGCATCTTGTGTAGCGGCCAGATAACCGGTGAGAACCTT
TAGCCAATGTAGTATTTAATGGGCGCCAGCGTGATTCTGCTTTGACAGCG
TTCGTAGGATTCGGTGTTCCGTTCCGTCGGGGCCTATCACGATGTCTTGG
TGCTTCGTAGGACTATATACTACGAGCACTGCACCGCGCGATTCACTCGG
AGATCGACTATCCTTCCGCTCCGTGTTCCCCAGGACGCATGTCTTACATA
TCACATCGGCAATTCTGTCTGCGATCCCTCCACGGCGCAGGCGCTCTAGG
CTTAGCTTACCCAAACGCGAAAAAGACGACCGCTCGGAGGCAGCCCCCGC
CCCTGCCGCCGCAGCCTCCCCGACTGAGGACAGAGCACTACATCGACCAT
CTCCCCAACCGATATCTACTTCCGCGACCGACGTGGCACGTGCGGTGGAG
AAGCGAGACGAAGAGTTGAACGTGAACGCCAGTCACGCGAGGAAACCCGA
AGGGTGTGACGGCAGAGGGGTTTCAAGTAGGAAGGGCAAGTCAAAGCGGA
AGGAAGAGAGCTCGCCCGACCTGCGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1075:96464..97190-

>mRNA_F-serratus_M_contig1075.728.1 ID=mRNA_F-serratus_M_contig1075.728.1|Name=mRNA_F-serratus_M_contig1075.728.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig1075:96464..97190- (Fucus serratus male)
CGGGATGAAGGGTCGTCAAGCAGAGGAAATAGTTGGAGGGCGCCCTCTTT
GGCAGCAACAATGCCTAACGAGTTTTCCGAGCAGCACGGGCAAAGACCGA
AGAGGAGCGGGATGAAGGGTCGTCAAGCAGAGGAAATAGTTGGAGGGCGC
CCTCTTTGGCAGCAACAATGCCTAACGAGTTTTCCGAGCAGCACGGGCAA
AGACCGAAGAGGAGGCGCTCTAGGCTTAGCTTACCCAAACGCGAAAAAGA
CGACCGCTCGGAGGCAGCCCCCGCCCCTGCCGCCGCAGCCTCCCCGACTG
AGGACAGAGCACTACATCGACCATCTCCCCAACCGATATCTACTTCCGCG
ACCGACGTGGCACGTGCGGTGGAGAAGCGAGACGAAGAGTTGAACGTGAA
CGCCAGTCACGCGAGGAAACCCGAAGGGTGTGACGGCAGAGGGGTTTCAA
GTAGGAAGGGCAAGTCAAAGCGGAAGGAAGAGAGCTCGCCCGACCTGCGT
GCGCTCTAGGCTTAGCTTACCCAAACGCGAAAAAGACGACCGCTCGGAGG
CAGCCCCCGCCCCTGCCGCCGCAGCCTCCCCGACTGAGGACAGAGCACTA
CATCGACCATCTCCCCAACCGATATCTACTTCCGCGACCGACGTGGCACG
TGCGGTGGAGAAGCGAGACGAAGAGTTGAACGTGAACGCCAGTCACGCGA
GGAAACCCGAAGGGTGTGACGGCAGAGGGGTTTCAAGTAGGAAGGGCAAG
TCAAAGCGGAAGGAAGAGAGCTCGCCCGACCTGCGT
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