mRNA_F-serratus_M_contig1075.722.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1075.722.1
Unique NamemRNA_F-serratus_M_contig1075.722.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1075.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1075contigF-serratus_M_contig1075:40535..42112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size443
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1075.722.1prot_F-serratus_M_contig1075.722.1Fucus serratus malepolypeptideF-serratus_M_contig1075 40535..42112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.06992-CDS-F-serratus_M_contig1075:40534..406031622928923.06992-CDS-F-serratus_M_contig1075:40534..40603Fucus serratus maleCDSF-serratus_M_contig1075 40535..40603 +
1690962630.9072003-CDS-F-serratus_M_contig1075:40534..406031690962630.9072003-CDS-F-serratus_M_contig1075:40534..40603Fucus serratus maleCDSF-serratus_M_contig1075 40535..40603 +
1622928923.0891876-CDS-F-serratus_M_contig1075:41144..412671622928923.0891876-CDS-F-serratus_M_contig1075:41144..41267Fucus serratus maleCDSF-serratus_M_contig1075 41145..41267 +
1690962630.9170141-CDS-F-serratus_M_contig1075:41144..412671690962630.9170141-CDS-F-serratus_M_contig1075:41144..41267Fucus serratus maleCDSF-serratus_M_contig1075 41145..41267 +
1622928923.105222-CDS-F-serratus_M_contig1075:41554..416431622928923.105222-CDS-F-serratus_M_contig1075:41554..41643Fucus serratus maleCDSF-serratus_M_contig1075 41555..41643 +
1690962630.930563-CDS-F-serratus_M_contig1075:41554..416431690962630.930563-CDS-F-serratus_M_contig1075:41554..41643Fucus serratus maleCDSF-serratus_M_contig1075 41555..41643 +
1622928923.1173098-CDS-F-serratus_M_contig1075:41952..421121622928923.1173098-CDS-F-serratus_M_contig1075:41952..42112Fucus serratus maleCDSF-serratus_M_contig1075 41953..42112 +
1690962630.9402876-CDS-F-serratus_M_contig1075:41952..421121690962630.9402876-CDS-F-serratus_M_contig1075:41952..42112Fucus serratus maleCDSF-serratus_M_contig1075 41953..42112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1075.722.1

>prot_F-serratus_M_contig1075.722.1 ID=prot_F-serratus_M_contig1075.722.1|Name=mRNA_F-serratus_M_contig1075.722.1|organism=Fucus serratus male|type=polypeptide|length=147bp
AFLLVQGRVVKEKQLAICFRASQMKADYAVKTLRSGWRRMIFTNENVSDD
GTLARYLASYELFVLSRRPGQYTQQEAQTPLAPLESPTTPENARHDSGAS
KSDQGGSDPGGKRGIFEDSKGLADNDILDMLKCLPKVFVEGLLARR*
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mRNA from alignment at F-serratus_M_contig1075:40535..42112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1075.722.1 ID=mRNA_F-serratus_M_contig1075.722.1|Name=mRNA_F-serratus_M_contig1075.722.1|organism=Fucus serratus male|type=mRNA|length=1578bp|location=Sequence derived from alignment at F-serratus_M_contig1075:40535..42112+ (Fucus serratus male)
GCTTTTTTGCTGGTGCAGGGGAGAGTGGTGAAGGAAAAACAGCTGGCCAT
TTGTTTTCGTGCCTCGCAGGTAAGGGTACCATGTGATGAGCAATAAAATG
GAGGAGGAAGCTCCCCATGAAATTTTCCCGCTACGTTGTATATTTTTCGA
CCAAAGTGCCATCAATAGTCGAAGGGGGGTTTCGAGAGCCCTAGCCTCGG
GTGGATGTTTGGCGAGAGAAAATTGAGATTCTGCGGGCTGGCGAATAGTG
TGGCATACGTACATACTTGCGAGACGGCCGAACCCGTCTCTCTATATCAA
ATTTCTCAGGCGCGAACGGGGACAGGGAAACGTTCATTTTCCCCGTTCAG
CTGACCACGAGCAGGATTGGCAACCATACCCGGTTGGGTTGATCCATGCT
CCGCTATAAGCGATGATCATACGTTAAACGATGTACCTTTCTGACGGCCG
CAGTATCGTCCATTGCAAAAATCGCCCGCTCTGGCCGTCCAATCAATTTC
ATCGAGAGATACACGGTTTCGCTTTTGATTGTTATGAAATCGTTCTCTCT
CTTTGTGCGACGTTTTCGGAATGGCGTCGGTGGGCGGGCGGTGGGGGGGT
GGGGGCTCAGATGAAAGCCGATTATGCCGTCAAAACACTACGGAGTGGCT
GGCGACGCATGATTTTCACCAACGAAAATGTTTCGGATGACGGGACTCTT
GCCCGGTACCTCGCTAGCTATGAACTCTTTGTGGTGAGTTTGGCGTCTGA
TTCTCATTGGCGCTGCTCAAGGCCTCCCAATGATGGCTCATTTTTTATTG
AAAGTGATACACATCGCGCTTGGTATGACTCTCCGGGAGAATGTTCCTGC
CAACCACCGACAGCGCTATGATTGGCCGTAGGCGTTGCCTCGCGCGACGA
TTCCGAACTTTGCACACCGGACTGGTTCGATTGCTTTCGGCCCCCAAACA
GAACTTGGCAATGATCTCCACCGAAATCGCCGTACCTCTCTTTTGCTGGC
CCCACCTTGACACGACAAAGCTCTCTAGGAGACCCGGTCAGTACACGCAG
CAAGAGGCGCAAACGCCGCTCGCTCCTCTCGAATCTCCAACGACACCGGA
AAACGCCAGGTGCGGCCTCTGTGCACCGTCGAGAAGGAAGCGTACTCATC
CCATCCCATCGGTAGGAAGGGCGGGAGGAAGGAATGAGCCTGTTGCCGAT
CGGTAATGCGACATTTAATCCGTCGCGGTCTCTTTCCGAGCCTATCAAAC
CTTCGTGTGTTGTGTAGTCAGAGCAGTAGGCCTTCCGTCCGAATGTTTGG
AGCAGCCGTATACATCATGTGACTGTCGACGCATCGTGGTGTCTTTCCGA
GCCTGTCAAAATCTTCGCGTTTTTGTGTGGTCTGAGCGATACGCCTTCCG
CCCAAATCTTTGGAGCAGGCATGACAGCGGCGCCTCCAAGAGTGACCAAG
GGGGAAGCGACCCTGGAGGCAAGAGGGGGATATTTGAGGACTCTAAGGGG
CTAGCGGACAACGATATCTTGGATATGCTCAAATGCCTGCCGAAAGTGTT
TGTCGAAGGACTTTTGGCCCGAAGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1075:40535..42112+

>mRNA_F-serratus_M_contig1075.722.1 ID=mRNA_F-serratus_M_contig1075.722.1|Name=mRNA_F-serratus_M_contig1075.722.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig1075:40535..42112+ (Fucus serratus male)
GCTTTTTTGCTGGTGCAGGGGAGAGTGGTGAAGGAAAAACAGCTGGCCAT
TTGTTTTCGTGCCTCGCAGGCTTTTTTGCTGGTGCAGGGGAGAGTGGTGA
AGGAAAAACAGCTGGCCATTTGTTTTCGTGCCTCGCAGATGAAAGCCGAT
TATGCCGTCAAAACACTACGGAGTGGCTGGCGACGCATGATTTTCACCAA
CGAAAATGTTTCGGATGACGGGACTCTTGCCCGGTACCTCGCTAGCTATG
AACTCTTTGTGATGAAAGCCGATTATGCCGTCAAAACACTACGGAGTGGC
TGGCGACGCATGATTTTCACCAACGAAAATGTTTCGGATGACGGGACTCT
TGCCCGGTACCTCGCTAGCTATGAACTCTTTGTGCTCTCTAGGAGACCCG
GTCAGTACACGCAGCAAGAGGCGCAAACGCCGCTCGCTCCTCTCGAATCT
CCAACGACACCGGAAAACGCCAGCTCTCTAGGAGACCCGGTCAGTACACG
CAGCAAGAGGCGCAAACGCCGCTCGCTCCTCTCGAATCTCCAACGACACC
GGAAAACGCCAGGCATGACAGCGGCGCCTCCAAGAGTGACCAAGGGGGAA
GCGACCCTGGAGGCAAGAGGGGGATATTTGAGGACTCTAAGGGGCTAGCG
GACAACGATATCTTGGATATGCTCAAATGCCTGCCGAAAGTGTTTGTCGA
AGGACTTTTGGCCCGAAGGTGAGCATGACAGCGGCGCCTCCAAGAGTGAC
CAAGGGGGAAGCGACCCTGGAGGCAAGAGGGGGATATTTGAGGACTCTAA
GGGGCTAGCGGACAACGATATCTTGGATATGCTCAAATGCCTGCCGAAAG
TGTTTGTCGAAGGACTTTTGGCCCGAAGGTGA
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