mRNA_F-serratus_M_contig1074.717.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1074.717.1
Unique NamemRNA_F-serratus_M_contig1074.717.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1074.717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1074contigF-serratus_M_contig1074:211123..211487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size365
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.0372903-UTR-F-serratus_M_contig1074:211122..2111451622928921.0372903-UTR-F-serratus_M_contig1074:211122..211145Fucus serratus maleUTRF-serratus_M_contig1074 211123..211145 +
1690962630.072247-UTR-F-serratus_M_contig1074:211122..2111451690962630.072247-UTR-F-serratus_M_contig1074:211122..211145Fucus serratus maleUTRF-serratus_M_contig1074 211123..211145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.048156-CDS-F-serratus_M_contig1074:211145..2114871622928921.048156-CDS-F-serratus_M_contig1074:211145..211487Fucus serratus maleCDSF-serratus_M_contig1074 211146..211487 +
1690962630.0807912-CDS-F-serratus_M_contig1074:211145..2114871690962630.0807912-CDS-F-serratus_M_contig1074:211145..211487Fucus serratus maleCDSF-serratus_M_contig1074 211146..211487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1074.717.1prot_F-serratus_M_contig1074.717.1Fucus serratus malepolypeptideF-serratus_M_contig1074 211146..211487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1074.717.1

>prot_F-serratus_M_contig1074.717.1 ID=prot_F-serratus_M_contig1074.717.1|Name=mRNA_F-serratus_M_contig1074.717.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MQRAYILENGVLTDEDAGVLMHRSADTRRPTVVSVLVGLVACFTCTPRTS
ILHAPTTVLILLLIIILLLYCRLQYYNACLSRRESIYSTTLLLKCPLHIN
SGCGKERRILIGP*
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mRNA from alignment at F-serratus_M_contig1074:211123..211487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1074.717.1 ID=mRNA_F-serratus_M_contig1074.717.1|Name=mRNA_F-serratus_M_contig1074.717.1|organism=Fucus serratus male|type=mRNA|length=365bp|location=Sequence derived from alignment at F-serratus_M_contig1074:211123..211487+ (Fucus serratus male)
GTGGGTTGTCCGGTCTTCTGAAGATGCAGAGAGCATATATCTTGGAGAAT
GGAGTCTTGACAGATGaAGATGCAGGTGTATTGATGCACCGGTCGGCCGA
CACCCGTCGGCCTACGGTAGTTTCCGTATTGGTCGGTCTTGTGGCTTGTT
TTACTTGTACTCCGCGCACCAGTATTTTACATGCACCTACTACTGTGTTG
ATTTTACTATTAATAATAATTTTACTACTGTACTGTAGACTACAGTATTA
TAATGCTTGCTTGTCGAGACGTGAATCGATATACAGTACAACGTTACTTT
TAAAATGCCCGCTGCATATCAATAGTGGGTGTGGGAAAGAGAGGCGTATA
TTAATTGGTCCATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1074:211123..211487+

>mRNA_F-serratus_M_contig1074.717.1 ID=mRNA_F-serratus_M_contig1074.717.1|Name=mRNA_F-serratus_M_contig1074.717.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1074:211123..211487+ (Fucus serratus male)
ATGCAGAGAGCATATATCTTGGAGAATGGAGTCTTGACAGATGaAGATGC
AGGTGTATTGATGCACCGGTCGGCCGACACCCGTCGGCCTACGGTAGTTT
CCGTATTGGTCGGTCTTGTGGCTTGTTTTACTTGTACTCCGCGCACCAGT
ATTTTACATGCACCTACTACTGTGTTGATTTTACTATTAATAATAATTTT
ACTACTGTACTGTAGACTACAGTATTATAATGCTTGCTTGTCGAGACGTG
AATCGATATACAGTACAACGTTACTTTTAAAATGCCCGCTGCATATCAAT
AGTGGGTGTGGGAAAGAGAGGCGTATATTAATTGGTCCATAGATGCAGAG
AGCATATATCTTGGAGAATGGAGTCTTGACAGATGaAGATGCAGGTGTAT
TGATGCACCGGTCGGCCGACACCCGTCGGCCTACGGTAGTTTCCGTATTG
GTCGGTCTTGTGGCTTGTTTTACTTGTACTCCGCGCACCAGTATTTTACA
TGCACCTACTACTGTGTTGATTTTACTATTAATAATAATTTTACTACTGT
ACTGTAGACTACAGTATTATAATGCTTGCTTGTCGAGACGTGAATCGATA
TACAGTACAACGTTACTTTTAAAATGCCCGCTGCATATCAATAGTGGGTG
TGGGAAAGAGAGGCGTATATTAATTGGTCCATAG
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