mRNA_F-serratus_M_contig1073.704.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: D7FXK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK8_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 6.720e-133 Identity = 183/256 (71.48%), Postives = 210/256 (82.03%), Query Frame = 3
Query: 51 GARTMCGARDTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYP-STVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALRERLLG 815
GA T G R+ TWSNP G D+V+++ G VW AERPFVWN IDVGGRMAVVKL DGSLWVHSPV LDEPL+ AL LGPVGHIVSPN+EHVKYA+QWV+A+PSA SY CPGL E +P+VGF+REVG DE+ PEWG EI CFMDCETNPFTGKPFFNEVVFFHRPTK L+T+DLYWNYP VP TRVWK GMDK VYLPF+K+FM+TD AF ++VN ILDWG++ I+PCHG +VRSGA QALR++LLG
Sbjct: 7 GAITTAGRREMTWSNPMGDDMVQVL-GDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERQPEVGFTREVGASIEDESLPEWGDEILACFMDCETNPFTGKPFFNEVVFFHRPTKTLITSDLYWNYPRKEVPLGTRVWKWGMDK----VYLPFYKKFMVTDGEAFVSKVNQILDWGVETIVPCHGGIVRSGAPQALRQQLLG 257
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A1Y1IMY2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMY2_KLENI) HSP 1 Score: 305 bits (781), Expect = 5.040e-97 Identity = 140/250 (56.00%), Postives = 174/250 (69.60%), Query Frame = 3
Query: 54 ARTMCGARDTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPS-TVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALR 800
A+T D TWSNPSG L E+V G+VWAAERPF+WN IDVGG+M VV+L DGS+WVHSPV LD L+ A+++LGPV HIV+PN+EH +AQQW++A+P A++Y CPGL KPDV ++ E+G + G TP EWGGE F DCE NPFT KPFFNEVV+ H P+ L DL+WNYP VP T +WK GMDK VYLPF+K FM+ F R+ +L WG +I+PCHG VV A+ LR
Sbjct: 82 AQTEAAPLDKTWSNPSGNVLTEVVPGQVWAAERPFMWNGIDVGGKMGVVRLRDGSVWVHSPVPLDNQLKAAMDQLGPVKHIVTPNYEHAGFAQQWIEAYPDAKAYACPGLRAKKPDVRYAAEIGAN-GSATPAEWGGEFSFAFFDCEHNPFTLKPFFNEVVYVHHPSGVLFVTDLFWNYPGKAVPPGTFIWKQGMDK----VYLPFYKYFMLKRKDKFEQRLKTVLSWGFSIILPCHGTVVDEKAADVLR 326
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A7S0IGZ2_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IGZ2_MICPS) HSP 1 Score: 296 bits (758), Expect = 3.610e-94 Identity = 143/251 (56.97%), Postives = 169/251 (67.33%), Query Frame = 3
Query: 72 ARDTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELG-PVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPS---TVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALRERLL 812
+ D WSNPSG L + R KVWAAERPFVW IDVGG+M VVK+ DGSLWVHSPV LD+ LR AL E+G V H+VSPNFEHVKYA QW AFP A +GCPG+++ KP + F REVG GD P EW GE E F DCE NPF G PFFNEVVF HRP+ ++ DL+WNY +PA TR WK GMD RVYLPF++ FM+ D FA R+ ++ W D ++PCHG V +ALRE LL
Sbjct: 43 SHDYDWSNPSGSVLTPL-REKVWAAERPFVWQGIDVGGKMGVVKMRDGSLWVHSPVDLDDDLRAALTEIGGDVKHVVSPNFEHVKYAAQWKAAFPDAVLWGCPGMIDEKPLIPFDREVGV--GDACPEEWNGEFELAFFDCEVNPFVGAPFFNEVVFHHRPSGVVLVTDLFWNYGGGGQALPAATRAWKFGMD----RVYLPFYRAFMVRDRARFAERIGRVMAWEFDSLLPCHGTFVDGRGKRALREHLL 286
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A8J9RQ74_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RQ74_9CHLO) HSP 1 Score: 293 bits (749), Expect = 5.090e-93 Identity = 136/244 (55.74%), Postives = 175/244 (71.72%), Query Frame = 3
Query: 81 TTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPSTVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHIL-DWGIDVIIPCHGDVVRSGASQALRERL 809
+T++N SGK L ++ VWAA+RPF+WN IDVGGRMAV+KL DGS+WVHSPVQLD+ L AL ELG V HIVSPN+EH KYA+QW++ +P ARSY CPGL E +P V ++ E+G G+ PPEW GE++T + E NPF GKPFFNEVVFF +P K L+T+DL+WNYP+ P T++WK GMD RVYLPF++RFMI+D + I +W + I+PCHGD V S + LR+ L
Sbjct: 35 STFTNTSGKVLQQLAPN-VWAADRPFIWNRIDVGGRMAVLKLSDGSIWVHSPVQLDDDLAAALGELGEVKHIVSPNYEHTKYAKQWIERYPGARSYACPGLKEKEPQVPYTTELGGGGGE--PPEWLGEVQTTCLTYERNPFNGKPFFNEVVFFFKPEKLLITSDLFWNYPNQAPGGTKLWKFGMD----RVYLPFYRRFMISDKGEYDEATRRIFKEWNFEAILPCHGDFVPSNGKEVLRKHL 271
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A7S4C8N9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8N9_9EUGL) HSP 1 Score: 292 bits (748), Expect = 1.410e-88 Identity = 134/241 (55.60%), Postives = 167/241 (69.29%), Query Frame = 3
Query: 87 WSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPSTVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALRERL 809
WSNP GK++++ V +W AERPF+WNSIDVGG+MAVV+L DGSLWVHSPV+LD PL+ AL LGPV +I+SPN+EHVKYAQQW+ A+P A +YGCPG E P + F EVG G+ P W ++ +MDCE NPFT PFFNEVVF H PTK L+ DL+WNYP PA TR WK GMD+ VYLPF+K+FMI D F V+ I+ W D ++PCHG + G +A + L
Sbjct: 176 WSNP-GKEVLKKVAPDLWVAERPFIWNSIDVGGKMAVVRLADGSLWVHSPVELDAPLKAALAALGPVKYIMSPNYEHVKYAQQWIDAYPDAIAYGCPGAKEKFPQISFQAEVGV--GNAVPEAWASDLLVTYMDCEHNPFTRSPFFNEVVFVHLPTKTLIVTDLFWNYPIDAPAGTRAWKWGMDE----VYLPFYKQFMICDRSRFKTAVDRIVAWDFDSVLPCHGTYIAQGGKEAFVKHL 409
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: C1MGP7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGP7_MICPC) HSP 1 Score: 281 bits (719), Expect = 2.590e-88 Identity = 128/246 (52.03%), Postives = 159/246 (64.63%), Query Frame = 3
Query: 78 DTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPS--TVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALRERL 809
+ TWSNP+G L ++V G VWAAERPF WN+IDVGG+MAVV+L DG+LWVHSP+ LD+ R A++ LG V H+VSPN+EHVK+A QW +A+P A YGCPG+ KP + + EVG D P WGGE + DCE NPFT PFFNEVVF H + D++WNYP VP TR+WK GMD RVYLPF++ M+ D FA +L W D +PCHG + GA ALR L
Sbjct: 48 EKTWSNPTGNVLTDVVPGVVWAAERPFTWNAIDVGGKMAVVRLRDGALWVHSPIDLDDATRAAIDALGSVKHVVSPNYEHVKWAAQWKEAYPDATLYGCPGMRAKKPGIPWDAEVGEDGA---PEAWGGEFDVALFDCEVNPFTSTPFFNEVVFCHAASGVAFVTDVFWNYPGGDDVPPGTRLWKFGMD----RVYLPFYRAAMVRDREKFARAREKVLSWDFDAALPCHGSFIPRGAKDALRRHL 286
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A812Q2U2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q2U2_9DINO) HSP 1 Score: 279 bits (713), Expect = 5.270e-87 Identity = 129/242 (53.31%), Postives = 165/242 (68.18%), Query Frame = 3
Query: 84 TWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPSTVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALRERL 809
TWSNP+G L + +W AERPF+WNSIDVGG+MAVV+LPDG LWVHSPV LDE LR+ LE+LGPV HIVSPNFEHVK+A QW AFP A +G PG+ + P + F E+ +D P EWGG + CF DCE P G PFFNEV+F+H P+ LM D++WNYPS +P+ + +WK MDK +YLPF+KRFM+T + A ++ + +W + ++PCHG V SGA Q R L
Sbjct: 80 TWSNPTGSVLTAL-NTDLWVAERPFIWNSIDVGGKMAVVRLPDGGLWVHSPVDLDEELRKGLEQLGPVRHIVSPNFEHVKWAAQWKGAFPDATLWGTPGMKDKFPKIPFDVELPSDSS--APAEWGGALLMCFADCERTPLLGTPFFNEVIFYHVPSDTLMCTDIFWNYPSGLPSGSALWKFLMDK----IYLPFYKRFMVTSPGSLNAVLDAVAEWKPEKLLPCHGRYVPSGAWQQFRGHL 314
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A7S0DC47_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DC47_MICPS) HSP 1 Score: 278 bits (712), Expect = 6.130e-87 Identity = 128/258 (49.61%), Postives = 174/258 (67.44%), Query Frame = 3
Query: 72 ARDTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPST-----------VPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQALRERLL 812
A D TWSNP+G+ L +V G VWAAERPF WN+IDVGG+M VVKL DG+LWVHSPV LD P ++A++ LGPV H+VSPN+EHVK+A QW +A+P A +GCPG+ + P + + E+ + G+ + E + DCETNPFT KPFFNE VF H+ ++ L DL+WNYP T +P T+ WK GMD RVYLPF+++ M+ D +AFAAR + +L D ++PCHG+VV SGA++ + + L+
Sbjct: 59 AYDKTWSNPTGQVLTPVVDGVVWAAERPFTWNTIDVGGKMGVVKLEDGALWVHSPVDLDAPTKKAVDALGPVRHVVSPNYEHVKWAAQWKEAYPDATLWGCPGMKQKYPTIPWDEELVDGEGNFGDARF--EFTATWFDCETNPFTSKPFFNETVFVHKKSRVLFVTDLFWNYPETDVGEGEAHSVQIPLGTKAWKFGMD----RVYLPFYRKAMVRDAKAFAARRDALLQTAFDKVLPCHGEVVLSGATKVIAKHLV 310
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A835ZG26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG26_9STRA) HSP 1 Score: 276 bits (705), Expect = 1.580e-86 Identity = 126/252 (50.00%), Postives = 167/252 (66.27%), Query Frame = 3
Query: 72 ARDTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPSTVPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVVRSGASQA----LRERLLG 815
ARD TWSNP G DL I + VW AERPF+WN+IDVGGRM V+KL DGSLWVHSPV+LD L++ L ELGPV H+VSPN+EHVKYAQQW+ A+P A ++ CPGL + KPD+G+ R +G + P +W EI +++CE P + FF+EVVF H P++ L+ D+YWNYP + P KT++WK GMD VYLP ++ ++ D R F + I W + ++PCHG VV A LR ++G
Sbjct: 19 ARDKTWSNPKGLDLTPI-KHNVWGAERPFIWNTIDVGGRMTVIKLEDGSLWVHSPVELDPALQQTLAELGPVRHVVSPNYEHVKYAQQWIHAYPDATAWACPGLKDKKPDIGYDRTIGTTA--DAPADWPREIGFVWLNCERVPVLNQAFFSEVVFHHEPSQCLLCTDVYWNYPRSAPPKTQLWKFGMDV----VYLPIYRNLLVADAREFDKLLARIDAWNFNTVVPCHGRVVMEAARDKFFAFLRRGVIG 263
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Match: A0A0G4EB62_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EB62_VITBC) HSP 1 Score: 276 bits (705), Expect = 5.840e-86 Identity = 132/234 (56.41%), Postives = 157/234 (67.09%), Query Frame = 3
Query: 87 WSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDGSLWVHSPVQLDEPLRRALEELGPVGHIVSPNFEHVKYAQQWVKAFPSARSYGCPGLMEMKPDVGFSREVGNDPGDETPPEWGGEIETCFMDCETNPFTGKPFFNEVVFFHRPTKALMTADLYWNYPST-----VPAKTRVWKLGMDKASIRVYLPFFKRFMITDDRAFAARVNHILDWGIDVIIPCHGDVV 773
W NP G L E+ VW A RPF+WN+IDVG RM +++L DGSLW HSPV LD P R ++ LGPV HIVSPNFEH+KY W +A+P A +YGCPGLM +P +EV NDP P W E E CF+DCE NPFT K FFNEVVFFH+P+K L+T+D YWNYPST +P TR+WK GMD RVYLPF+KR MITD F V +L W + IIPCHG +V
Sbjct: 66 WGNPDGVTLREVT-DNVWEANRPFLWNTIDVGSRMVLIRLKDGSLWAHSPVNLDIPTRAEVDALGPVKHIVSPNFEHLKYGPLWGQAYPDAVTYGCPGLMAREPWC--MQEVANDP----PDSWLDEFECCFIDCEQNPFTRKSFFNEVVFFHKPSKTLITSDFYWNYPSTSPSRPIPQSTRLWKFGMD----RVYLPFYKRLMITDKGRFNELVERVLGWRAERIIPCHGSIV 288 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1073.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1073.704.1 >prot_F-serratus_M_contig1073.704.1 ID=prot_F-serratus_M_contig1073.704.1|Name=mRNA_F-serratus_M_contig1073.704.1|organism=Fucus serratus male|type=polypeptide|length=253bp MCGARDTTWSNPSGKDLVEIVRGKVWAAERPFVWNSIDVGGRMAVVKLPDback to top mRNA from alignment at F-serratus_M_contig1073:196069..206174+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1073.704.1 ID=mRNA_F-serratus_M_contig1073.704.1|Name=mRNA_F-serratus_M_contig1073.704.1|organism=Fucus serratus male|type=mRNA|length=10106bp|location=Sequence derived from alignment at F-serratus_M_contig1073:196069..206174+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1073:196069..206174+ >mRNA_F-serratus_M_contig1073.704.1 ID=mRNA_F-serratus_M_contig1073.704.1|Name=mRNA_F-serratus_M_contig1073.704.1|organism=Fucus serratus male|type=CDS|length=1518bp|location=Sequence derived from alignment at F-serratus_M_contig1073:196069..206174+ (Fucus serratus male)back to top |