mRNA_F-serratus_M_contig1071.698.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1071.698.1
Unique NamemRNA_F-serratus_M_contig1071.698.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1071.698.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.370e-9
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  304 GRAKSRQLENVVSARDFIDELSTEVEELENLVEETARSLGREAAQNQHAKLGKRLGKRVTDVLLHLDRVTGDDQVRTARRKQVDKALALGERVGNAI 594
            G  K R L N+ S R+F+D LS EV +LE  +   A +   + A+ ++ +  +   + VT VL HLD+ TG D++  AR+KQ+ +A  LG R+   +
Sbjct:   35 GGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKIL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1071.698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4A6_ECTSI1.370e-936.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1071contigF-serratus_M_contig1071:234584..241481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001960.1
Exons4
Model size1476
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1071.698.1prot_F-serratus_M_contig1071.698.1Fucus serratus malepolypeptideF-serratus_M_contig1071 234689..240617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.5264246-UTR-F-serratus_M_contig1071:234583..2346881622928917.5264246-UTR-F-serratus_M_contig1071:234583..234688Fucus serratus maleUTRF-serratus_M_contig1071 234584..234688 +
1690962628.7317495-UTR-F-serratus_M_contig1071:234583..2346881690962628.7317495-UTR-F-serratus_M_contig1071:234583..234688Fucus serratus maleUTRF-serratus_M_contig1071 234584..234688 +
1622928917.5864258-UTR-F-serratus_M_contig1071:240617..2414811622928917.5864258-UTR-F-serratus_M_contig1071:240617..241481Fucus serratus maleUTRF-serratus_M_contig1071 240618..241481 +
1690962628.7831805-UTR-F-serratus_M_contig1071:240617..2414811690962628.7831805-UTR-F-serratus_M_contig1071:240617..241481Fucus serratus maleUTRF-serratus_M_contig1071 240618..241481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.5416758-CDS-F-serratus_M_contig1071:234688..2349131622928917.5416758-CDS-F-serratus_M_contig1071:234688..234913Fucus serratus maleCDSF-serratus_M_contig1071 234689..234913 +
1690962628.7442021-CDS-F-serratus_M_contig1071:234688..2349131690962628.7442021-CDS-F-serratus_M_contig1071:234688..234913Fucus serratus maleCDSF-serratus_M_contig1071 234689..234913 +
1622928917.552322-CDS-F-serratus_M_contig1071:239128..2392421622928917.552322-CDS-F-serratus_M_contig1071:239128..239242Fucus serratus maleCDSF-serratus_M_contig1071 239129..239242 +
1690962628.753896-CDS-F-serratus_M_contig1071:239128..2392421690962628.753896-CDS-F-serratus_M_contig1071:239128..239242Fucus serratus maleCDSF-serratus_M_contig1071 239129..239242 +
1622928917.5621347-CDS-F-serratus_M_contig1071:239979..2400841622928917.5621347-CDS-F-serratus_M_contig1071:239979..240084Fucus serratus maleCDSF-serratus_M_contig1071 239980..240084 +
1690962628.7629457-CDS-F-serratus_M_contig1071:239979..2400841690962628.7629457-CDS-F-serratus_M_contig1071:239979..240084Fucus serratus maleCDSF-serratus_M_contig1071 239980..240084 +
1622928917.5738633-CDS-F-serratus_M_contig1071:240554..2406171622928917.5738633-CDS-F-serratus_M_contig1071:240554..240617Fucus serratus maleCDSF-serratus_M_contig1071 240555..240617 +
1690962628.7735214-CDS-F-serratus_M_contig1071:240554..2406171690962628.7735214-CDS-F-serratus_M_contig1071:240554..240617Fucus serratus maleCDSF-serratus_M_contig1071 240555..240617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1071.698.1

>prot_F-serratus_M_contig1071.698.1 ID=prot_F-serratus_M_contig1071.698.1|Name=mRNA_F-serratus_M_contig1071.698.1|organism=Fucus serratus male|type=polypeptide|length=169bp
MPSKIYLVGSDQTTKSSNHARRLSLRTGTRLAIAAAGATLVFMIGSTGGW
EYAKRMFRVMWDGDQEGRAKSRQLENVVSARDFIDELSTEVEELENLVEE
TARSLGREAAQNQHAKLGKRLGKRVTDVLLHLDRVTGDDQVRTARRKQVD
KALALGERVGNAIGENVA*
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mRNA from alignment at F-serratus_M_contig1071:234584..241481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1071.698.1 ID=mRNA_F-serratus_M_contig1071.698.1|Name=mRNA_F-serratus_M_contig1071.698.1|organism=Fucus serratus male|type=mRNA|length=6898bp|location=Sequence derived from alignment at F-serratus_M_contig1071:234584..241481+ (Fucus serratus male)
CTTGAGTCGATAAACCCTTGCGTCGCTGGCAAGGGAAAGGTTTCTCTCTG CGAAGAGTGACACTTCTAGAGTATATACCCTTTTTACTGTTTCCCTGGCC ACGGGATGCCTTCCAAAATCTACCTTGTAGGATCGGATCAGACGACGAAG TCCTCAAATCATGCGCGAAGGTTATCCCTTCGAACCGGGACCCGCCTGGC GATCGCAGCGGCGGGGGCAACGCTTGTCTTCATGATTGGGTCCACAGGTG GTTGGGAGTACGCAAAAAGAATGTTTCGAGTTATGTGGGATGGTGATCAG GAGGGACGTGCGAAGTCGAGACAGCTTGAGGTAAGACGACGCACAAGACG CGTTTACAGGGGAACTGTGTGTGCTCCACTCTTCAATTAGTACCTGGTAC TGGTACGTACTAAAGTCTGAAAGTACCAGTACCAGTTTATGTAACCGCCG GTACTTTCAATATGCCCACTTCATACCAGTAGTGGGCGTGCCAAAGAGAG GCGCATATTCATTGTTCGATGGTGATGCAAAGGCAGCACCCGTTGCTGGA ATTACCTGTAGGTTTACTGGCCCTGTGCCGGCGGATTCTCGGCAGTGAGT GCCATCGGTACGCAATTGCGTTACACGATAAACTCGAGACTGACCCGATA ACATATGGCGGTTTAAATAGATACGAGTATATAGACGCCCCGCGGAACTC GGGAGGAATCCCGTCTAAGCAACAGATTCAGCCTGAGTATGGAGATGAGC AGGCTGACGCGGGATGGGACTGCCGAAACCGTCTCGCGAGACCAAACTCT CAGGCGCGAACGGGGACAGGAAAATATTTATTTTCCTTGTTCAGTTCAGC CGCTCGTCGCCCGAGTGGTCTATTATATTAATAGTAGGTAACCTGCACAC CTGCTATTAATTATTAATAGTGCGGAGGTCGTGAGTTCGATTCTCGGTTA AATCATAATTTTAATTCTTGCTTCCGTGAGTAGGTAAAATTCAACCATTG GTTGACGAGTTGTAAGAGTGCTGAACATGCCATCGCGATAAAAAGTCGTA AGGGTGAACCAGGGAGAGATGGGAAGATCCTTAGTGGCCACAGGCAGGAT GGAATGAGGCCCATCGGCTATAAGCGAGATGAAAGAAAAAGAAAAAAACT GACCATGAGCAGGATTGGCAACCTTACCCGGTTGATCCTTACTCTTGCTA TTTTGATTTTGATTAATTAAATTCTCACATAAACTGATGTAAAAACACTC AGCCCGTGGCCACAAGGTAGTAAAACACCATCCGGAAGGAAGGGAAACAC GCACGACGTACTCTCCATACTATTAATAAGAGAAAACGGCAATGGTACAA AAAAAACTCTGAGGAAGCGACATCCTAAAAAAAAAAAAAAGGAAAAAAGG AAGAAACACGTGTGTGGCTGTCGGGGCGCCTGGATATCGAAGAACGATTG AACGATTGAACGAAACGCCGCGGCTGCAATGAAAGTATAAAGATGAAAAC GAAACGAAACAAAACGAACCTAACACTATTAATAGAGAAAGGCGTCATGA CATCTGCAAACCAAACGCCCGGAGGATACAAGTTCGCGCCCCCTTGTGGC TATTATAGTCAACAATGGCGAGCGAACCAGCACGAATCCGCTGGCTTTGG GCTATCCCCTCCTTGGTCCTTCCCGTCACGTTCGGGCATACCACTGCATG CCGTAGTCCAGTCACGGCTTTCGCAGCAGCGATCCATTTCACCATGAAAT ATTCCGCTCCCTGTTCCGCCGTCCTGCGCCATTTCCCCTCGTCCTGGGCT GCAGTCGTCCACTGGTCGGCGTCGATGCCGAAAGCTCTGAGGTCGTCCAT GAACACACCCCATCCACTCTTTTTGCTGTCCGCCCACACAGCCCACGCCC CCCACCAATGCTCCGAACATCACGCACTTCGGCATGCAGGGACACCAGAC AAAACAAACGATGAGCTTGGATTACAGCTCATTAATCCAATCGGATGGGT GTCGATACAAAAAACATTCAAGTCATGGATGTAGAAAATAATGATAGTGG AAAATTGTCTTACAGTCAGTATAACTATTCCTACGGTAGACTACATACTT ACAAGTAGGAATCATGGTGCACAAATTGAGGAAATTTGTATTATAAGATT AGCGAAGAGTGGTTCAACAGTTAATCTTATTATTATTATTATTATTATTA TTTCCGCACATAAGTCCGATCTCTCGAGCCCGTGGTCACAGATGCAGGCT TCCCTTTCCATACCATCGCTACATACAAAAAACAAATAAAATAAGAGAAA GAGAGGAAAAAAAAAACAATAACAGACGAGAAAGCCCCCCCCTTGATCTG ATCGGAGGGGAGGGGGAAGAAATAAAATAAAATAAGACAACATGTATATA CCCGCCGCGCATATCCGAGAGACAAATAGATAAGCAAGACATACCAAGTG TCAAGACCACACGAATGCCGGAACCGTACGCGAGTCGCTAAGCACACCCC CCACTCACCCGCTACTCTTCTGCGGCATTTAAATCGACATCATGGGAGCT CAAACGGCAAAGTAGCGAAAAGTTCCCTTGCGTGGCGGGCGTTGGTCTCG TTCACACGCTTGGTGGACCAGGCCGACATGAAGACTTCAGCCCCCGTCTC TACTTTGCGGTACCATTCAGGTGCATCTTGGGCGGCCCTCATCCAACACT TGGGGTCGATCCCGAAGGCAGTGCAGTATTCCGTGACACGATGTTCGAGG CGTTTCGCAAGCTGACCCCGTTTTCTCTTCCCCCCGACCATTCTATATTT GATATTTTTCTATATTTGATCTTTTTCACCGTGTTTTCTATTCGATCCAT GTTTTTAGTTCACACTATATATCTTAATGTATTACATTTGTGACAGCAGT TGCAGCAGTAGTATGTGTATAGTACCGAGCATCATCAGCATTACTGAGTA CAGTATAGTATTTATAGAGCTTAGCTTGTACCTGGTACGTTTTTCCCTTC CGGATGGTGTTTTTACATCATTTTCTATCATACCTTGTGACCACGGGCTC GGTTTTTTTACATGAGCTTACGTGAGAGTTCGATCAGCACTACTATAGAA TGCATTATGTATGTATGGTCATGACATATAGCAAGAGTATGGATCGACCG GGCAAGGTTTGCCAATCCTGCTCATGGTCAGAGCTGAACAGGAAAAATGT TTTTTTTTGCCTTGTCCCTGTTCGCGCATGAAAATTCGGTCTCGCGAGAT GGGTTCGGCAGTCCCGTCCCACGTCAGCCTGCTCATCTCCGTGCTCAGGC TGAATCTGATGCTTACTTGTAGATTGTTTTGTTGGCGCCATGTTAGTCCA TGGGATCTTTACCACTGCCGTACTACTACCACTACCACCAATATAATGAT ACTATAATAGTGTAATAGTGTGATACTGCCATACTGTCTGTACCGCTGAA AGCCAAGTACGTCACCGTTGCCGTACGCCACGGGCGCAGGTCTCGTTCCC CACGACCCTGCTCGTACGCTATTGAACGACCGATTACTAACTGTGCTTAC GCTATCTCGAAAAAAAAAAAGAAGCTTGGGAGTCCATCAAGCACCCATCT GAACGTCGCCATCGTTTTTCTGTCTTTTTAAATTCCCTTCTTCTTCAGAG GCAGAGCAGGTCATCGTCCAACACACTGAAGGTTGGAAAAACCACAACAA ATCACAGATAATAGATACGTGTACCAGTACAAACCTGGTGGAACTAGAGA TCCCGCGGGGAATCGGTAGGGCTTTGTCACCCACGACCGACTTCATCACG TTGGCGGGGTCACATTCATAGGTGTACCTCGTCTCTCTATGGCATCGATA CTCGTTTTTTAACCGCGAATTTTCGCTCTGGAACTACACTGGCGTGCACT GTCGACCAGCTTTGAAGTTAGCCCTCAGCTGCTTTTCTCAACTCTGCTCT TGGCCGGTCGTGAGCGTCAAACCATTAGTACCGTGTAGCACGTGTGTTCC CAGGAGGGCTAGGATTCGCGTCTTCAATCAAGTGAAGGCTACGACGTGAA TCGTGCTTCTTACGGTGCAAAGCTCTTGACGCGAAGATCCGCCCCCCCCT AAAACGTCGAGTTTTGGCGTTACGCGTCCGCGTTGTCAAAAGAGGCGTGC GCTTTTTTGCAGCAAGTGACACATTTCCGTAGGCCGAACAACCTAAATTC ATCAGTGCCCGACCAGAATGGCTAGCACCGTAGGAAACAAGTATGACACG TTAGAACCGCCTATAGAAACAGCGATTCGCTGGTTGTTTTTACTCCAACA GTGACCGGTGGTAACCCATGTTGGCACGTTGATTCACGTACGAGGAGCTT TGGCACGGAAGCCATTTCCCAAAATCACACTGGTAGGGGCATTTGCCTCC CTGGACTTGACACTTTAAAAATAAATGTGGTTTTGTGAAAAAAAAGTACG GCTGGCTCTTTATTCTCTCTCCCACGGCGCGAATTCGGTCATGGCTGACT CACGAAGTCCCATCACCCTGCGCGGGCGCCGATGCTGACGCACAGAACGT TGTCAGCGCTCGCGACTTCATCGACGAGCTGTCGACGGAGGTGGAGGAGT TGGAGAACCTCGTTGAGGAGACCGCTCGCTCTCTCGGGAGAGAAGCTGCT CAAAACCAGGTGCGATTCGTAGCGACATGTGTGTGAAAAAAAGGAACGAG GCGCTCAACGTCGAAGTCAAAGCTAATTTTTTCCCTCAATACAAGTAATT CCCGACCTAATGTTCGTGAAATCATTTTTTCCCGCCGACGGTCGTTTTCG TGTACCGATTAGACTGGCTCGCACGGCCGCGGCAGTCATGGACAGGCCCT CTGGCAGTTTCCTCCCGAATGTCCTCAAATTGACCCTTCGCCCGATACTC CCATTTACAGCCAAGATCACATTGTCAATAATAGGCGGAACACACACGAA ATCAATCCCTGATGGTGTCATATTTTTCGAGGGGATATTTCCGTAACACC CCCCCCCCCCCTCCCGGCCGCCGCCCCCTCCCTTTCAACAACCATCAAGA CTCATAACAGGGGATTCAGTAGAATAAGGCGACTTTGAACTTAAACTCAG ATACGTCGAGTGCGCTTGACTTGACATCAAGGTTTTGTCCGATAAGAAGA CTGGGATTTGTCTCCCCGAGGTCCTTGAAAGAAGGTTTTCGGTGATCGAG CGTCGGTTGTTTTGATGCGTTTCACCTACGGTGATGCGAAGTTCGGCCGT ATCGTGTGCTGGCACCGTCGTTTCGCCCTTTTCTCGACACGTGCGTTGGA CTAAGCCCCACCTGTTTTCGACGAGACCTGTTCCGAGCCCGCGCCCGAGA AAATATCGCCCTTGCCTCCCTTGCCTCTCTTGCCTCACCCTTCCAGCACG CGAAGCTCGGCAAGCGCTTGGGCAAGCGTGTGACGGACGTGCTTCTGCAC CTGGACAGGGTGACCGGCGATGATCAAGTTCGCACCGCGAGGAGGAAGCA GGTGCCTTTAGATGTCATTTGCCGGGATTTTTTAGCTTGCAATCGGCCTT GGCTGCTGTGTCGGGGAAGCGCAAGCTTTTGCCGTGTGTTGTAAAGGGGG GAATAGTGCGAAGGGAATGTGCGACTTGATACACTTTGGATGGGCGACTT GATGCACTTTACAGCAATCTCGAGAGAGCACAAAATGGAGAACTTTGAAG AAAGAAAAATGAGCTGTCATGCTACTATTATTAGTATGTATATAGACCGA CGTATATGAAGAGATATTTAGGACCAAGATAAGCTCTCCAGAATACATCT ACATCCGATGTTTTGTCGCCCGGAGTGTTTCTGGACGAGTAGCTCGCGGT GGTGGGGTGCGAGCAGTCGAGGTAGGTGCGGCATTTCGGGTTCGAGTGTC CTCGTTTCGCTGCTGCATCCTCGCAGAAAGGTACGCATCCCTTGCGTTTG TCCCTGTCCTATGCTGTCCAGGTTGATAAAGCCCTGGCGTTGGGCGAACG AGTTGGAAACGCGATTGGGGAGAACGTGGCATAGCTGTGACAACGGTAGA CGACAGTCAGGTGCTCGGGATACGAGAAACCAACTTGGTGAACGCCGTCG AAGGCGAAAAATTACGAACTCTCTTTACGGTGTAGAGCTGAGTTTTTTTA AGATTTCAAAGGAAACCTTCTGCGTAGCGTTGGGTGCCCATAGAGGACAC TGGTTTGAAAGATATGACTTTTCCGACAGCCACCGGTCCCTGCGGTCTTT CTTCTGTCACATGCGTAATGGTTACCGCCTGAAAGATGTGAACGGGGCAT TGATCTTGAGCCACGACTGCATTGAAGACAAAGAGTGTCCCTTGGTACTC TTACACATGAGTTGGATTTTTTATCACGCCCTGACTTTGAGGTTCTTTAG CTGTCAACCTCGGCGAGACTCCACGAATGCACGCTCTCTGTAGAAGACGA CTCCGCAGGGCTCTTCCGCATCATCGTTTTGGGTAACACCGTTAACTCTA TAATAGTTCTCTCCTAAGGATGCGAACACACCTAAGTTTCTTCGTGTTCG GTCCATTTCCCCCCTCATCCGTTGACTTACCGTATTTATTTGTTGCCTGT TCGTTCTTACCGTTGGTCTGTCTTGCTACCATACGCGTTGAACAATGTTA ACCTACGGTATCACTCCTTCTCCACCCGTAATGGAAAGCTCTAAAATTCG TGTCGAACTCCACATACATTTGTTAATCGCAGTGTTTGGCCCCTGGGTAC AGGTCAGATGCCTCTGATAATTGACTTCATTTTGCGGTTTGGTACGTTTG TTTGTATCTTTGGCTTCAATACTTAATACCAGTATCTTTTATTGTACCTT GAACTCTAACTTGGTACTCGATATCTTTTTATATTTTATACCCTTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1071:234584..241481+

>mRNA_F-serratus_M_contig1071.698.1 ID=mRNA_F-serratus_M_contig1071.698.1|Name=mRNA_F-serratus_M_contig1071.698.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig1071:234584..241481+ (Fucus serratus male)
ATGCCTTCCAAAATCTACCTTGTAGGATCGGATCAGACGACGAAGTCCTC
AAATCATGCGCGAAGGTTATCCCTTCGAACCGGGACCCGCCTGGCGATCG
CAGCGGCGGGGGCAACGCTTGTCTTCATGATTGGGTCCACAGGTGGTTGG
GAGTACGCAAAAAGAATGTTTCGAGTTATGTGGGATGGTGATCAGGAGGG
ACGTGCGAAGTCGAGACAGCTTGAGATGCCTTCCAAAATCTACCTTGTAG
GATCGGATCAGACGACGAAGTCCTCAAATCATGCGCGAAGGTTATCCCTT
CGAACCGGGACCCGCCTGGCGATCGCAGCGGCGGGGGCAACGCTTGTCTT
CATGATTGGGTCCACAGGTGGTTGGGAGTACGCAAAAAGAATGTTTCGAG
TTATGTGGGATGGTGATCAGGAGGGACGTGCGAAGTCGAGACAGCTTGAG
AACGTTGTCAGCGCTCGCGACTTCATCGACGAGCTGTCGACGGAGGTGGA
GGAGTTGGAGAACCTCGTTGAGGAGACCGCTCGCTCTCTCGGGAGAGAAG
CTGCTCAAAACCAGAACGTTGTCAGCGCTCGCGACTTCATCGACGAGCTG
TCGACGGAGGTGGAGGAGTTGGAGAACCTCGTTGAGGAGACCGCTCGCTC
TCTCGGGAGAGAAGCTGCTCAAAACCAGCACGCGAAGCTCGGCAAGCGCT
TGGGCAAGCGTGTGACGGACGTGCTTCTGCACCTGGACAGGGTGACCGGC
GATGATCAAGTTCGCACCGCGAGGAGGAAGCAGCACGCGAAGCTCGGCAA
GCGCTTGGGCAAGCGTGTGACGGACGTGCTTCTGCACCTGGACAGGGTGA
CCGGCGATGATCAAGTTCGCACCGCGAGGAGGAAGCAGGTTGATAAAGCC
CTGGCGTTGGGCGAACGAGTTGGAAACGCGATTGGGGAGAACGTGGCATA
GGTTGATAAAGCCCTGGCGTTGGGCGAACGAGTTGGAAACGCGATTGGGG
AGAACGTGGCATAG
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