mRNA_F-serratus_M_contig107.683.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig107.683.1
Unique NamemRNA_F-serratus_M_contig107.683.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig107.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig107contigF-serratus_M_contig107:677074..678783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002790.1
Exons2
Model size806
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig107.683.1prot_F-serratus_M_contig107.683.1Fucus serratus malepolypeptideF-serratus_M_contig107 677074..678307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.7371445-CDS-F-serratus_M_contig107:677073..6771561622928914.7371445-CDS-F-serratus_M_contig107:677073..677156Fucus serratus maleCDSF-serratus_M_contig107 677074..677156 -
1690962627.2883143-CDS-F-serratus_M_contig107:677073..6771561690962627.2883143-CDS-F-serratus_M_contig107:677073..677156Fucus serratus maleCDSF-serratus_M_contig107 677074..677156 -
1622928914.752479-CDS-F-serratus_M_contig107:678060..6783071622928914.752479-CDS-F-serratus_M_contig107:678060..678307Fucus serratus maleCDSF-serratus_M_contig107 678061..678307 -
1690962627.2982953-CDS-F-serratus_M_contig107:678060..6783071690962627.2982953-CDS-F-serratus_M_contig107:678060..678307Fucus serratus maleCDSF-serratus_M_contig107 678061..678307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.7711346-UTR-F-serratus_M_contig107:678307..6787831622928914.7711346-UTR-F-serratus_M_contig107:678307..678783Fucus serratus maleUTRF-serratus_M_contig107 678308..678783 -
1690962627.3094096-UTR-F-serratus_M_contig107:678307..6787831690962627.3094096-UTR-F-serratus_M_contig107:678307..678783Fucus serratus maleUTRF-serratus_M_contig107 678308..678783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig107.683.1

>prot_F-serratus_M_contig107.683.1 ID=prot_F-serratus_M_contig107.683.1|Name=mRNA_F-serratus_M_contig107.683.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MVRCRLIRCGGNLALFVLSSLVIDWRGWDSSVQQGHSFYHCGWLRSVGAV
AGADPWELLGDGMFDPRRDYWSNSTSLLGSTNVRSPLSTTTHGRRELATS
ESDCGAASSS
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mRNA from alignment at F-serratus_M_contig107:677074..678783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig107.683.1 ID=mRNA_F-serratus_M_contig107.683.1|Name=mRNA_F-serratus_M_contig107.683.1|organism=Fucus serratus male|type=mRNA|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig107:677074..678783- (Fucus serratus male)
ATCATACTGTAGGGTGAATAGTTTTGACACTGCACCAAGACGGGGGGGAG
GGTTTCCCTGAAAACTCAGAAAATTTGTATTGTTACTCTTCTTCCGAATG
CTCACGGCTCTCTCTTCAGCCACAGTATCAATAGGGCTCGCAGCGTACTA
GTTTCAAATAGTCGTCGTGTTTGTTCGACTTATTATGACTTTTCACGGTA
TGCAGGCGGGATTTCATATCTAAAAACAAAAAGGATCTCACTTCTCTATC
ATAGGCCGAACATATTTCTATTAACTCGAGAGCAAGTGACATCATTCGAT
GCTGGTAACCGTCGCGATGCGATGCTATGCATAGGCTCGTCTACAAGTGC
GCCTTCGGCGAGAAGACTGATTTGCTTCATAAATAGGTTCCATGAAATAT
GATACTTGTAACACTTACCTGGTGTATTTATTAAACAGATACTGTAGCAG
GAGAAAGTGACCGTCAATTGAAGGCGATGGTACGCTGTAGGTTAATTCGT
TGCGGTGGCAATCTCGCTCTATTTGTCTTATCGAGCTTGGTTATTGATTG
GAGGGGATGGGATTCATCAGTACAGCAGGGCCACAGCTTCTATCACTGTG
GTTGGCTGAGGTCGGTCGGAGCCGTTGCGGGAGCTGATCCATGGGAATTA
TTGGGCGATGGAATGTTCGACCCTCGTCGGGACTACTGGAGTAATTCCAC
CTCGCTTTTGGGCTCCACTAATGGTGAGTTTGCGTTGTGATTGAACCGTC
CATGTTATAACACCGTGACGCAAACATAACGTGAAATTGTAAAATTCCAA
ATGTCGAAAGTATGCATGCCTGTCTTGCTCTGGGAGCTGTGTTGGTAATC
GTAACGACTTTATGCTTTTGCCGCCGCATCCGACCACGGACGCAGCTCCA
CGAGTACCTCGAAACCAATTTGTTATAAACGTTCGTACCAGTAAGATGAC
ACCTGAGTACGAGCCACACGTCTGGTGCTCTCTTTGGCGTAAGGGCTTTG
GGGCGCGTTTCAATCGGAGTTCGACGCAGTTTTTGAAGCTCTAAACCTCG
CTTTGAGGGGGCGACTTATGAATTTCTAGTCGGTACAAAGATCGATCGGG
CGACGAGCAAACCGTTTTTGCGTTTGTAATACACCGTCGGATTCTTTATT
TATTTATACGAGAGACTAACCTGAGTTATTACTTGATAGTTTTTCGAAGT
TAAGGTGGTCGCGGATTGTAACCATTGGCTCACTCCTCGCGTGCATAATC
GCGAGACACACATGTTGTAAGATGTATAACCATAGATCCAGTCAGGGGTT
AAAAGTTGAAAGGATCCCCCCCCACTGGCATATATGTATGTATGTATGTA
TGTATGTATGTACGGTCATCACATATAGCTGAGTATGTATCAACCGGGTA
AGGTTGCCAATCCTGCTCGCGGTCAGCTGAATAGGGAAAATAATATTCCG
CTGTCCCCGTGCGTGCCTGAGAATCTGGTCTCGCGTGAACCCTCGCAGCA
ACATTCCGTAAAACTGGACACCTATTTTATCAAAGGTAGGGGGTGTCTAT
CGATTGACTACCACAAATACTGCAGCAGCGGCGCGTTTTCCCTCCTGCAA
ATACGCTATCCTTGCTACTGCATGTAGTGCGGTCGCCACTATCCACAACA
ACGCATGGCCGAAGGGAGCTGGCAACATCCGAGTCGGACTGCGGCGCAGC
GTCGTCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig107:677074..678783-

>mRNA_F-serratus_M_contig107.683.1 ID=mRNA_F-serratus_M_contig107.683.1|Name=mRNA_F-serratus_M_contig107.683.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig107:677074..678783- (Fucus serratus male)
ATGGTACGCTGTAGGTTAATTCGTTGCGGTGGCAATCTCGCTCTATTTGT
CTTATCGAGCTTGGTTATTGATTGGAGGGGATGGGATTCATCAGTACAGC
AGGGCCACAGCTTCTATCACTGTGGTTGGCTGAGGTCGGTCGGAGCCGTT
GCGGGAGCTGATCCATGGGAATTATTGGGCGATGGAATGTTCGACCCTCG
TCGGGACTACTGGAGTAATTCCACCTCGCTTTTGGGCTCCACTAATGATG
GTACGCTGTAGGTTAATTCGTTGCGGTGGCAATCTCGCTCTATTTGTCTT
ATCGAGCTTGGTTATTGATTGGAGGGGATGGGATTCATCAGTACAGCAGG
GCCACAGCTTCTATCACTGTGGTTGGCTGAGGTCGGTCGGAGCCGTTGCG
GGAGCTGATCCATGGGAATTATTGGGCGATGGAATGTTCGACCCTCGTCG
GGACTACTGGAGTAATTCCACCTCGCTTTTGGGCTCCACTAATGTGCGGT
CGCCACTATCCACAACAACGCATGGCCGAAGGGAGCTGGCAACATCCGAG
TCGGACTGCGGCGCAGCGTCGTCGTCGTGCGGTCGCCACTATCCACAACA
ACGCATGGCCGAAGGGAGCTGGCAACATCCGAGTCGGACTGCGGCGCAGC
GTCGTCGTCG
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