mRNA_F-serratus_M_contig107.682.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig107.682.1
Unique NamemRNA_F-serratus_M_contig107.682.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig107.682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig107contigF-serratus_M_contig107:558323..565282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size301
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.341105-CDS-F-serratus_M_contig107:558322..5584761622928911.341105-CDS-F-serratus_M_contig107:558322..558476Fucus serratus maleCDSF-serratus_M_contig107 558323..558476 -
1690962625.470827-CDS-F-serratus_M_contig107:558322..5584761690962625.470827-CDS-F-serratus_M_contig107:558322..558476Fucus serratus maleCDSF-serratus_M_contig107 558323..558476 -
1622928911.362929-CDS-F-serratus_M_contig107:565136..5652821622928911.362929-CDS-F-serratus_M_contig107:565136..565282Fucus serratus maleCDSF-serratus_M_contig107 565137..565282 -
1690962625.479959-CDS-F-serratus_M_contig107:565136..5652821690962625.479959-CDS-F-serratus_M_contig107:565136..565282Fucus serratus maleCDSF-serratus_M_contig107 565137..565282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig107.682.1prot_F-serratus_M_contig107.682.1Fucus serratus malepolypeptideF-serratus_M_contig107 558323..565282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig107.682.1

>prot_F-serratus_M_contig107.682.1 ID=prot_F-serratus_M_contig107.682.1|Name=mRNA_F-serratus_M_contig107.682.1|organism=Fucus serratus male|type=polypeptide|length=100bp
PCLACPAARTLRAGGEARNALLLRRRFRSAPCRSSFCFRPDGTHGIKCRF
SYVNTEDSYVYTKVRPLMPNLPLSSLLLSAYSVFPVPLAPFLLPFSGSL*
back to top

mRNA from alignment at F-serratus_M_contig107:558323..565282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig107.682.1 ID=mRNA_F-serratus_M_contig107.682.1|Name=mRNA_F-serratus_M_contig107.682.1|organism=Fucus serratus male|type=mRNA|length=6960bp|location=Sequence derived from alignment at F-serratus_M_contig107:558323..565282- (Fucus serratus male)
CCTTGTCTTGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGC
ACGCAATGCTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCA
GCTCCTTCTGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGGTAT
AACTGCGCGCGGATTTCGCAACCCCCCGCCGCCCCGAATCACTCGGCATT
ACGACCCCCTGCGACCTAGATTTTCGCGCCCCGGCGTTTGCGCCCCCTCC
AACCTTGGCAAGACTTAGGTTTTCCACATCTGATGTACATCTCTTACGAT
GTTTAATACATAGTACAAGTCACGCTGCAAGTACAAGAGCGTCGACCTAC
CGCCCCCGCGCAGATTTTGTCGCGAAAATACAACACGCGCGGTGTTCTGA
ACGTGCAATCAGCAATTCCCTCCTACCCTGACAGGACTACTAGTATACAG
CTGTTAACACATTCAATGCGTCACGCATTGTCTAATTCTATTTGCACGTC
GCCAACCCCAATATTAACGTGACCATGGCCTCACCCCCTTGAGTCTCTTG
ATGGCCCATTAGCGAAAAAAAAAAAAAAAAAAAAAAATGGTACGGAATTG
TCTTGCACAGCAAAACTAAATGCTGGTGACAACTTTTCCCCCGGGTGATG
TAGCGACTCGGGATAGAACGACTCGCTTGCCGCGGTGTGGGCAGCCTGCA
AACTTACGGCCCTAATTCTCGCACACAATAAGGCGGCGCTCGAACTCTCA
TGCTCTCCGCCGCAGTTTAGACCCTTATGACTCGCTTGCAGCGACGTGGA
CCGAGCTTTAAAAATTATAGCATTGTACATCACCTACTACTAGATGACGG
TGATTTTGCTTACGTACCGCAGGTCCAGAGCTCTCATGCCCCCCTCGGAC
TTAAACCACTCCGGTTACTTTAATCGTCTCGCTGTAGCGCAAACAGTTAG
CGACTAGGGATAAACCCTACACTCGCTTACCGCGATGTGAACCGCATCTG
AAAAAAAAAAAAAAAAAAAACAGTTCGCCACTAGGGATAAACCCTACAAT
TCGCTTGCCGCGATGTGGACCATATTTGAAAAATTACAGCACTAATCCTC
GCCCAGAGGCGGTACCCGAGCTCCCATACTCCCTTGACTGATAACAGATC
CACTTACTTCCATCGCCCCGCTGTAGCAAAAAAAAAAAAAAAAAAAAAAA
GTTAGCGGCCAGGGATAGACTCTACGTTGCCTACCGAAAGATGAACCATC
TTTCCAAATTTAAAGCGACCCCTTGTCCCCCCCCTGCGACGATGGCCATT
GAATACCCGAGCTCCCATACTCCCTTGACTGTAACAGATCCACTTACTTC
CATCGCCCCGCTGTAGCAAAAAAAAGTTAGCGGCCAGGGATAGACTCTAC
GTTGCCTACCGAAAGATGAACCATCTTTCCAAATTTAAAGCGACCCCTTG
TCCCCCCCCTGCGACGATGGCCATTGAACCAGTTAAATCCGGGCGGCTCA
ACAGTATCCAACGTTGACGCTGACCCTGTTTCCGGGCGACTTAGCTACCA
GAGAGAAGCCGTATACTTCATTAGCTACGATGTGGACTGCATTTTCGGGT
TTGAACCACTTCTGTTCCGCAGGCCTCGGGCCCGATTCCTACTCCGACCA
TAACCGTTCTAGCCGCCTCTGCCGCTGGATCGCAACGTAACACCGCTCGC
CTTGGATGACCCTCACATACAGTGTCCAATGTAGATCATGTACACTCGCG
CAGGAACCCCCCCCTTCCGCGTCGATTATGGGCTCTGGCCCCTCGATGCT
CGCGATTACGCGATAGTCTGCACTGTGACGAATCAAGTACGTGTCCTTGT
GGATGCCCCTCTTCACAGACGACGCTCGTCGCCAGGCGTGCCCTCAATAT
AGCGGTCGCTGTTGCAATTGTGGATCATCCGAACATAGCCCCCGATGATG
TCCTGCCCCCTTCACGCACGCTACAAACGTCGCCATAATCCCGATTTGCC
CCACAGGAGAGGTCCTCCTCCGCACCTTCAAGGTAATAGTTCTGGACTCA
CGCACGCTACAAACGTCGCCGCAATCCCGACTTACCCCCACCGCCGCGGC
CCTCCTCCACATTTTCAAGGTAATAGCTCCGGACCTCCGCATACCCCAAA
CGTCGCCAAAGTCCCGACTCACCCCACTGCATCCTTGAGCGCCCATGGTT
CTGGTTTAGCCTCAACGGCTCCCACCATGCGTTATGACCCAGCACTCTCG
GGTCACACCAACCCGAACGCTCGGCACCCAGGTACGCTCCAGGTGCAACC
TTATACTACCCCATGACGGCCCGAAGACAGTCCCGAGTCCGTACCACTGT
CTACGGCACCACTTCACGGATACTCCCGCCCAGTTAATTCCAACTCATAG
GCAACATGTACTGGACCAACATTGCGACCGTGCCATCTCCACCATGCCCC
CGACCCTGTCGTCTCGGCCAGGACTGACCCCCTGACCGGTACGATAATTC
AGAGGTGTGGGGAGACACGCACACGAGGTACGGACATACGGGTGCTCTGT
CCTCCTCATGCTCGCCCCTCTCACGGACACACTGCCCGGGTATGGGTTCC
TCTGGGTTCAGTGCTGGCTTGGTCAGCCTGCCTGCTATCCATGAACTCCC
TCTCGATGACAGCGACGGTGATGCCGTCTCAGACGATCACTATCCGTACC
CAATACAGATTGGTGTGTGCCCCCAATCTCGACAAATTTCGGACCTTGAG
ACGCCGACAGCGCAGTTGACAGCCGTTGGACACACACGAGATTGTGCCGC
GACTCGACCTGCCGCGGTCATTCCGCACCATTTTCTGGACGCAGAAAATG
CCTTCCTAAACAGGGAAGAAGACCCCGCCCACTCATTATGGGCCAGCAGC
TCAGAGCCCCCAGTACCAAGACATAATACAAATGTTACAGCTGACTTGAG
CGCTTCTTACGGTACTCCCGCGACATTGGGCCAACACGAGATTGCCCAGA
TCGCGATGATTCTGAACGGGCGCGGTCTGTCACAACCCCCCCGTTCCCTT
CTCGCATGACCTCTGCCCCCTTTCATCCCACTTGAACACGCATATGTCAC
CTATGACGCATCACTTACATACATCTGTGATGATGTCGTCCTTTTCTGGT
ATCCCCCTTCGGCCTTCTCCCAATGGACGCAATCGCCGTTCACCGTAGAC
CTCGTCGAATATAATTGCGCGAAACAGTTCATGATGGCCTCAAAAGCACG
CCTACTCGGCGATGATACGGCACTCTCAGCCATCCTTGCTTCAAACGACC
CCCGAGAGCAAAAACGCCTCGGCCGTCGCGTACGTCACTTTGACCATGAG
CTATGGCAATCTCTCTGCGACACCATTGTATTACAGGGGACCCTAGCAAA
ATTCTCCCAAAACAACGAGATACGCTTCGCCCTCCTCCAAACCGGCGACC
ACCGCCTCGCCGAAGCAAGCCCTCACGATAACTTGTGGGGCATCGGCCTG
AGCGCCTGCGACCCGCGCGCCTCTTCCCTGATTCCTGGTGCGGTAGAAAT
CTGCTCGGTCAGGCCTTAGAGAGCGCCCGCGAAATTCTTCGCCAAGATTT
AAATATACCGCCCGACGACCCCGCACCGGAAACCCCGGTTCTACGGGATA
CTACCGGCGATACCGTTTCGAGGTAGACCCAATTACTCACCTCCGCCTCG
ACACGACCCCACTTCCTGCCATTACCCATACGGCTGCGCTCTCGGCTTTC
ACCGACTCGGTGCCCGATGACCATGCCCCCGAGGTACTTTGGCTCAAGAA
CAGCGCGCCGACGCGCCCCTCCTGCCTGAACAAGGCCCTGATCTGATCGG
TGGCATAGTCACCATGGACGACGCCACCTTCACCATCCTATTAACACTCC
ATAGTCGAGTTTCCGTGACTTCTCGATTTGACTGCCGCGCCCTAGAACCT
CTCCACATAGTTGCAATCCAACAAAAATAAAATAAAATAACATCTGTAGG
AACTGCAATAATCATATTAGCTGCGGTAAAATAAGCACGAGTATCAATAT
CTAATCCTACAATAAACATGTGATGAGCCCCCACAATAAATCCAAGAATG
CCAATAGAAAGCATCGCGTATGTAAACACGCGGAAAAAGAGTTTCAGAAA
GCTGGTGTTGGATTAGGTAAGGCTAAATCAGATTTTAAAACGGCTGGTAT
AGACGTAGTTGCGGCTCAAGCAAATAAAGCTAGTGCAGAAACTATTAAGG
CTAGGGTTGAGTTATTGGGTAATAATTCATCTTTTAGACACAGGGTCGCC
TCAATCGTTTACCCACCAAGGAGCATTTGACCAGATGGCCGCAATAGGTG
CCGCTGAAGCGTCCTGCATCCGATTCATAACGCCTAAAACGTGGAGCGGT
TTCGGATCACGCAGCTGCTCAGCACGAACAGCCAGGCCAGAATGACCGTT
CAATTCAACCATGACGGCACGACGTCCGCATCCCTTGCAGTTGGACGCGC
TTCCACTCCCGCCTCGACCAGACGGCCGGATTTTCGGTGAACTCACCCTT
TCCCCTTGCGACGACGACTTCAGCAGCGCTGTTGCCTATATTCGCAACGG
TGAAACCCTAGACGCTGCTTATAATCTTATCTACAACGGCCCAGGCGTGA
TTCTCATCGACTCCCCTCAGATTATCCCGGTGAACTTAGTTGGCCTCGAC
GGCTCCCCTGCCTTAACGGGCCATTACATGGTTGACTTATTCCCCGTCGA
CGCCGACCCGGCCCCTTCGGAACGCTTCGCTTCCTCGGGTCGACAATTGA
TACCCTTGTCGGGATACCAAGATCTAGAACCGAATGACTCGCCCCCGCTC
AACACGCTCGATCCTCCGGACGAGCCCCCCCCCCCCCCGAACTTCTACAC
CGACTCGTTCGTCGGATAGAATTCGCGCTGGATGCGGCTGGCTGGGATCC
CGCTGCCCTCGATGCTCTCTCCATCACACTCGTCCCCTATACGAGCGTCT
TTTTGTCGTCCAAACTGGACTACGGCGAATGCTCTACACGTCATTGCGAA
ATTCAATCGCGTCCCTACAGACTGAACCCCGTTCTCTCCAAACAGGTCGA
TGCCATCTTGGACTCTATTTCGCCGCTGGCCTCATCCAGCATTCCACGTC
ACCATGGTCGAGCCCTCTCGTATGTGTCCCAAAGAAGGCGGGCGGCATCC
GAATAACAGTCAACTATCAAAAACTGAATAAGGTCACCGAGATCCCGCCC
GGCCTATAACTTCCCTCTCTCAGGATAACGCTTCGCCGACTTCCGCTTCC
GCCTGCCCCTCCCTCCTATCGCCGACGATATCTCTGGCGCCTCCACCCTG
GCGGATCCAGACGATCTTGGCGTTTATCTCATCCGAGCGTGCGGTCTCAC
CATCCCTTCCTGTCCCGTCCCTGGCGTGGGCTTGGGTGGGCTGGTCCCCT
CGCCGGATGCCCCAGTTTTGGGTGGGCTAGCACCCCCACCGGATACTCCG
GTTTTGGGTGGGCTACCCCTGACACAGGATGACTCCCGCACCCACCGTGC
CCCGTTACCTTCTCAACCTATAACTGCCCGGCCCTCCCGCCCCAGCGCAC
CTCCCGCCCATACGCCCTCTGCAACCTACGCCATTAACTCCCGCGACGAT
ACCCCCCGCCCATACGGACGCACACGAAGCCAAACCGCGATCTCCGCTGG
ACATACCCCATCACGATCGGATTACCGCAAGACCGCTCACAGCGGATTCG
CCGCGCCCGCCGCTTCAGCACCTCCTCCGTCCCGCTCGTCGCCGCCTCCG
CGTTCGGATCGCCTTGGCTACACAACCACTCCGCATGATCGCGTCCTACA
GACGCCGCCTTCCGCCGACCCCCGGTCGACCTCCCCAACTCCGGCGCCCT
TGCACCCTACACTACCGGATCCTGACATCCACGCTGCGGCGGCCCACCTC
TCCAACACTCTGTTGGACTAAAGCCACCAAGACTGGGAACAAGCACAACG
TGAAGACCCTCGCCGGATGCCCCAGTTTTGGGTGGGCTACTCTTGGCATC
AGATGACTTCCGGACACACCGTGCCCCGATACCGCCTCCTTCTGCGATCC
TTCGCCCTCGTCGCCCTTGCGCGACCCTTCCCCAGGCGTCAAACACAATT
TAATTAACCCCCGCGACGATGCTCCACGGCCCACACGACGGACAGACCGC
TATCTTGGATGGCCCCATCGCGCCCAGACTATCGCACGGCCGCCCACAGT
GGGTTCGCCGCGTCCGCCGCTGCAGCACCTCCTCCGTTCCGCACGTCGCC
GCCTCCGCGATCGGTCCGCCTAGGCTCCACGACCTCCCCGGGCCCTCCTG
TCCGATAATGGACCCCAATTCTGCGCTCTATTAGCGACCACCGTATACAA
ACTACTCGGGATACATAAGCTCACAACGAGCGCCTATCACCCCAGTAGAA
ATAGAGGCGTAGAACGTGTCAACCACACTATGGCTTAAATTTTAGCCATG
GTCTGTAATGAACACCAGAACGACTGGAACGTCCATTTCCCCCATGTCGA
GTACACCTATCACGACTCTGTTAGCGCCGCCACGGGCCTCGCCCCTAAAG
ACGCCCATATTAGACGCCTGCCGCGCCTCGCTCTCACCGTCTTTGATCGA
TCATACGGTGGCATACATCAGAACCTCGATCGTGACCAGTTCGCCCATTG
CGACCTTACCCGCGAGCGTCAACAACGAGCATACGAGCTTGTGCGAGAAC
ACAACTAACCTATCCTTCTTTGCCCTCTCGCCCCCTTCGTTCCCTCGCCT
CCGCAGGTTTTCCTATGTCAACACCGAGGACTCTTATGTCTACACCAAGG
TTCGTCCTCTCATGCCTAACCTTCCCCTGTCCTCTCTCCTCTTGTCAGCG
TACTCAGTTTTTCCCGTACCCCTTGCCCCTTTTCTACTGCCCTTTTCAGG
TTCGCTATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig107:558323..565282-

>mRNA_F-serratus_M_contig107.682.1 ID=mRNA_F-serratus_M_contig107.682.1|Name=mRNA_F-serratus_M_contig107.682.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig107:558323..565282- (Fucus serratus male)
CCTTGTCTTGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGC
ACGCAATGCTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCA
GCTCCTTCTGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGCCTT
GTCTTGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGCACGC
AATGCTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCAGCTC
CTTCTGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGGTTTTCCT
ATGTCAACACCGAGGACTCTTATGTCTACACCAAGGTTCGTCCTCTCATG
CCTAACCTTCCCCTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCC
CGTACCCCTTGCCCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGAGTTT
TCCTATGTCAACACCGAGGACTCTTATGTCTACACCAAGGTTCGTCCTCT
CATGCCTAACCTTCCCCTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTT
TTCCCGTACCCCTTGCCCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGA
back to top