mRNA_F-serratus_M_contig107.673.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig107.673.1
Unique NamemRNA_F-serratus_M_contig107.673.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig107.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig107contigF-serratus_M_contig107:213013..213715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.5279732-UTR-F-serratus_M_contig107:213012..2132201622928911.5279732-UTR-F-serratus_M_contig107:213012..213220Fucus serratus maleUTRF-serratus_M_contig107 213013..213220 +
1690962625.531697-UTR-F-serratus_M_contig107:213012..2132201690962625.531697-UTR-F-serratus_M_contig107:213012..213220Fucus serratus maleUTRF-serratus_M_contig107 213013..213220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.5627594-CDS-F-serratus_M_contig107:213220..2137151622928911.5627594-CDS-F-serratus_M_contig107:213220..213715Fucus serratus maleCDSF-serratus_M_contig107 213221..213715 +
1690962625.5393538-CDS-F-serratus_M_contig107:213220..2137151690962625.5393538-CDS-F-serratus_M_contig107:213220..213715Fucus serratus maleCDSF-serratus_M_contig107 213221..213715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig107.673.1prot_F-serratus_M_contig107.673.1Fucus serratus malepolypeptideF-serratus_M_contig107 213221..213715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig107.673.1

>prot_F-serratus_M_contig107.673.1 ID=prot_F-serratus_M_contig107.673.1|Name=mRNA_F-serratus_M_contig107.673.1|organism=Fucus serratus male|type=polypeptide|length=165bp
MFAGTQFSPEFLLSVVVSSFCKITFSPSSKHGLPLTFASPPKITHGSDGG
SRHCCSVATRFGSTRSFKTVDESDGESRHCCTVLAGETVACESDGELVCG
VLWTRLFASSWIASCSSSVSCIITRPRMNSRINLSILLRPRSRSDRKIAS
LNSSTSSFKKVVYSS
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mRNA from alignment at F-serratus_M_contig107:213013..213715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig107.673.1 ID=mRNA_F-serratus_M_contig107.673.1|Name=mRNA_F-serratus_M_contig107.673.1|organism=Fucus serratus male|type=mRNA|length=703bp|location=Sequence derived from alignment at F-serratus_M_contig107:213013..213715+ (Fucus serratus male)
CAGAGCAAGAAAACACAGGCAACAGGAAAACACGAAAACAAAGTAGGCCA
GGCACGGCCGCTCCCAACTGGAAACGAACAGCCTCTCCTTCTTCCGTCCC
CGATCGAACTGTTTGTTCTCATCGGTGGTCATCGTTCCTTGCCGACGCTG
GTCAGTCGCAACCGCCACGCGAGTGGTAACGCGTACTGCTGTAGTTGCGT
CTTGCGTGATGTTTGCTGGAACCCAGTTTTCCCCCGAATTTTTGCTCTCC
GTCGTTGTGTCCTCGTTTTGTAAAATAACATTTTCCCCCTCATCCAAGCA
TGGGCTCCCACTTACATTTGCCAGTCCCCCCAAAATAACACATGGGTCTG
ACGGCGGGTCGAGACACTGCTGTTCGGTCGCGACGAGATTTGGCTCGACT
CGTTCTTTCAAGACAGTGGACGAGTCTGACGGCGAATCGAGACATTGCTG
TACGGTGCTCGCTGGTGAAACGGTAGCATGCGAATCTGACGGCGAATTAG
TCTGTGGCGTTCTGTGGACTCGCCTCTTCGCGAGCAGTTGGATCGCGTCG
TGTTCGTCGTCGGTGAGCTGCATTATTACTCGACCCCGTATGAACTCTCG
CATAAATCTGTCTATCCTCTTGAGGCCCCGTTCTCGTTCAGATAGAAAGA
TAGCATCTCTCAACTCGTCCACCTCGTCCTTCAAAAAAGTAGTGTATTCC
TCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig107:213013..213715+

>mRNA_F-serratus_M_contig107.673.1 ID=mRNA_F-serratus_M_contig107.673.1|Name=mRNA_F-serratus_M_contig107.673.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig107:213013..213715+ (Fucus serratus male)
ATGTTTGCTGGAACCCAGTTTTCCCCCGAATTTTTGCTCTCCGTCGTTGT
GTCCTCGTTTTGTAAAATAACATTTTCCCCCTCATCCAAGCATGGGCTCC
CACTTACATTTGCCAGTCCCCCCAAAATAACACATGGGTCTGACGGCGGG
TCGAGACACTGCTGTTCGGTCGCGACGAGATTTGGCTCGACTCGTTCTTT
CAAGACAGTGGACGAGTCTGACGGCGAATCGAGACATTGCTGTACGGTGC
TCGCTGGTGAAACGGTAGCATGCGAATCTGACGGCGAATTAGTCTGTGGC
GTTCTGTGGACTCGCCTCTTCGCGAGCAGTTGGATCGCGTCGTGTTCGTC
GTCGGTGAGCTGCATTATTACTCGACCCCGTATGAACTCTCGCATAAATC
TGTCTATCCTCTTGAGGCCCCGTTCTCGTTCAGATAGAAAGATAGCATCT
CTCAACTCGTCCACCTCGTCCTTCAAAAAAGTAGTGTATTCCTCAATGTT
TGCTGGAACCCAGTTTTCCCCCGAATTTTTGCTCTCCGTCGTTGTGTCCT
CGTTTTGTAAAATAACATTTTCCCCCTCATCCAAGCATGGGCTCCCACTT
ACATTTGCCAGTCCCCCCAAAATAACACATGGGTCTGACGGCGGGTCGAG
ACACTGCTGTTCGGTCGCGACGAGATTTGGCTCGACTCGTTCTTTCAAGA
CAGTGGACGAGTCTGACGGCGAATCGAGACATTGCTGTACGGTGCTCGCT
GGTGAAACGGTAGCATGCGAATCTGACGGCGAATTAGTCTGTGGCGTTCT
GTGGACTCGCCTCTTCGCGAGCAGTTGGATCGCGTCGTGTTCGTCGTCGG
TGAGCTGCATTATTACTCGACCCCGTATGAACTCTCGCATAAATCTGTCT
ATCCTCTTGAGGCCCCGTTCTCGTTCAGATAGAAAGATAGCATCTCTCAA
CTCGTCCACCTCGTCCTTCAAAAAAGTAGTGTATTCCTCA
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