mRNA_F-serratus_M_contig107.669.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig107.669.1
Unique NamemRNA_F-serratus_M_contig107.669.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig107.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig107contigF-serratus_M_contig107:107249..107714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.4613147-UTR-F-serratus_M_contig107:107248..1073271622928911.4613147-UTR-F-serratus_M_contig107:107248..107327Fucus serratus maleUTRF-serratus_M_contig107 107249..107327 +
1690962625.5034993-UTR-F-serratus_M_contig107:107248..1073271690962625.5034993-UTR-F-serratus_M_contig107:107248..107327Fucus serratus maleUTRF-serratus_M_contig107 107249..107327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.476689-CDS-F-serratus_M_contig107:107327..1077141622928911.476689-CDS-F-serratus_M_contig107:107327..107714Fucus serratus maleCDSF-serratus_M_contig107 107328..107714 +
1690962625.5169127-CDS-F-serratus_M_contig107:107327..1077141690962625.5169127-CDS-F-serratus_M_contig107:107327..107714Fucus serratus maleCDSF-serratus_M_contig107 107328..107714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig107.669.1prot_F-serratus_M_contig107.669.1Fucus serratus malepolypeptideF-serratus_M_contig107 107328..107714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig107.669.1

>prot_F-serratus_M_contig107.669.1 ID=prot_F-serratus_M_contig107.669.1|Name=mRNA_F-serratus_M_contig107.669.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MDPSGQPHPGSVGHDRGDVQRQIAPSQLPSMQVAYPTHSNSTSPASQLVS
PAAAISIMNPASHLEQQHQYPPIPLLLDIGGVATTGRANSAATMPINNIG
MESMAPAASMPPSVAMFHSAPQPQAQLQQ
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mRNA from alignment at F-serratus_M_contig107:107249..107714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig107.669.1 ID=mRNA_F-serratus_M_contig107.669.1|Name=mRNA_F-serratus_M_contig107.669.1|organism=Fucus serratus male|type=mRNA|length=466bp|location=Sequence derived from alignment at F-serratus_M_contig107:107249..107714+ (Fucus serratus male)
CTTTTTCAATCGAGGGAAACGCATTCGGATAAACACATATTCAAACGGGC
TCTGATCTTTGACTTGGTGCGGCGGGACCATGGATCCCAGCGGCCAGCCT
CACCCAGGCAGCGTTGGTCATGATAGAGGCGATGTACAGAGGCAGATTGC
CCCATCTCAACTGCCTTCGATGCAGGTTGCTTATCCCACCCACTCGAACA
GCACATCGCCGGCGTCTCAACTCGTCTCCCCAGCGGCAGCTATTTCCATC
ATGAATCCGGCTTCACACCTGGAACAACAGCATCAGTACCCGCCCATACC
CCTACTCTTAGACATAGGTGGGGTGGCGACGACTGGCCGCGCCAACTCAG
CTGCTACAATGCCGATCAACAACATCGGAATGGAAAGCATGGCTCCTGCC
GCATCCATGCCCCCTTCAGTAGCCATGTTCCATTCCGCGCCACAGCCCCA
GGCACAGTTGCAACAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig107:107249..107714+

>mRNA_F-serratus_M_contig107.669.1 ID=mRNA_F-serratus_M_contig107.669.1|Name=mRNA_F-serratus_M_contig107.669.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig107:107249..107714+ (Fucus serratus male)
ATGGATCCCAGCGGCCAGCCTCACCCAGGCAGCGTTGGTCATGATAGAGG
CGATGTACAGAGGCAGATTGCCCCATCTCAACTGCCTTCGATGCAGGTTG
CTTATCCCACCCACTCGAACAGCACATCGCCGGCGTCTCAACTCGTCTCC
CCAGCGGCAGCTATTTCCATCATGAATCCGGCTTCACACCTGGAACAACA
GCATCAGTACCCGCCCATACCCCTACTCTTAGACATAGGTGGGGTGGCGA
CGACTGGCCGCGCCAACTCAGCTGCTACAATGCCGATCAACAACATCGGA
ATGGAAAGCATGGCTCCTGCCGCATCCATGCCCCCTTCAGTAGCCATGTT
CCATTCCGCGCCACAGCCCCAGGCACAGTTGCAACAGATGGATCCCAGCG
GCCAGCCTCACCCAGGCAGCGTTGGTCATGATAGAGGCGATGTACAGAGG
CAGATTGCCCCATCTCAACTGCCTTCGATGCAGGTTGCTTATCCCACCCA
CTCGAACAGCACATCGCCGGCGTCTCAACTCGTCTCCCCAGCGGCAGCTA
TTTCCATCATGAATCCGGCTTCACACCTGGAACAACAGCATCAGTACCCG
CCCATACCCCTACTCTTAGACATAGGTGGGGTGGCGACGACTGGCCGCGC
CAACTCAGCTGCTACAATGCCGATCAACAACATCGGAATGGAAAGCATGG
CTCCTGCCGCATCCATGCCCCCTTCAGTAGCCATGTTCCATTCCGCGCCA
CAGCCCCAGGCACAGTTGCAACAG
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