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Homology
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KGK6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK6_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 6.170e-13 Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 415 LEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
+E DV Y++GFRY C +CA N +++ E+ T+FNAWDA L R+ +++SKEFPF+LTK+
Sbjct: 1 MEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKR 61
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JCU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU4_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.680e-12 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 415 LEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEF-PFVLTKK 597
+EEDV Y+IGFRY C+RC N T ++ E+ T+FNAWD L R+ D+VSKEF PF+LT +
Sbjct: 1 MEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKEFFPFILTHR 62
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5L553_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L553_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 5.350e-12 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 415 LEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEF-PFVLTKK 597
+EEDV Y+IGFRY C+RC N T ++ E+ T+FNAWD L R+ D+VSKEF PF+LT +
Sbjct: 1 MEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKEFFPFILTHR 62
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: D7FVB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB4_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.210e-11 Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query: 615 LVNRLADDLLEGKGFLATSKSLQKAYSATYFKLHRSYVSLVNHRVSQLKGLLGQDVDVGQIP-KFGHIGDPLGFNSSHPSAHYLRDIWHKWFYEIPVLQV 911
+V+RLADDL+ GKGF A +K++ +A++ + Y SLVN R + G+ + ++ + P +FG D + + PS HYLRD+W +F ++PVL+V
Sbjct: 1 MVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVNSRRTS-SGIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEV 98
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JXD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD8_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 6.430e-11 Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 415 LEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
+EEDV Y+IGFRY C+RC N T ++ E+ +F+AWD L R+ D+VS+EF F LT +
Sbjct: 1 MEEDVGYIIGFRYKCERCVEYNGTVEESEQRPPSFDAWDVGCLGRLPDYVSEEFSFTLTHR 61
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 164.1 |
Seed ortholog evalue | 3.4e-38 |
Seed eggNOG ortholog | 2880.D7FIV2 |
Preferred name | WRN |
KEGG ko | ko:K10900,ko:K20777 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113 |
EggNOG free text desc. | 3'-5' exonuclease activity |
EggNOG OGs | KOG4373@1,KOG4373@2759 |
EC | 3.1.11.1,3.6.4.12 |
COG Functional cat. | C |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01000,ko03032,ko03400 |
Exons | 3 |
Model size | 911 |
Cds size | 297 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928908.5064719-UTR-F-serratus_M_contig1065:16139..16404 | 1622928908.5064719-UTR-F-serratus_M_contig1065:16139..16404 | Fucus serratus male | UTR | F-serratus_M_contig1065 16140..16404 + |
1690962624.0614858-UTR-F-serratus_M_contig1065:16139..16404 | 1690962624.0614858-UTR-F-serratus_M_contig1065:16139..16404 | Fucus serratus male | UTR | F-serratus_M_contig1065 16140..16404 + |
1622928908.5157204-UTR-F-serratus_M_contig1065:16597..16656 | 1622928908.5157204-UTR-F-serratus_M_contig1065:16597..16656 | Fucus serratus male | UTR | F-serratus_M_contig1065 16598..16656 + |
1690962624.0784585-UTR-F-serratus_M_contig1065:16597..16656 | 1690962624.0784585-UTR-F-serratus_M_contig1065:16597..16656 | Fucus serratus male | UTR | F-serratus_M_contig1065 16598..16656 + |
1622928908.6266737-UTR-F-serratus_M_contig1065:17159..17449 | 1622928908.6266737-UTR-F-serratus_M_contig1065:17159..17449 | Fucus serratus male | UTR | F-serratus_M_contig1065 17160..17449 + |
1690962624.1035912-UTR-F-serratus_M_contig1065:17159..17449 | 1690962624.1035912-UTR-F-serratus_M_contig1065:17159..17449 | Fucus serratus male | UTR | F-serratus_M_contig1065 17160..17449 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928908.5983508-CDS-F-serratus_M_contig1065:16656..16781 | 1622928908.5983508-CDS-F-serratus_M_contig1065:16656..16781 | Fucus serratus male | CDS | F-serratus_M_contig1065 16657..16781 + |
1690962624.0858831-CDS-F-serratus_M_contig1065:16656..16781 | 1690962624.0858831-CDS-F-serratus_M_contig1065:16656..16781 | Fucus serratus male | CDS | F-serratus_M_contig1065 16657..16781 + |
1622928908.6148214-CDS-F-serratus_M_contig1065:16987..17159 | 1622928908.6148214-CDS-F-serratus_M_contig1065:16987..17159 | Fucus serratus male | CDS | F-serratus_M_contig1065 16988..17159 + |
1690962624.0941002-CDS-F-serratus_M_contig1065:16987..17159 | 1690962624.0941002-CDS-F-serratus_M_contig1065:16987..17159 | Fucus serratus male | CDS | F-serratus_M_contig1065 16988..17159 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1065.648.1 >prot_F-serratus_M_contig1065.648.1 ID=prot_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MWDDIEYIPCPHCGERGQPDGWNTDPRRVYLEEDVCYMIGFRYYCKRCAA ANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKKLLYVGPW* back to topmRNA from alignment at F-serratus_M_contig1065:16140..17449+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1065.648.1 ID=mRNA_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=mRNA|length=1310bp|location=Sequence derived from alignment at F-serratus_M_contig1065:16140..17449+ (Fucus serratus male) CGTGAAGGTGGTTCGAGCAGCGGCAGTGGATCCGCGAGGCCGAACGGTGC
ACCACAATCAAACACGAGTTCGTCTGGGAGTGGCAGCGGGAGCGGCAGTG
GTAGCAGCAGCAAGGTGTCACCACAGCGCCAATTCATCGACGAGATCAAG
AGCAACATTAAAAGAAGTAGGAAGCACGAGAATGGGCGAGTCAGGCGGAT
ATCTGAGTTCCCTTACAATGACGGGTGGGCGCACGTTCCTCTGCCGTCGC
TACAAAAGGCCGGCGGTAAGTATAGGAGTAAGACTAGGCGTAAAAATATA
GGAGTAAGACTAGGCGTAAAAACAAAAGGCAGTATTGTTGTAGAACTTGA
ACTGAACTTGTTCCGCGGTGCATTTCAGTCCTTCGTTGGTCAGCAGCACG
CAGGTTCTGTGGTTTCCGCAGAAGTAGAGCTTAGAACCTTCTCCTCATTC
TGTCACAGGTCTACCATCAGCGGAGCCCTTTTACTTGAAAAGGGTTTTTG
TGTGGGTGCCTGAGTACATGTGGGACGACATCGAATACATTCCCTGTCCG
CATTGTGGCGAGCGTGGACAGCCGGATGGATGGAACACTGATCCGCGCCG
AGTGTATTTAGAAGAAGACGTTTGCTACATGATCGGGTTCAGGTGCGCCT
CCCGACACTACTGTTGATACCGTGAGCATACTCATATTTTATATTTATGT
TTTACTGTGTGTCGACTATCGCTGCCGAATACCGCGGTTGTCTAACCTCT
AGTCAAGGTACGATTTGTTTTTTCTAGCCGCACTCTGTGTAGGTTAACGA
ATTGTTTACAATACAGTATCGGTCCTTTGCTTCGTGCTTTGATACCAGGT
ACTACTGCAAGCGATGCGCCGCCGCCAACCCGACAAGGAAGAAAGAGGAG
CGTACAAGTACGACCTTCAACGCCTGGGATGCGGACGTTTTGGCCAGGAT
GGACGACTTCGTGTCTAAGGAATTTCCGTTCGTCCTGACAAAAAAGCTGC
TATATGTAGGACCCTGGTGAACCGTCTGGCAGATGACCTCCTCGAAGGGA
AGGGCTTCCTGGCGACTTCGAAGTCCCTTCAGAAGGCGTACTCTGCCACG
TACTTCAAACTCCATCGTTCGTACGTATCGCTAGTCAACCACCGCGTGTC
TCAACTGAAGGGTTTGTTGGGGCAGGATGTTGACGTCGGCCAGATCCCAA
AGTTTGGGCACATCGGAGACCCTTTGGGGTTTAACAGCAGCCATCCTTCG
GCCCACTATCTGCGAGACATCTGGCACAAGTGGTTCTACGAGATTCCTGT
TTTACAGGTA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1065:16140..17449+ >mRNA_F-serratus_M_contig1065.648.1 ID=mRNA_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1065:16140..17449+ (Fucus serratus male) ATGTGGGACGACATCGAATACATTCCCTGTCCGCATTGTGGCGAGCGTGG ACAGCCGGATGGATGGAACACTGATCCGCGCCGAGTGTATTTAGAAGAAG ACGTTTGCTACATGATCGGGTTCAGATGTGGGACGACATCGAATACATTC CCTGTCCGCATTGTGGCGAGCGTGGACAGCCGGATGGATGGAACACTGAT CCGCGCCGAGTGTATTTAGAAGAAGACGTTTGCTACATGATCGGGTTCAG GTACTACTGCAAGCGATGCGCCGCCGCCAACCCGACAAGGAAGAAAGAGG AGCGTACAAGTACGACCTTCAACGCCTGGGATGCGGACGTTTTGGCCAGG ATGGACGACTTCGTGTCTAAGGAATTTCCGTTCGTCCTGACAAAAAAGCT GCTATATGTAGGACCCTGGTGAGTACTACTGCAAGCGATGCGCCGCCGCC AACCCGACAAGGAAGAAAGAGGAGCGTACAAGTACGACCTTCAACGCCTG GGATGCGGACGTTTTGGCCAGGATGGACGACTTCGTGTCTAAGGAATTTC CGTTCGTCCTGACAAAAAAGCTGCTATATGTAGGACCCTGGTGA back to top
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