mRNA_F-serratus_M_contig1065.648.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KDW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDW3_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.220e-28 Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 346 IPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597 IPC CG+RG PDGWN PRRV++EEDV Y+IGFRY C+RC N T ++ E+ T+FNAWD L R+ D+VSKEFPF+LT + Sbjct: 10 IPCSRCGKRGSPDGWNPKGPRRVFMEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKEFPFILTHR 94
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5L8D0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D0_9PHAE) HSP 1 Score: 124 bits (312), Expect = 3.280e-28 Identity = 67/170 (39.41%), Postives = 90/170 (52.94%), Query Frame = 1 Query: 112 KVSP-QRQFIDEIKSNIKRSRKHENGRVRR----ISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEY--IPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597 ++SP R +K NI + H +G V + PY+ ++Q GLP PF LK +F W+PEY++ ++ IPCP CG+RG PDGWN PRRV++EEDV Y+IGFR FNAWD L R+ D+VSKEFPF+LT + Sbjct: 420 RLSPAMRDHFRTVKKNIDANIIHHSGGVAAPRGGSGKVPYSSPLIFPKCATMQNTSGLPKLSPFLLKPLFAWIPEYLFPELALARIPCPRCGKRGSPDGWNPKGPRRVFMEEDVGYIIGFR----------------------FNAWDVGCLDRLPDYVSKEFPFILTHR 567
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KU53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU53_9PHAE) HSP 1 Score: 114 bits (285), Expect = 2.340e-26 Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1 Query: 346 IPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597 I CP CG+RG PDGWN PRRV++EEDV Y+IGFRY C+RC N T ++ E+ T+FNAWD L R+ D+ SKEFPF+LT + Sbjct: 56 IACPRCGKRGSPDGWNPKGPRRVFMEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYASKEFPFILTHR 140
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.450e-23 Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 1 Query: 109 SKVSPQRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597 S S Q +F E+K I RS E G V+ FP+++ + Q P P CG +G PDGWN PRRV+ E DV Y++ FRY C +CA N +++ E+ T+FNAWDA L R+ +++SKEFPF+LTK+ Sbjct: 37 STSSAQERFFQEVKDKIDRSITLEEGGVK--GRFPFDNPLVRPKCATFQ-------------------------------PSPGCGGKGAPDGWNPKGPRRVFTEHDVAYVMEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKR 167
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5J6R9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R9_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.010e-19 Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1 Query: 355 PHCGE-RGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597 P C + DGWN PRRV++EEDV Y+IGFRY C+RC N ++ E++ T+FNAWD L R+ D+VSKEFPF+LT + Sbjct: 42 PKCATMQNTSDGWNPKGPRRVFMEEDVGYIIGFRYKCERCVEYNGIVEESEQSPTSFNAWDVGCLDRLPDYVSKEFPFILTHR 124
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 4.680e-19 Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 591 KKAAICRT-LVNRLADDLLEGKGFLATSKSLQKAYSATYFKLHRSYVSLVNHRVSQLKGLLGQDVDVG--QIPKFGHIGDPLGFNSSHPSAHYLRDIWHKWFYEIPVLQV 911 +K+ I T +V RLADDLL GKGF ATSK ++AY +Y + SYVSLVN + G + G IP FG GD GFN + PS YLR +WHKWFYE V++V Sbjct: 321 RKSGIATTAVVARLADDLLNGKGFSATSKFKREAYMNSYMMQYHSYVSLVNRCQRSIGGHFRAAAEEGTPDIPIFGGFGDREGFNGAWPSDQYLRAVWHKWFYETVVIEV 430
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 5.440e-18 Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 364 GERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597 G RG PDGWN PRRV+++ DV Y++GFRY C + A N +++ E T NAWDA L R+ +++SKEFPF+LTK+ Sbjct: 2 GARGAPDGWNPKGPRRVFMDHDVAYVMGFRYKCAKGAEFNKGKQEAETRKTRVNAWDAGCLRRLPEYISKEFPFLLTKR 80
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5K3J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J1_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 6.350e-16 Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 355 PHCGE-RGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKE 573 P C + DGWN PRRV++EEDV Y+IGFRY C+RC N T ++ E+ T+FNAWD L R+ D+VSKE Sbjct: 42 PKCATMQNTSDGWNPKGPRRVFMEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKE 116
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.810e-13 Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 3 Query: 615 LVNRLADDLLEGKGFLATSKSLQKAYSATYFKLHRSYVSLVNHRVSQLKGLLGQDVDVGQIP-KFGHIGDPLGFNSSHPSAHYLRDIWHKWFYEIPVLQV 911 LV+RLADDL+ GKGF A +K +++A++ + YVSL + R S L G +P KFG D + + PS HYLRD+W +F E+PVL+V Sbjct: 76 LVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFG----AAPVPVKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEV 171
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JTZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.140e-13 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 415 LEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEF-PFVLTKK 597 +EEDV Y+IGFRY C+RC N T ++ E+ T+FNAWD L R+ D+VSKEF PF+LT + Sbjct: 1 MEEDVGYIIGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKEFFPFILTHR 62 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1065.648.1 >prot_F-serratus_M_contig1065.648.1 ID=prot_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=polypeptide|length=99bp MWDDIEYIPCPHCGERGQPDGWNTDPRRVYLEEDVCYMIGFRYYCKRCAAback to top mRNA from alignment at F-serratus_M_contig1065:16140..17449+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1065.648.1 ID=mRNA_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=mRNA|length=1310bp|location=Sequence derived from alignment at F-serratus_M_contig1065:16140..17449+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1065:16140..17449+ >mRNA_F-serratus_M_contig1065.648.1 ID=mRNA_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1065:16140..17449+ (Fucus serratus male)back to top |