mRNA_F-serratus_M_contig1065.648.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1065.648.1
Unique NamemRNA_F-serratus_M_contig1065.648.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 6.510e-88
Identity = 120/161 (74.53%), Postives = 140/161 (86.96%), Query Frame = 1 
Query:  115 VSPQRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTDPRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            +SPQ + I EIK NIK SRKHENG+V+RISEFPY DGWA  PLPSLQ++ G+PS EPFYLK+VFVWVPEY+W++I+ IPCPHCGERGQPDGWNTD RRV+LE+DVCY+IG+RYYCKRC  AN  +  E+RT+ TF AWD DVLARMDDFVSKEFPFVLT+K
Sbjct:    2 LSPQNRSIYEIKGNIKASRKHENGKVKRISEFPYRDGWASPPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDCIPCPHCGERGQPDGWNTDARRVFLEQDVCYLIGYRYYCKRCTDANAMKNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRK 162
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 5.330e-69
Identity = 108/164 (65.85%), Postives = 128/164 (78.05%), Query Frame = 1 
Query:  115 VSPQRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDG--WNTDPRRVYLEEDVCYMIGFRYYCKRCAAANPT-RKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            V PQ  FI+++K N++  RKHENG V+R   FPYN GWA+ PLPSL    G P  EPFYLK+V VWVPEY+W+D+ +IPCPHCG R QPDG  WNT+PRRV+LE+DVCYMIGFRY CK C  AN   R ++ERT+ TFNAWD  VLARMDDFVS++FPFVLTKK
Sbjct:  124 VPPQSAFIEQMKDNLRACRKHENGAVKRKGAFPYNGGWANPPLPSLYTGLGAPPLEPFYLKKVLVWVPEYIWEDV-HIPCPHCGARAQPDGDGWNTEPRRVFLEDDVCYMIGFRYECKECTRANKEDRSEDERTTQTFNAWDPAVLARMDDFVSEQFPFVLTKK 286
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 7.580e-65
Identity = 97/136 (71.32%), Postives = 112/136 (82.35%), Query Frame = 1 
Query:  190 VRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTDPRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            +R   EFPYN GWAH  LPSL +  GLP   PFYLK+VFVWVPEY+WD+IEYIPCPHC +R QPDGWNT+PRRV+LE+DVCY+IG+RY CK C  AN  R ++ERT+ TFNAWDA VLA MDD+VSKEFPFVLTKK
Sbjct:    1 MRITPEFPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEIEYIPCPHCNKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKK 136
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JE51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE51_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.840e-52
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:  307 VWVPEYMWDDIEYIPCPHCGERGQPDGWNTDPRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            +WVPEYMWD+I+ +PCP CGERGQPDGWNTD RRV+LE+DVCY IG+RYYCKRC  AN  +  E+RT+ TFNAWD DVL RM+DFVSKEFPFVLT+K
Sbjct:    1 MWVPEYMWDEIDCVPCPRCGERGQPDGWNTDARRVFLEQDVCYFIGYRYYCKRCTDANAMKNNEDRTTVTFNAWDPDVLGRMNDFVSKEFPFVLTRK 97
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.460e-43
Identity = 72/164 (43.90%), Postives = 107/164 (65.24%), Query Frame = 1 
Query:  109 SKVSPQRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            S  S Q +F +E+K  I RS  HE G V+    FP+++        + Q +  LP  + FY K V VW+PE+++ +++ +PCP CG +G PDGWN   PRRV++E DV Y++GFRY C +CA  N  +++ E+  T+FNAWDA  L R+ +++SKEFPF+LTK+
Sbjct:  104 STSSAQERFFEEVKDKIDRSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKR 265
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.250e-42
Identity = 68/159 (42.77%), Postives = 105/159 (66.04%), Query Frame = 1 
Query:  124 QRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            Q +F +E+K  I +S  HE G V+    FP+++        + Q +  LP  + FY K V VW+PE+++ +++ +PCP CG +G PDGWN   PRRV+++ DV Y++GFRY C +CA  N  +++ E+  T+FNAWDA  L R+ +++SKEFPF+LTK+
Sbjct:   45 QERFFEEVKDKIDQSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKR 201
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.770e-42
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = 1 
Query:  124 QRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            Q +F +E+K  I RS  HE G V+    FP+++        + Q +  LP  + FY K V VW+PE+++ +++ +PCP CG +G PDGWN   PRRV++E DV Y++GFRY C +CA  N  +++ E+  T+FNAW A  L R+ +++SKEFPF+LTK+
Sbjct:   45 QERFFEEVKDKIDRSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKR 201
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 4.390e-40
Identity = 70/164 (42.68%), Postives = 106/164 (64.63%), Query Frame = 1 
Query:  109 SKVSPQRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            S  S Q +F  ++K  I +S  HE G V+    FP+++        + Q + GLP  + FY K V VW+PE+++ +++ +PCP CG +G PDGWN   PRRV++E DV Y++GFRY C +CA  N  +++ E+  T+FNAWDA  L R+ +++SKEFP +LTK+
Sbjct:   40 STSSAQERFFQDVKVKIDQSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPGLPEVDWFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYIMGFRYKCAKCAKFNQGKEEAEKRKTSFNAWDAGCLQRLPEYISKEFPSLLTKR 201
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5L0E3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.000e-36
Identity = 64/162 (39.51%), Postives = 99/162 (61.11%), Query Frame = 1 
Query:  124 QRQFIDEIKSNIKRSRKHENGRVRRISEFPYNDGWAHVPLPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKKLLY 606
            Q +F +E+K  I RS  HE G V+    FP+++        + Q +  LP  + FY K V VW+PE+++ +++ +PCP CG +G PDGWN   PRRV++E DV Y++GFRY C +CA  N  +++ E+  T+FNAWDA    R+ +++S    FV + +  Y
Sbjct:   45 QERFFEEVKDKIDRSITHEGGGVK--GRFPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCFRRLPEYISXSHVFVASDEFWY 204
[Close]
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Match: A0A6H5KNK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.920e-36
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:  241 LPSLQKAGGLPSAEPFYLKRVFVWVPEYMWDDIEYIPCPHCGERGQPDGWNTD-PRRVYLEEDVCYMIGFRYYCKRCAAANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKK 597
            LP +     LP  + FY K V VW+PE+++ +++ +PCP CG +G PDGWN   PRRV++E DV Y++GFRY C +CA  N  +++ E+  T+FNAWDA  L R+ +++SKEF F+LTK+
Sbjct:    8 LPHIYARPNLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNEGKQEAEKRKTSFNAWDAGCLRRLPEYMSKEFHFLLTKR 127
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1065.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSM2_9PHAE6.510e-8874.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D4_9PHAE5.330e-6965.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV2_ECTSI7.580e-6571.323'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JE51_9PHAE1.840e-5274.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN0_9PHAE2.460e-4343.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE1.250e-4242.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE2.770e-4243.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE4.390e-4042.683'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L0E3_9PHAE1.000e-3639.513'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KNK9_9PHAE1.920e-3647.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1065contigF-serratus_M_contig1065:16140..17449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.4e-38
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons3
Model size911
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1065.648.1prot_F-serratus_M_contig1065.648.1Fucus serratus malepolypeptideF-serratus_M_contig1065 16657..17159 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.5064719-UTR-F-serratus_M_contig1065:16139..164041622928908.5064719-UTR-F-serratus_M_contig1065:16139..16404Fucus serratus maleUTRF-serratus_M_contig1065 16140..16404 +
1690962624.0614858-UTR-F-serratus_M_contig1065:16139..164041690962624.0614858-UTR-F-serratus_M_contig1065:16139..16404Fucus serratus maleUTRF-serratus_M_contig1065 16140..16404 +
1622928908.5157204-UTR-F-serratus_M_contig1065:16597..166561622928908.5157204-UTR-F-serratus_M_contig1065:16597..16656Fucus serratus maleUTRF-serratus_M_contig1065 16598..16656 +
1690962624.0784585-UTR-F-serratus_M_contig1065:16597..166561690962624.0784585-UTR-F-serratus_M_contig1065:16597..16656Fucus serratus maleUTRF-serratus_M_contig1065 16598..16656 +
1622928908.6266737-UTR-F-serratus_M_contig1065:17159..174491622928908.6266737-UTR-F-serratus_M_contig1065:17159..17449Fucus serratus maleUTRF-serratus_M_contig1065 17160..17449 +
1690962624.1035912-UTR-F-serratus_M_contig1065:17159..174491690962624.1035912-UTR-F-serratus_M_contig1065:17159..17449Fucus serratus maleUTRF-serratus_M_contig1065 17160..17449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.5983508-CDS-F-serratus_M_contig1065:16656..167811622928908.5983508-CDS-F-serratus_M_contig1065:16656..16781Fucus serratus maleCDSF-serratus_M_contig1065 16657..16781 +
1690962624.0858831-CDS-F-serratus_M_contig1065:16656..167811690962624.0858831-CDS-F-serratus_M_contig1065:16656..16781Fucus serratus maleCDSF-serratus_M_contig1065 16657..16781 +
1622928908.6148214-CDS-F-serratus_M_contig1065:16987..171591622928908.6148214-CDS-F-serratus_M_contig1065:16987..17159Fucus serratus maleCDSF-serratus_M_contig1065 16988..17159 +
1690962624.0941002-CDS-F-serratus_M_contig1065:16987..171591690962624.0941002-CDS-F-serratus_M_contig1065:16987..17159Fucus serratus maleCDSF-serratus_M_contig1065 16988..17159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1065.648.1

>prot_F-serratus_M_contig1065.648.1 ID=prot_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MWDDIEYIPCPHCGERGQPDGWNTDPRRVYLEEDVCYMIGFRYYCKRCAA
ANPTRKKEERTSTTFNAWDADVLARMDDFVSKEFPFVLTKKLLYVGPW*
back to top

mRNA from alignment at F-serratus_M_contig1065:16140..17449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1065.648.1 ID=mRNA_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=mRNA|length=1310bp|location=Sequence derived from alignment at F-serratus_M_contig1065:16140..17449+ (Fucus serratus male)
CGTGAAGGTGGTTCGAGCAGCGGCAGTGGATCCGCGAGGCCGAACGGTGC
ACCACAATCAAACACGAGTTCGTCTGGGAGTGGCAGCGGGAGCGGCAGTG
GTAGCAGCAGCAAGGTGTCACCACAGCGCCAATTCATCGACGAGATCAAG
AGCAACATTAAAAGAAGTAGGAAGCACGAGAATGGGCGAGTCAGGCGGAT
ATCTGAGTTCCCTTACAATGACGGGTGGGCGCACGTTCCTCTGCCGTCGC
TACAAAAGGCCGGCGGTAAGTATAGGAGTAAGACTAGGCGTAAAAATATA
GGAGTAAGACTAGGCGTAAAAACAAAAGGCAGTATTGTTGTAGAACTTGA
ACTGAACTTGTTCCGCGGTGCATTTCAGTCCTTCGTTGGTCAGCAGCACG
CAGGTTCTGTGGTTTCCGCAGAAGTAGAGCTTAGAACCTTCTCCTCATTC
TGTCACAGGTCTACCATCAGCGGAGCCCTTTTACTTGAAAAGGGTTTTTG
TGTGGGTGCCTGAGTACATGTGGGACGACATCGAATACATTCCCTGTCCG
CATTGTGGCGAGCGTGGACAGCCGGATGGATGGAACACTGATCCGCGCCG
AGTGTATTTAGAAGAAGACGTTTGCTACATGATCGGGTTCAGGTGCGCCT
CCCGACACTACTGTTGATACCGTGAGCATACTCATATTTTATATTTATGT
TTTACTGTGTGTCGACTATCGCTGCCGAATACCGCGGTTGTCTAACCTCT
AGTCAAGGTACGATTTGTTTTTTCTAGCCGCACTCTGTGTAGGTTAACGA
ATTGTTTACAATACAGTATCGGTCCTTTGCTTCGTGCTTTGATACCAGGT
ACTACTGCAAGCGATGCGCCGCCGCCAACCCGACAAGGAAGAAAGAGGAG
CGTACAAGTACGACCTTCAACGCCTGGGATGCGGACGTTTTGGCCAGGAT
GGACGACTTCGTGTCTAAGGAATTTCCGTTCGTCCTGACAAAAAAGCTGC
TATATGTAGGACCCTGGTGAACCGTCTGGCAGATGACCTCCTCGAAGGGA
AGGGCTTCCTGGCGACTTCGAAGTCCCTTCAGAAGGCGTACTCTGCCACG
TACTTCAAACTCCATCGTTCGTACGTATCGCTAGTCAACCACCGCGTGTC
TCAACTGAAGGGTTTGTTGGGGCAGGATGTTGACGTCGGCCAGATCCCAA
AGTTTGGGCACATCGGAGACCCTTTGGGGTTTAACAGCAGCCATCCTTCG
GCCCACTATCTGCGAGACATCTGGCACAAGTGGTTCTACGAGATTCCTGT
TTTACAGGTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1065:16140..17449+

>mRNA_F-serratus_M_contig1065.648.1 ID=mRNA_F-serratus_M_contig1065.648.1|Name=mRNA_F-serratus_M_contig1065.648.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1065:16140..17449+ (Fucus serratus male)
ATGTGGGACGACATCGAATACATTCCCTGTCCGCATTGTGGCGAGCGTGG
ACAGCCGGATGGATGGAACACTGATCCGCGCCGAGTGTATTTAGAAGAAG
ACGTTTGCTACATGATCGGGTTCAGATGTGGGACGACATCGAATACATTC
CCTGTCCGCATTGTGGCGAGCGTGGACAGCCGGATGGATGGAACACTGAT
CCGCGCCGAGTGTATTTAGAAGAAGACGTTTGCTACATGATCGGGTTCAG
GTACTACTGCAAGCGATGCGCCGCCGCCAACCCGACAAGGAAGAAAGAGG
AGCGTACAAGTACGACCTTCAACGCCTGGGATGCGGACGTTTTGGCCAGG
ATGGACGACTTCGTGTCTAAGGAATTTCCGTTCGTCCTGACAAAAAAGCT
GCTATATGTAGGACCCTGGTGAGTACTACTGCAAGCGATGCGCCGCCGCC
AACCCGACAAGGAAGAAAGAGGAGCGTACAAGTACGACCTTCAACGCCTG
GGATGCGGACGTTTTGGCCAGGATGGACGACTTCGTGTCTAAGGAATTTC
CGTTCGTCCTGACAAAAAAGCTGCTATATGTAGGACCCTGGTGA
back to top