mRNA_F-serratus_M_contig1065.646.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1065.646.1
Unique NamemRNA_F-serratus_M_contig1065.646.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1065.646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1065contigF-serratus_M_contig1065:768..2414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size214
Cds size138
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1065.646.1prot_F-serratus_M_contig1065.646.1Fucus serratus malepolypeptideF-serratus_M_contig1065 842..2414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.0441825-UTR-F-serratus_M_contig1065:767..8411622928908.0441825-UTR-F-serratus_M_contig1065:767..841Fucus serratus maleUTRF-serratus_M_contig1065 768..841 +
1690962623.82273-UTR-F-serratus_M_contig1065:767..8411690962623.82273-UTR-F-serratus_M_contig1065:767..841Fucus serratus maleUTRF-serratus_M_contig1065 768..841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.0585442-CDS-F-serratus_M_contig1065:841..8991622928908.0585442-CDS-F-serratus_M_contig1065:841..899Fucus serratus maleCDSF-serratus_M_contig1065 842..899 +
1690962623.830797-CDS-F-serratus_M_contig1065:841..8991690962623.830797-CDS-F-serratus_M_contig1065:841..899Fucus serratus maleCDSF-serratus_M_contig1065 842..899 +
1622928908.0786476-CDS-F-serratus_M_contig1065:2334..24141622928908.0786476-CDS-F-serratus_M_contig1065:2334..2414Fucus serratus maleCDSF-serratus_M_contig1065 2335..2414 +
1690962623.8398385-CDS-F-serratus_M_contig1065:2334..24141690962623.8398385-CDS-F-serratus_M_contig1065:2334..2414Fucus serratus maleCDSF-serratus_M_contig1065 2335..2414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1065.646.1

>prot_F-serratus_M_contig1065.646.1 ID=prot_F-serratus_M_contig1065.646.1|Name=mRNA_F-serratus_M_contig1065.646.1|organism=Fucus serratus male|type=polypeptide|length=46bp
MYACDWFGSVTSGTQSRKIGGGDGDRAPLSTPAGDMDKCDFQELAD
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mRNA from alignment at F-serratus_M_contig1065:768..2414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1065.646.1 ID=mRNA_F-serratus_M_contig1065.646.1|Name=mRNA_F-serratus_M_contig1065.646.1|organism=Fucus serratus male|type=mRNA|length=1647bp|location=Sequence derived from alignment at F-serratus_M_contig1065:768..2414+ (Fucus serratus male)
TCGTCTCCCTGCACTCCGATGCTTCACTTCATCGGATGGAACATGATGGA
GTGTCGCAGCGCTCGTAGAAGAGCATGTACGCCTGTGATTGGTTTGGCAG
CGTCACAAGCGGCACGCAGTCCCGGAAAATAGGCGAGTCGTTTTAGTACA
CAAATACCATTGCAGCTAACGCAAAACCCGCGTTTGCAATTCGCAAACGT
AATTGGCTATCGTACATACAGCCCACGTTTGCCACAGCACGCACATAAGT
TGAGACGCTTGACGGATTTCTCTAGCTAAGTCAGGTGGGCAGCATGCAGG
CAATATTCCTCGTGTCAGTCGTACTGTCGAGGATACTCTCAATAGGCCAT
TAGACTAGGCCCAGAGCATTCACAGTTCCTCCAAGCTATATATCGACAGA
TGCTAAGCGCCGTACGCACCTCACAGTTCTTGACCTCCTGAAGTGTAGCG
GGCCGGACTGTGGCATCGCTGGCATATTTCCAGCCGTCCTTGTCTTGCAC
GTAGGCGACGTAGTGCCCCCAAGAGAGCTGCCGCGGTGTTGCACCAGACC
GAAGAGGCGGTAACGGGTTTCCTCCGGGGAAAGCGGTGCCTGTGAAACAT
CGCCACGAGTAGATACGAAATACGTTGGATGCGCGACAAGAGCACTGGGT
GACTTTTGAACCCATGTGAAAAAGTGTACATGGCTTCAGTAAAGTTAGCG
CTTGAAGAGCAGCGCAAGCGCGATTAGCTCTGACGTACGGTAATCGTAAA
GCGCCATATACGGAACACCGAGAACACCGCTCCAAAACAGATGAGGATTC
TGCGCTCAGAAACGTTAACGACTAGTGAAAAATCAGTAAGGCGTTTCTCT
AGCACTTGCCCCGCCCCTGAACCACCCAAGTACTCTGTGTAAGAACAACT
CAAGCCAAAACAAAGAGACCGTATGCTTTTTCTCGCCACGGAGCAGAATA
CACACACACACCGAAAATTCGCTTCATCTTTTTGCCCTCGCACCTGAGAG
TCCTGCCAGAAATACGGCGACATATCTAGGTCAAGATCAAATTCGACTCT
TCGGCAGGTCTTTCTTGTGGCCTGGAGCCGCTGCAGGTGGCACACCAGAA
CACCGGGGGAGTCCCGAGCATGAGGAGGCGTTTGCGAGCGTCCTGCCTTG
ACTTCCCACCGCCCTCGTCTTTCATGCCTTGGCTGCTCACCCTTCGCGTG
CAGCACGCCTGACAGTTGAAGCCATTGCCATCCGCCGCGACCAGCGCTTC
TTCGGCCATAAAATGGTCCAGGCAATCATACATGCTGACTGCCAGCGAGT
CGCGCCCCTCCACCTTCGTGGCCCGCGCCAGCGGCTCCACCAATCGATTC
AGGGGATTTTTGGGGCAGGCGAACGTGTCGAAGGTAGTGAGGGGGACATC
GGAAACATCTGCGGCGGATTCACCCTCTTCATCTTCGCTCTTCATGCTCT
CGTCTGTTTCGCTCTCCACGAGGACGGCGTCGCTGCTATTCGATCCCTTT
CGTCCCAGCGTCCCTTCAGGATCCATAATATTAACGCCTCCAAACTGCGC
TGTCGCTTGGTCCCCAGGTGGAGGTGACGGCGACCGCGCGCCATTGTCCA
CACCTGCAGGAGACATGGATAAGTGCGACTTCCAAGAGCTTGCCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1065:768..2414+

>mRNA_F-serratus_M_contig1065.646.1 ID=mRNA_F-serratus_M_contig1065.646.1|Name=mRNA_F-serratus_M_contig1065.646.1|organism=Fucus serratus male|type=CDS|length=276bp|location=Sequence derived from alignment at F-serratus_M_contig1065:768..2414+ (Fucus serratus male)
ATGTACGCCTGTGATTGGTTTGGCAGCGTCACAAGCGGCACGCAGTCCCG
GAAAATAGATGTACGCCTGTGATTGGTTTGGCAGCGTCACAAGCGGCACG
CAGTCCCGGAAAATAGGTGGAGGTGACGGCGACCGCGCGCCATTGTCCAC
ACCTGCAGGAGACATGGATAAGTGCGACTTCCAAGAGCTTGCCGACGTGG
AGGTGACGGCGACCGCGCGCCATTGTCCACACCTGCAGGAGACATGGATA
AGTGCGACTTCCAAGAGCTTGCCGAC
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