mRNA_F-serratus_M_contig1064.644.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1064.644.1
Unique NamemRNA_F-serratus_M_contig1064.644.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1064.644.1 vs. uniprot
Match: A0A183MV63_9TREM (Helicase ATP-binding domain-containing protein n=1 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183MV63_9TREM)

HSP 1 Score: 103 bits (257), Expect = 4.040e-23
Identity = 57/125 (45.60%), Postives = 79/125 (63.20%), Query Frame = 1 
Query:    1 MPSFDIEGTPVVFPFKPYDCQLTYIRGVVTALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMESQPPPPPATELAYEQTVTDLSRPRQPQQNRTAGVSGRPALPSVVIYASRTHSQLSQA 375
            MP   I+G  + FP++PYDCQ+ Y+  V+ +LNE K+A+LESPTGTGKTLCLLCASLAW  K A++++S         +    T  ++       QN  A + G+      +I+ASRTHSQL+QA
Sbjct:    1 MPQIAIDGVEIDFPYQPYDCQIEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAWLDKQANSVQSITNAKHQNIMGKRPTNDNVDNTLS-HQNFLASL-GKVNNGCKIIFASRTHSQLAQA 123
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BLAST of mRNA_F-serratus_M_contig1064.644.1 vs. uniprot
Match: A0A504YJD0_FASGI (Regulator of telomere elongation helicase 1 n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YJD0_FASGI)

HSP 1 Score: 103 bits (256), Expect = 5.530e-23
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 1 
Query:    1 MPSFDIEGTPVVFPFKPYDCQLTYIRGVVTALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMESQPPPPPATELAYEQTVTDLSRPRQPQQNRTAGVSGRPALPSVVIYASRTHSQLSQA-----RTGYLHAYI 402
            MP+ +I G  + FP +PY CQ+ Y++ ++TALN ++NA+LESPTGTGKTLCLLC SLAW    +S +  + P    ++ +   TV  L+ P    +        RP L + VI+ASRTHSQL+QA     +T Y H  +
Sbjct:    1 MPTVNISGVGIEFPHEPYPCQVEYMKELLTALNNNQNAILESPTGTGKTLCLLCTSLAWISSISSGVSLRNPNRHESKPSLGPTVCFLADPFVEVETTEL----RPPL-AKVIFASRTHSQLAQAVKVLKQTAYAHRNV 134
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BLAST of mRNA_F-serratus_M_contig1064.644.1 vs. uniprot
Match: A0A7S4V0H7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V0H7_9DINO)

HSP 1 Score: 103 bits (256), Expect = 6.720e-23
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 1 
Query:    1 MPSFDIEGTPVVFPFKPYDCQLTYIRGVVTALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMESQPPPPPATELAYEQTVTDLSRPRQPQQNRTAGVSGRPALPSVVIYASRTHSQLSQA-----RTGYLHAYIL 405
            MP++D++G PV FP++ YDCQL Y++ V+ AL+   NALLESPTGTGKTLCLLCA+LAW+++  S   +Q         ++E  V D   P Q       G   R      + Y+SRTHSQL Q      RT Y  A ++
Sbjct:   20 MPTYDLDGVPVEFPYEAYDCQLAYMKAVIRALDGGHNALLESPTGTGKTLCLLCAALAWRRQRESRAAAQ-------RASWEAQV-DGDAPAQ-----QLGACPR------IWYSSRTHSQLKQVIHELKRTSYRPASVV 140
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BLAST of mRNA_F-serratus_M_contig1064.644.1 vs. uniprot
Match: C4J9W5_MAIZE (Helicase ATP-binding domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=C4J9W5_MAIZE)

HSP 1 Score: 99.8 bits (247), Expect = 7.480e-23
Identity = 60/126 (47.62%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:    1 MPSFDIEGTPVVFPFKPYDCQLTYIRGVVTALNESKNALLESPTGTGKTLCLLCASLAWQQKNASAMESQPPPPPATELAYEQTVTDLSRPRQPQQNR--TAGVSGRPALPSVVIYASRTHSQLSQ 372
            MP + I G  V FPF  YDCQ+TY+  V+ +L + KNALLESPTGTGKTLCLLCASLAW++     +          +L Y       S+P   QQ+   T+    +   P V+IYASRTHSQL Q
Sbjct:    1 MPVYSIRGVNVDFPFDAYDCQITYMDRVIESLQQGKNALLESPTGTGKTLCLLCASLAWRRTFGEFLRVGRGGGGTKQLPYG------SQPSASQQSEDSTSQKQQQSRYP-VIIYASRTHSQLRQ 119
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BLAST of mRNA_F-serratus_M_contig1064.644.1 vs. uniprot
Match: A0A484EEU3_BRELC (Helicase ATP-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEU3_BRELC)

HSP 1 Score: 100 bits (248), Expect = 7.730e-23
Identity = 62/127 (48.82%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:    1 MPSFDIEGTPVVFPFKPYDCQLTYIRGVVTALNESKNALLESPTGTGKTLCLLCASLAWQ---QKNASAMESQPPPPPATELAYEQTVTDLSRPRQPQQNRTAGVSGRPALPSVVIYASRTHSQLSQ 372
            M S D+ G PV FPF PYD Q+ Y+  V+ AL   +NA+LESPTGTGKTLCLLCA+LAW+   QK   A        P+T LAYE    D       ++N T        LP + IY+SRTHSQL Q
Sbjct:    1 MVSLDVCGIPVEFPFPPYDSQIIYMEKVLLALMSKQNAILESPTGTGKTLCLLCATLAWRRELQKKLRASNLSLTKRPSTLLAYEGYEID-------KENETQ------QLPRI-IYSSRTHSQLKQ 113
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1064.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A183MV63_9TREM4.040e-2345.60Helicase ATP-binding domain-containing protein n=1... [more]
A0A504YJD0_FASGI5.530e-2343.17Regulator of telomere elongation helicase 1 n=1 Ta... [more]
A0A7S4V0H7_9DINO6.720e-2343.57Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
C4J9W5_MAIZE7.480e-2347.62Helicase ATP-binding domain-containing protein n=1... [more]
A0A484EEU3_BRELC7.730e-2348.82Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1064contigF-serratus_M_contig1064:279788..281603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score107.8
Seed ortholog evalue4e-21
Seed eggNOG ortholog6183.Smp_136280.1
Preferred nameRTEL1
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000166,GO:0000278,GO:0000723,GO:0000732,GO:0000781,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006282,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009987,GO:0010569,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019725,GO:0019899,GO:0022402,GO:0030554,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042592,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045005,GO:0045910,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051716,GO:0060249,GO:0060255,GO:0061820,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070182,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090657,GO:0097159,GO:0097367,GO:0098687,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902990,GO:1903047,GO:1904353,GO:1904355,GO:1904356,GO:1904358,GO:1904429,GO:1904430,GO:1904505,GO:1904506,GO:1904533,GO:1904535,GO:2000779,GO:2001020,GO:2001021,GO:2001251,GO:2001252
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGs38BE8@33154,3BBTE@33208,3CSUP@33213,COG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons3
Model size411
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1064.644.1prot_F-serratus_M_contig1064.644.1Fucus serratus malepolypeptideF-serratus_M_contig1064 279788..281603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928906.794079-CDS-F-serratus_M_contig1064:279787..2798921622928906.794079-CDS-F-serratus_M_contig1064:279787..279892Fucus serratus maleCDSF-serratus_M_contig1064 279788..279892 +
1690962623.5506065-CDS-F-serratus_M_contig1064:279787..2798921690962623.5506065-CDS-F-serratus_M_contig1064:279787..279892Fucus serratus maleCDSF-serratus_M_contig1064 279788..279892 +
1622928906.8067908-CDS-F-serratus_M_contig1064:280767..2808721622928906.8067908-CDS-F-serratus_M_contig1064:280767..280872Fucus serratus maleCDSF-serratus_M_contig1064 280768..280872 +
1690962623.5631516-CDS-F-serratus_M_contig1064:280767..2808721690962623.5631516-CDS-F-serratus_M_contig1064:280767..280872Fucus serratus maleCDSF-serratus_M_contig1064 280768..280872 +
1622928906.8167727-CDS-F-serratus_M_contig1064:281402..2816031622928906.8167727-CDS-F-serratus_M_contig1064:281402..281603Fucus serratus maleCDSF-serratus_M_contig1064 281403..281603 +
1690962623.5808556-CDS-F-serratus_M_contig1064:281402..2816031690962623.5808556-CDS-F-serratus_M_contig1064:281402..281603Fucus serratus maleCDSF-serratus_M_contig1064 281403..281603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1064.644.1

>prot_F-serratus_M_contig1064.644.1 ID=prot_F-serratus_M_contig1064.644.1|Name=mRNA_F-serratus_M_contig1064.644.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MPSFDIEGTPVVFPFKPYDCQLTYIRGVVTALNESKNALLESPTGTGKTL
CLLCASLAWQQKNASAMESQPPPPPATELAYEQTVTDLSRPRQPQQNRTA
GVSGRPALPSVVIYASRTHSQLSQARTGYLHAYILA*
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mRNA from alignment at F-serratus_M_contig1064:279788..281603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1064.644.1 ID=mRNA_F-serratus_M_contig1064.644.1|Name=mRNA_F-serratus_M_contig1064.644.1|organism=Fucus serratus male|type=mRNA|length=1816bp|location=Sequence derived from alignment at F-serratus_M_contig1064:279788..281603+ (Fucus serratus male)
ATGCCTAGCTTTGACATTGAGGGTACGCCTGTGGTTTTCCCTTTCAAGCC
CTATGACTGTCAACTGACCTACATCCGTGGTGTTGTGACAGCGCTGAATG
AGTCGGTGAGTTGTCTACGAACTACAAAACAACAGTGCTTTACTGGTGAA
AGTTGGGTCGACTGGAAGCTGGAAGTGCCTATATGACTTATTCCGCACTA
CGTGGAGCAGCATGTAAGTCGGAGGAGCTTCATCTACAGCAGAATTACAG
GCCACACAATCTCAGCAGCTTCCGTTTGAATTGGGGACGTTCCACAGGAG
CCGTTCTGTCTGGCCCTTTGATTCTATCTGCTAGAAGACAATGCCTCAGT
ACAGTTTGAACTTCACTCGCACCACTAATATGTTGAACAAAATAATACTA
TTATAATAAAGTACCCACGTTGTTGCATCGTTTTACCTTAGTTTGTACTG
AAAATCCCGAACTTCCCCGTAGAAGTAAAGCAAGCGCAATGCAAGCAGCC
AGCTCACCAGGTGGGATTCAGCTGCCGCTTTTCGAAAGTCGAGGAGGATT
ATTTATACTTTCAAACACCAGAGGCGAACAAGCAAGTAAGTACCGTATTT
ACTACTTTTTCTTGTCCAGCCTCGTTTCTCGTCTCGAAGAAAATGCTTGT
GAAAACAATCCGCAGCACAACTTTTTCCTGACTGGAGGATGCTCAGAAGG
TATAGGCGCGTTCTGGCTTTTCTTTAAACAAGCTTTCCATAGCAGGCACG
GAAGTGATCTCGACCGATCGCCATCAGAGGTAAGCTGGGGAAATTCCGTG
TTTGAATTTGCTTAAGCTACCCACACTCCCACGAACCTATCACCTCGTTG
TAGTCAAATATTGAGCAACAACATATGTTTTCCCTACCTGTATGTTTTTT
TTGCTACTAGAGGTGTCTCCAATTATCCCGTTGTCTCCCCCCTCCCTCAT
GATGTTGTATACTGTACCTTTTTAAAACAGAAAAATGCTCTCCTGGAAAG
CCCAACGGGCACCGGTAAGACCCTTTGTCTGCTCTGCGCCTCTCTGGCCT
GGCAACAGAAGAATGCCTCCGCCATGGAATCTCAGGTGAGCGTCAAAATC
AAGGCAAGAGCGCACCGCACCGTGGCGGAACAGCTGTCGCGCGGAGGGTC
TTGATGCTCTTTATGCGTGAGATATATGCCGCCCAGGCATGAAGCGAGCC
TTAAGGGGAATCAACAATGTTTCGGTGCTGGGCTTCCTTCTCGGCGTACG
CAGCCTGTGTAACCAAATCATTCCATCGACAGGAAAAAGGCACTTCTAAT
AGCAGAGGGTTGATGATTTGCATATGGCCTAGACATTACAATTAACACAA
ACGGAATTTCCTTTCATTTTTTTTCTCATCTGTTACCCCGTCCTTCTCAT
TTGGTTCACGAAGTCAGTTCCAAGGCAGAAATCTCTGATGTAGAGTTCGG
ATATCTTCAGCGACAAGTACCAACGCCTACATGACGGAAAAAGGGCGATA
ACTTTCCGTCTGGGCTGTGCGCGAATCCTTTGAAGAACCCGTGCTTCCAT
TTCTTCCTCTCATTTTCCCGACCCGCGCGCCTTTTGTGCCCTCGAATCAA
TCGTCGCTGGCGTAGCCTCCCCCTCCCCCGGCGACAGAGCTGGCGTACGA
GCAGACGGTCACCGACCTATCCCGTCCACGACAGCCGCAGCAGAATCGGA
CGGCGGGCGTCTCGGGTCGGCCGGCCTTGCCTTCCGTCGTGATCTACGCC
TCGCGCACCCACAGCCAGCTAAGCCAGGCACGCACGGGGTATTTACATGC
ATACATCCTTGCTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1064:279788..281603+

>mRNA_F-serratus_M_contig1064.644.1 ID=mRNA_F-serratus_M_contig1064.644.1|Name=mRNA_F-serratus_M_contig1064.644.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig1064:279788..281603+ (Fucus serratus male)
ATGCCTAGCTTTGACATTGAGGGTACGCCTGTGGTTTTCCCTTTCAAGCC
CTATGACTGTCAACTGACCTACATCCGTGGTGTTGTGACAGCGCTGAATG
AGTCGATGCCTAGCTTTGACATTGAGGGTACGCCTGTGGTTTTCCCTTTC
AAGCCCTATGACTGTCAACTGACCTACATCCGTGGTGTTGTGACAGCGCT
GAATGAGTCGAAAAATGCTCTCCTGGAAAGCCCAACGGGCACCGGTAAGA
CCCTTTGTCTGCTCTGCGCCTCTCTGGCCTGGCAACAGAAGAATGCCTCC
GCCATGGAATCTCAGAAAAATGCTCTCCTGGAAAGCCCAACGGGCACCGG
TAAGACCCTTTGTCTGCTCTGCGCCTCTCTGGCCTGGCAACAGAAGAATG
CCTCCGCCATGGAATCTCAGCCTCCCCCTCCCCCGGCGACAGAGCTGGCG
TACGAGCAGACGGTCACCGACCTATCCCGTCCACGACAGCCGCAGCAGAA
TCGGACGGCGGGCGTCTCGGGTCGGCCGGCCTTGCCTTCCGTCGTGATCT
ACGCCTCGCGCACCCACAGCCAGCTAAGCCAGGCACGCACGGGGTATTTA
CATGCATACATCCTTGCTTAGCCTCCCCCTCCCCCGGCGACAGAGCTGGC
GTACGAGCAGACGGTCACCGACCTATCCCGTCCACGACAGCCGCAGCAGA
ATCGGACGGCGGGCGTCTCGGGTCGGCCGGCCTTGCCTTCCGTCGTGATC
TACGCCTCGCGCACCCACAGCCAGCTAAGCCAGGCACGCACGGGGTATTT
ACATGCATACATCCTTGCTTAG
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