mRNA_F-serratus_M_contig1064.635.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1064.635.1 vs. uniprot
Match: D7FRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS3_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.470e-44 Identity = 154/491 (31.36%), Postives = 224/491 (45.62%), Query Frame = 1 Query: 1687 CLDGCES-DDRICDSSCKNGDPYGKLGCNTLDGDYGRYCRACYNDETEALAADSAAN----RAIMCDTKEPVTPYATRQLRAEASADAPHIARELQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRGGTIRSGRRSRNGRATTTPSPSTYGSCDPRVSWRWALSGAIARHSTQTPSSDLEAFISVSASTPLTNGIVRGDICAFISGGMNEIKQADVTVQSILEFVPGVRVVIAAEAGSKPVYESTAGIYPSVSVFDASSARTASLFADEYCGEGTKLIFYVETGSVISRTFTSKDTHSPRGDLLVVYSDARTSYRDF-EIARATSAVLGFKAPSFTHGADLMLPVGANKDLREEL--------TMGVDSGLTDKNA-------AALAALESHDVSS-VPQLLAALAYSKSTPGVWFVNPQAWVTEHLFKTASIWEVPLVKPRFTCTIDRSLYSSQTSAENAELLTKNLDFFQKGGLCENGVISAN 3093 C C+ D +CD C +G YG CN D CR C+++ + AL AD A R +MC+T EP P ++ +A+ + +G RS + T PS S + S R L A+A S A+T RG ICAF+ G + + + V+V S+LE +PG+RV IA +A + P V++ + S +L ADE CG+GT+LI+Y+E G V+SRTFT KDTH+ G+L+V ++A + A ++ +LG P+FTHG+DL+LP N LR L + G T + A +A + S VP++LAALAYS+S GV FVN + W EHLF SIW++P+VKPRF C+ D SL ++ + ++ K L+ F+ G CE G S + Sbjct: 191 CTTACQDMADTVCDYRCGSG-RYGDFNCNWRGVD--STCRLCFHETSVALLADEVAKAHGGRVVMCNTHEPPLPIGSK---TKATVED-------------------------------------------------TGHRSAD---TGDGLPSAVSS---QESKRKLL--AVADESNDP------------AATAYIGTTTRGHICAFMRGFVELLPETKVSVSSVLELMPGMRVAIATDAAGFQEFARAFAHLPDVAIELSKSVSHGALIADEVCGKGTRLIYYIEAGQVVSRTFTEKDTHTVLGNLIVSLANADEVPPVYARRALGSTVLLGVTTPTFTHGSDLILPAETNAQLRAVLGANQRLVAQTNAEDGDTGRQTERVYEYLADVAKMHRGSASIYVPEVLAALAYSRSPRGVTFVNIREWSHEHLFSEDSIWDIPMVKPRFGCSFDTSL--TRDGYDVGGMIAKELEGFKLGASCERGFKSVD 604
BLAST of mRNA_F-serratus_M_contig1064.635.1 vs. uniprot
Match: A0A6H5L0V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V3_9PHAE) HSP 1 Score: 175 bits (444), Expect = 3.280e-41 Identity = 154/518 (29.73%), Postives = 227/518 (43.82%), Query Frame = 1 Query: 1687 CLDGCESD-DRICDSSCKNGDPYGKLGCNTLDGDYGRYCRACYNDETEALAADSAAN----RAIMCDTKEPVTPYATRQLRAEASADAPHIARELQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRGGTIRSGRRSRNGRATTTPSPSTYGSCDPRVSWRWALSGAIARHSTQTPSSDLEAFISVSASTPLTNGIVRGDICAFISGGMNEIKQADVTVQSILEFVPGVRVVIAAEAGSKPVY---ESTA-------------------------GIYPSVSVFDASSARTASLFADEYCGEGTKLIFYVETGSVISRTFTSKDTHSPRGDLLVVYSDARTSY-RDFEIARATSAVLGFKAPSFTHGADLMLPVGANKDLREELTM-------------GVDSGLTDKNAAALAALESHDVSS---VPQLLAALAYSKSTPGVWFVNPQAWVTEHLFKTASIWEVPLVKPRFTCTIDRSLYSSQTSAENAELLTKNLDFFQKGGLCENGVISA 3090 C GCE+ D +CD C +G YG L CN G+ CR C++D++ A AD A R I+C+T EP R + +EA A +S GG + A++ P D + W+ IS T L++ + G +CAF+ G + + ++V+S+L+F+P +RV I V+ ES A G VS+ ++SS SL AD+ CG GT+LI+Y+E G V+SRTFT K TH+ R +L+V ++DAR + + A ++ +LGF AP+FTHG+DL+LP N LR L G + + D A + + H S+ VP++LAALAY + V FVN +AW E+LF SIW++P+VKPRF C+ D +L S + + L+ F+ G CE G S Sbjct: 158 CSAGCENTIDTVCDYRCGSG-LYGDLHCNWRG--LGKTCRLCFHDDSAAYLADEAVKAQGGRVILCNTLEP-----PRSIGSEAEA----------------------------------------RRNNSGGGRL----------ASSIPEN------DDPIGWQ------------------TNGTISDPVPTVLSSSM-GGQMCAFMRGYFEFLSETIISVRSVLDFMPAMRVAIVTHPRDFHVFNRSESFALSMRLTLAPSRIGPPNEFPKQSVEFGHLQHVSIGNSSSVEYGSLMADQLCGNGTRLIYYMEVGQVLSRTFTLKGTHTARQELIVSFADARDVHPENVRRAMGSTVLLGFPAPTFTHGSDLILPAETNGQLRALLGTKTRQGRRLEAGLHGAELDVEDLYAYLASVADLHRESTSIYVPEVLAALAYLQMPGEVHFVNIRAWSRENLFSVPSIWDIPMVKPRFGCSFDTAL--SLMGYRMDDFIANELEAFKWGAKCELGFKSV 590
BLAST of mRNA_F-serratus_M_contig1064.635.1 vs. uniprot
Match: D7FWG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG7_ECTSI) HSP 1 Score: 171 bits (433), Expect = 7.990e-41 Identity = 109/273 (39.93%), Postives = 149/273 (54.58%), Query Frame = 1 Query: 2362 VPGVRVVIAAEAGSKPVYESTAGIYPSVSVFDASSARTASLFADEYCGEGTKLIFYVETGSVISRTFTSKDTHSPRGDLLVVYS-----DARTSYRDFEIARATSAVLGFKAPSFTHGADLMLPVGANKDLREELTMG--------VDSGLTDKNAAA------------------LAALESHDVSS---VPQLLAALAYSKSTPGVWFVNPQAWVTEHLFKTASIWEVPLVKPRFTCTIDRSLYSSQTSAENAELLTKNLDFFQKGGLCENG 3078 +PGVRV IA VY+ G V V+++S A+L AD+ CG GTKLI+Y+ G V+SR FTSKDTHS RGDL+V Y+ D + R A T+ +LGF APSFT+G DL+LP G N +LR+ L V S L+ K A LA H + +P+LLA L+Y+++T GV F NP W +H+FK S+W++PLVKP F+C +D +L S + AE + +D F++G CE G Sbjct: 1 MPGVRVSIATSIFDYHVYDRVVGQRAGVHVWNSSHVDFAALKADKACGNGTKLIYYMSPGQVLSREFTSKDTHSSRGDLVVSYTKVNNLDTTNALR----AIITTLILGFNAPSFTYGTDLILPAGMNAELRKVLLSASSTLADDAVGSPLSLKKQEAPPTGDEEQQELDLLRDYVLATASIHQLQKNVFIPELLAGLSYARNTEGVSFHNPAQWTHDHIFKEKSVWDIPLVKPHFSCALDINL--SLQGLDVAEQIGNLVDSFRRGASCELG 267
BLAST of mRNA_F-serratus_M_contig1064.635.1 vs. uniprot
Match: A0A6H5KI77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI77_9PHAE) HSP 1 Score: 172 bits (435), Expect = 7.760e-40 Identity = 140/471 (29.72%), Postives = 206/471 (43.74%), Query Frame = 1 Query: 1786 YGRYCRACYNDETEALAADSAANRA-----------IMCDTKEPVTPYATRQLRAEASADAPHIARELQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRGGTIRSGRRSRNGR----ATTTPSPSTYGSCDPRVSWRWALSGAIARHSTQTPSSDLEAFISVSASTPLTNGIVRGDICAFISGGMNEIKQADVTVQSILEFVPGVRVVIAAEAGSKPVYESTAGIYPSVSVFDASSARTASLFADEYCGEGTKLIFYVETGSVISRTFTSKDTHSPRGDLLVVYSD-ARTSYRDFEIARATSAVLGFKAPSFTHGADLMLPVGANKDLR---------EELTMGVDSGLTDKNAAALAAL--------ESHDVSS---VPQLLAALAYSKSTPGVWFVNPQAWVTEHLFKTASIWEVPLVKPRFTCTIDRSLYSSQTSAENAELLTKNLDFFQKGGLCENGVISA 3090 YG CR+CY DE EALAAD + A IMCDT EP +AS+ +P R + +S S ++R R AT P P + GS + + G + + LE+ S ++ +C F+ G + + + ++V S+LEF+PG+RV +A V+ T G P V++ +AS +L AD+ CG GT+LI+Y+ G V+SRTFT KDTH GDL+V +D A+ A ++ +LGF P+FT+G DL+LP N+ LR EL + G ++ L + SH S+ +P GV F++ W ++LF ASIW++PL+KPRF C D SL S + A ++ K L+ F+ G CE G S Sbjct: 139 YGSTCRSCYTDEEEALAADRSLGNASSDPLLAGAHVIMCDTGEP----------PQASSCSP-ACRSMADTVCDSRCGTGLYGDYNCDWLGLGLTCRRCFQETSVAEFADSIAKTRGQRVILCATHEP-PLSVGSLKSHIKAKLGHGGGXXGDANAPTTFPLESDTSDRSTAVYVGSATIKQMCVFLRGYFDLLAETRLSVSSVLEFMPGMRVAVATHPRDFQVFNRTLGYLPDVTIENASRVEHGALIADQICGNGTRLIYYMNVGEVLSRTFTRKDTHGVLGDLIVSATDSAQVPLEHARRAAGSAVLLGFTTPAFTYGTDLILPAETNEQLRAVLHTKAKLNELVVVQAQGKHRRSRKKLGFMFEYLASVAHSHRSSATIYIPXXXXXXXXXXXXXGVTFLDMHHWSRKNLFSDASIWDIPLIKPRFGCAFDTSL--SLKGYDMASVMAKELEAFKFGASCELGFESV 595
BLAST of mRNA_F-serratus_M_contig1064.635.1 vs. uniprot
Match: A0A6H5KID1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID1_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.830e-38 Identity = 110/311 (35.37%), Postives = 161/311 (51.77%), Query Frame = 1 Query: 2278 RGDICAFISGGMNEIKQADVTVQSILEFVPGVRVVIAAEAGSKPVYESTAGIY--------------------------PSVSVFDASSARTASLFADEYCGEGTKLIFYVETGSVISRTFTSKDTHSPRGDLLVVYSDARTSYRDFEIAR---ATSAVLGFKAPSFTHGADLMLPVGANKDLR------EELTMGVDS--GLTDK------NAAALAALESHDVS-SVPQLLAALAYSKSTPGVWFVNPQAWVTEHLFKTASIWEVPLVKPRFTCTIDRSLYSSQTSAENAELLTKNLDFFQKGGLCENG 3078 RG ICAF+ G + V V S+L F+PG+R+ IA + +A I P+V+V +++ L AD CGE T+LI+Y++ G ++SRTFT KDTH+ GDL+V S T +A +S +LG P+FT+G+DL+LP N LR ++L D+ G +D+ A +A+ + ++P++LAALAYS+S PGV FVN W ++LF ASIW+VP+VKPRF C++DRSL + E+ K L+ + G CE G Sbjct: 142 RGQICAFMRGYSRLLPITKVAVSSVLHFMPGMRIGIATHPSDFEEFHRSAAILENCLEEVHKRSVDPGRSHSPETFGHLPNVTVGTSTNVEHGPLVADYICGEATRLIYYMDAGEMLSRTFTKKDTHTVMGDLIV--SLVNTDEVPQVVAARGMGSSVLLGVTTPTFTYGSDLILPAETNAQLRAVLEGNQKLVARTDAKHGHSDRVERIYEYLAGVASTHKDSATINIPEVLAALAYSRSPPGVTFVNMNEWSHQNLFSEASIWDVPMVKPRFGCSLDRSL--GNQGYDMGEIFAKELEALKLGASCEQG 448 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1064.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1064.635.1 >prot_F-serratus_M_contig1064.635.1 ID=prot_F-serratus_M_contig1064.635.1|Name=mRNA_F-serratus_M_contig1064.635.1|organism=Fucus serratus male|type=polypeptide|length=1035bp SDNAPRSPSEQRLGVIVPAHRGDLDRAVSSLGRWPAKCSPVTQKNVDIVLback to top mRNA from alignment at F-serratus_M_contig1064:29654..45835+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1064.635.1 ID=mRNA_F-serratus_M_contig1064.635.1|Name=mRNA_F-serratus_M_contig1064.635.1|organism=Fucus serratus male|type=mRNA|length=16182bp|location=Sequence derived from alignment at F-serratus_M_contig1064:29654..45835+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1064:29654..45835+ >mRNA_F-serratus_M_contig1064.635.1 ID=mRNA_F-serratus_M_contig1064.635.1|Name=mRNA_F-serratus_M_contig1064.635.1|organism=Fucus serratus male|type=CDS|length=6210bp|location=Sequence derived from alignment at F-serratus_M_contig1064:29654..45835+ (Fucus serratus male)back to top |