mRNA_F-serratus_M_contig1063.623.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI) HSP 1 Score: 144 bits (362), Expect = 5.020e-41 Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 2
Query: 125 SVSVRGSRVSFEAATTAPNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYGLHGAAKKFGLNLVKFSA 436
S S VS +AT+ + LQMR+R CDLLGK PNRKARVVTFSHKRIHKVQH+NLQ R+++WEEG R+VRLRLSTK IKTIDKYGL+ AAKKF L+LVKF+A
Sbjct: 26 SAFAGSSVVSKSSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A7S1E3X3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E3X3_9STRA) HSP 1 Score: 113 bits (282), Expect = 6.990e-29 Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 2
Query: 143 SRVSFEAATTAPNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKY-GLHGAAKKFGLNLVKF 430
S+ + A T N ++MR+R CDL GK PNR+ARVVTFSHKRI KVQHVNLQK++ + EE R V+LR+STKGIKT+ KY G+ AAKKFG++L KF
Sbjct: 37 SKAATAARVTQGNNMEMRARICDLTGKRPNRQARVVTFSHKRIKKVQHVNLQKKKFYSEELGRNVKLRISTKGIKTVTKYNGIDAAAKKFGVDLSKF 133
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A1Z5K4G8_FISSO (Large subunit ribosomal protein L28 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4G8_FISSO) HSP 1 Score: 111 bits (278), Expect = 2.040e-28 Identity = 67/103 (65.05%), Postives = 75/103 (72.82%), Query Frame = 2
Query: 131 SVRGSRVSFEAATTAPNG--LQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYG-LHGAAKKFGLNLVKF 430
S G F A NG +QMR+R CDLLGKTPNR+ARVVTFSHKR KVQ VNLQ +R F EE NR VRLRLSTKGIKT++KYG + AAKKF L+L KF
Sbjct: 20 SFTGYTPVFGAGQKTQNGSNMQMRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 122
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A7S2RVK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK4_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.070e-28 Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 2
Query: 125 SVSVRGSRVSFEA---ATTAPNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYGLHGAAKKFGLNLVKF 430
S + + VSF A TA + MR+R CDL GK PNR+A VTFSHKR KVQ VNLQK++L+W EG+R+V LR+STKG++T++KYG+ AAKK+GL+L F
Sbjct: 50 SFTAHSTPVSFAAPRSTRTAAREVSMRARFCDLTGKRPNRQAMAVTFSHKRNKKVQAVNLQKKKLWWPEGDRYVTLRISTKGLRTVEKYGIDKAAKKYGLDLASF 154
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A7R9U9Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Q4_9STRA) HSP 1 Score: 112 bits (279), Expect = 7.920e-28 Identity = 62/106 (58.49%), Postives = 74/106 (69.81%), Query Frame = 2
Query: 113 IRDDSVSVRGSRVSFEAATTAPNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYGLHGAAKKFGLNLVKF 430
R V+ S S TT N L MR+R CDL GK PNR A VVTFSHKR VQ+VNLQ RR +WEEG+R+VR+R+STK IKTI KYGL +AKK+G++L KF
Sbjct: 79 FRSAFVAAPVSSASSARMTTRGN-LVMRARNCDLTGKRPNRDAMVVTFSHKRNKTVQYVNLQNRRFWWEEGSRYVRMRVSTKAIKTIKKYGLEESAKKYGVDLSKF 183
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A7S0BX74_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX74_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.040e-26 Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = 2
Query: 143 SRVSFEAATTAPNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYG-LHGAAKKFGLNLVKF 430
+R E +T N + MR+R CDLLGK NRKARVVTFS+KRIHKVQ VNLQ ++ F EE R VRLRLSTKG+KT++KYG + AAKKFG+ L KF
Sbjct: 80 TRAVSEVRSTRGNNMVMRTRVCDLLGKKANRKARVVTFSNKRIHKVQEVNLQWKKYFSEELKRNVRLRLSTKGMKTVNKYGSIDAAAKKFGVELKKF 176
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.750e-26 Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 2
Query: 173 APNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYGLHGAAKKFGLNLVKFS 433
AP+ + M+ R CDL GK N KA VTFSH R HKVQ VNLQ R+L+WEEGNR+V++R+STK +KTI KYG+ AAKK+ ++L +FS
Sbjct: 33 APSSVSMKFRTCDLTGKRRNAKAMTVTFSHTRNHKVQKVNLQNRKLWWEEGNRYVKMRVSTKALKTIAKYGIDKAAKKYQIDLARFS 119
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A7S2REE2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REE2_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.800e-26 Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 2
Query: 179 NGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYG-LHGAAKKFGLNLVKF 430
+ L MR R CDLLGK NRKARVVTFSHKRIHKVQ VNLQ +R + ++ R VR+RLSTKGIKT++KYG + AAKKFGL+L KF
Sbjct: 25 SSLVMRERACDLLGKKANRKARVVTFSHKRIHKVQAVNLQWKRFYSDDLGRNVRVRLSTKGIKTVNKYGSIDAAAKKFGLDLTKF 109
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A448ZBR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBR3_9STRA) HSP 1 Score: 105 bits (263), Expect = 3.810e-26 Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 2
Query: 185 LQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYG-LHGAAKKFGLNLVKF 430
++MR+R+CDLLGK NRKARVVTFSHKRIHKVQ VNLQ +R F EE +R V+LRLSTKGIKT++K G + AAKKF ++L KF
Sbjct: 41 MEMRARECDLLGKKANRKARVVTFSHKRIHKVQEVNLQTKRFFSEELDRKVKLRLSTKGIKTVNKLGGIDAAAKKFKVDLKKF 123
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Match: A0A1E7FR95_9STRA (Ribosomal_L28-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR95_9STRA) HSP 1 Score: 104 bits (260), Expect = 7.870e-26 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 2
Query: 146 RVSFEAATTAPNGLQMRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRLRLSTKGIKTIDKYG-LHGAAKKFGLNLVKF 430
R + + + ++MR+R CDLLGK PNR+ARVVTFSHKRI KVQHVNLQ +R F EE +R V+LR+STKGIKTI+K G + AA+KF +NL F
Sbjct: 17 RQAVSQQRSGASSMEMRARVCDLLGKEPNRQARVVTFSHKRIKKVQHVNLQSKRFFSEELDRKVKLRVSTKGIKTINKLGGIDAAARKFKVNLKNF 112 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1063.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1063.623.1 >prot_F-serratus_M_contig1063.623.1 ID=prot_F-serratus_M_contig1063.623.1|Name=mRNA_F-serratus_M_contig1063.623.1|organism=Fucus serratus male|type=polypeptide|length=83bp MRSRQCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRRLFWEEGNRWVRback to top mRNA from alignment at F-serratus_M_contig1063:85576..90669- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1063.623.1 ID=mRNA_F-serratus_M_contig1063.623.1|Name=mRNA_F-serratus_M_contig1063.623.1|organism=Fucus serratus male|type=mRNA|length=5094bp|location=Sequence derived from alignment at F-serratus_M_contig1063:85576..90669- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1063:85576..90669- >mRNA_F-serratus_M_contig1063.623.1 ID=mRNA_F-serratus_M_contig1063.623.1|Name=mRNA_F-serratus_M_contig1063.623.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1063:85576..90669- (Fucus serratus male)back to top |