mRNA_F-serratus_M_contig1062.618.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1062.618.1
Unique NamemRNA_F-serratus_M_contig1062.618.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1062.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1062contigF-serratus_M_contig1062:137811..140479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size1661
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1062.618.1prot_F-serratus_M_contig1062.618.1Fucus serratus malepolypeptideF-serratus_M_contig1062 138991..140478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.7953644-UTR-F-serratus_M_contig1062:137810..1389901622928896.7953644-UTR-F-serratus_M_contig1062:137810..138990Fucus serratus maleUTRF-serratus_M_contig1062 137811..138990 -
1690962620.5152204-UTR-F-serratus_M_contig1062:137810..1389901690962620.5152204-UTR-F-serratus_M_contig1062:137810..138990Fucus serratus maleUTRF-serratus_M_contig1062 137811..138990 -
1622928896.8465648-UTR-F-serratus_M_contig1062:140478..1404791622928896.8465648-UTR-F-serratus_M_contig1062:140478..140479Fucus serratus maleUTRF-serratus_M_contig1062 140479..140479 -
1690962620.5585454-UTR-F-serratus_M_contig1062:140478..1404791690962620.5585454-UTR-F-serratus_M_contig1062:140478..140479Fucus serratus maleUTRF-serratus_M_contig1062 140479..140479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.8128881-CDS-F-serratus_M_contig1062:138990..1393321622928896.8128881-CDS-F-serratus_M_contig1062:138990..139332Fucus serratus maleCDSF-serratus_M_contig1062 138991..139332 -
1690962620.531012-CDS-F-serratus_M_contig1062:138990..1393321690962620.531012-CDS-F-serratus_M_contig1062:138990..139332Fucus serratus maleCDSF-serratus_M_contig1062 138991..139332 -
1622928896.8234363-CDS-F-serratus_M_contig1062:139563..1396791622928896.8234363-CDS-F-serratus_M_contig1062:139563..139679Fucus serratus maleCDSF-serratus_M_contig1062 139564..139679 -
1690962620.5389977-CDS-F-serratus_M_contig1062:139563..1396791690962620.5389977-CDS-F-serratus_M_contig1062:139563..139679Fucus serratus maleCDSF-serratus_M_contig1062 139564..139679 -
1622928896.8370886-CDS-F-serratus_M_contig1062:140456..1404781622928896.8370886-CDS-F-serratus_M_contig1062:140456..140478Fucus serratus maleCDSF-serratus_M_contig1062 140457..140478 -
1690962620.5473924-CDS-F-serratus_M_contig1062:140456..1404781690962620.5473924-CDS-F-serratus_M_contig1062:140456..140478Fucus serratus maleCDSF-serratus_M_contig1062 140457..140478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1062.618.1

>prot_F-serratus_M_contig1062.618.1 ID=prot_F-serratus_M_contig1062.618.1|Name=mRNA_F-serratus_M_contig1062.618.1|organism=Fucus serratus male|type=polypeptide|length=160bp
MAPCIIDETCGPALTITLEWSETDSDLDLFVTEPDESIVSFASMVGSAGF
LDMDVRSGPGIETYTIFRFLDPDSIAVLGDYEFHGRRFSGPIETNFTLVA
SLIDVEVLFETGDFTESRNTDTFRVSVTDYDPTCEDGTDAFDLGSRDSTS
SPEDKLSGR*
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mRNA from alignment at F-serratus_M_contig1062:137811..140479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1062.618.1 ID=mRNA_F-serratus_M_contig1062.618.1|Name=mRNA_F-serratus_M_contig1062.618.1|organism=Fucus serratus male|type=mRNA|length=2669bp|location=Sequence derived from alignment at F-serratus_M_contig1062:137811..140479- (Fucus serratus male)
GATGGCCCCCTGCATCATTGACGGTGTGTACTTTGCTCATAGCTTGACGC
CTTTCATCCCGCCACAGACACTTCTCAAGTCTTGCTTCGATGTGTGACGG
CGGGCGGCGATCGTTCTTACTTTCTGTTTACGACGAATTACGATTGAGCT
TATCGATCTGGGCGCCCTGCGGTCGCAGTTAGCCTTTCAGCTGAAAACTC
CATTTGTGGCGGCTAATAAATGTGCGCTTGTCGCGGCAGAACTTAACGTA
GATCCATGCCAGCGCAGGCGTAACGTCGGGCAGTTTCGTTGCATTCAAGT
GTTTCGTTGAGACCATACCTGAGAACGTTTTTTTTTTAAATGACAATAAC
CCTCTGACTAACAGTTTTGCAAACGGACGAGGCGACCCTTGTACGTACTG
CACAGTTACGAACGAAGTTTTTTTATCCAGAAAGACGCAAGTACCAGTCA
CTATAATGGCACAATCCAAACCCTGTCGCGAGAATTTCGTGCAGTCTTCC
TGTACGGTATCGACCATTGATGAAAGAGCAGTGAGTGATTCTCGTTCAGG
TTTTCTTTATCACGTTAACTCTGTTACTTATAGTTCCATCGAATGTCACT
TGCAGCAACGGTATCCGACGTCGAAGATAACGCCGTATACTGTGTGGCTG
AGGGTAAGACATGCCGTTGTATAGTCCCCCTTAGTTTATCTCACCAAAGT
TATCGGAGGTAAATTGCAAAGTGCGTGCAACATATAGAGTACACTATGCA
ATTAATCTCGTTTTTTGTCACCCCGATACCATTCCTCTGTGGTCTAACAG
AAACGTGCGGACCTGCGCTCACCATCACCTTGGAATGGTCAGAGACCGAC
AGCGATCTCGATCTCTTCGTGACGGAGCCCGACGAGTCGATTGTCAGTTT
TGCGAGCATGGTGGGGGTAAGTGCAAACTCGAACGGCGCCCGTCTGAGGC
ATGTTAATCTTTATTAGGGGTAGCTGCCGTATTTTCTACTCTCTCGGAGA
AGAAATGTTTAAGGGGTGGAATCCTCAGATTGTGACTGAACGATAAAGAC
TCAATAACCATGAATGACCTCCATATTTGACCCTGACCCCTCGTTTTCGC
TTCGTGTTGTCATACAACGCTCCATCCTAATCGCCCTGTGCCTCAAGAGC
GCTGGCTTCCTCGACATGGACGTCAGATCGGGTCCGGGAATAGAAACCTA
CACCATCTTCCGCTTTCTTGACCCTGACAGCATCGCTGTACTCGGAGACT
ACGAGTTCCACGGAAGGCGCTTTTCCGGTCCCATCGAGACGAACTTCACC
CTTGTTGCTAGCCTTATCGACGTAGAGGTCTTGTTCGAGACTGGTGACTT
CACGGAGAGTAGGAATACCGATACCTTCAGGGTTTCTGTCACCGACTACG
ATCCTACCTGTGAGGATGGCACGGACGCCTTTGACCTTGGTTCTAGGGAC
TCAACGTCGTCGCCCGAAGATAAACTCTCTGGGCGCTAGGGACTCAACGT
CGTCGTTGAACTTGGTTCTAGGGACTCAACGTCGTCGCCTTTGACCTTGG
TTCTAGGTTCCATTTTTTTTCCAGCAAGGGATGGGGTAACTAGCATATAT
GGCTGGGAATCGAGGCATTCAAGCTCGAAAGGGGGGAGATGCCCGGGGTG
TGATAGGTACATATTTTCGGCGTAATAAGGTAGTTTCGGGCGTGTGGTAC
AGGGTACCCAGGCATGTACGATATCGGCTATAGCCAAAGGATATCGCTCA
CGCCTGATGATTGGTCCTTAGTACGCACGTGAAGTCTTGGTTCTAGGGAC
TCAACGTCGTCGCCCGAAGATAAACTCACCTAATACTACACCCCGAGTTC
CAGACTTCGCGCGGGTGGGGGGCGTTATTGGAAGCTTTGGTCCCATTTTC
TTTTCCAGCAAGAGATGGGGTAACTAGCGTATACGGCTGGGAATCGAGAT
ACTCAAGCTCAAAAGGGGGGAGATGCCGGGGGTGTGATATGTATATTTTT
TCGGCATAATAAGTTAGTTTCGGGCGTGTGGTACAGTCTACCCAGACATG
CACGATATAGATTATAGCCGAAGGATATCGCTCACGCATGACGATTGGTT
TTGAGGACACACCGGAGCTCTTAGACGTTTGGGCTGCATGCGTGGAATAT
ACGGAAGAGTGGGACTCGAGCAGCAGTATATCCGGATCATCATAGTCTTG
GCTGACAGGGCTAATTGTTTACATGATTTCAAGAGGCATCAGAGAAAGGC
ACGCGGATCATAATTTTAGTGTGTACGAGTAATCATTTGAAACGCTGGCG
AGCATAGAGTGATGTTGTCAAAATAAATGCCAACTGTTATGTGGCAAACG
TTTCATATACCGGCACAGACGAACCGTCACCACGAAATAAATGCTCATCC
GTTCCACGTGCTCCCATGGGCGGCCGTGAAAGGTTTTTCTGACATCTAAG
CCTTGAGAATTGAGACTCACGTGGAGTACGCACCAATCAGCGAGTACATT
TTCCTTTTCCAAAAGTAACCGCGGGAGCAGGTACAGCGCTGTGGTATGTG
ATACCCCTCGATACTACGAGTATGGTAGAAGGCCGCAAATTTCATTTCAC
GGAGACATGCCTGTAATATCATTACACGCGCATGCGAGGTTCAGAGTCAA
AGGTTAAAAAATGTCGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1062:137811..140479-

>mRNA_F-serratus_M_contig1062.618.1 ID=mRNA_F-serratus_M_contig1062.618.1|Name=mRNA_F-serratus_M_contig1062.618.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig1062:137811..140479- (Fucus serratus male)
ATGGCCCCCTGCATCATTGACGATGGCCCCCTGCATCATTGACGAAACGT
GCGGACCTGCGCTCACCATCACCTTGGAATGGTCAGAGACCGACAGCGAT
CTCGATCTCTTCGTGACGGAGCCCGACGAGTCGATTGTCAGTTTTGCGAG
CATGGTGGGGAAACGTGCGGACCTGCGCTCACCATCACCTTGGAATGGTC
AGAGACCGACAGCGATCTCGATCTCTTCGTGACGGAGCCCGACGAGTCGA
TTGTCAGTTTTGCGAGCATGGTGGGGAGCGCTGGCTTCCTCGACATGGAC
GTCAGATCGGGTCCGGGAATAGAAACCTACACCATCTTCCGCTTTCTTGA
CCCTGACAGCATCGCTGTACTCGGAGACTACGAGTTCCACGGAAGGCGCT
TTTCCGGTCCCATCGAGACGAACTTCACCCTTGTTGCTAGCCTTATCGAC
GTAGAGGTCTTGTTCGAGACTGGTGACTTCACGGAGAGTAGGAATACCGA
TACCTTCAGGGTTTCTGTCACCGACTACGATCCTACCTGTGAGGATGGCA
CGGACGCCTTTGACCTTGGTTCTAGGGACTCAACGTCGTCGCCCGAAGAT
AAACTCTCTGGGCGCTAGAGCGCTGGCTTCCTCGACATGGACGTCAGATC
GGGTCCGGGAATAGAAACCTACACCATCTTCCGCTTTCTTGACCCTGACA
GCATCGCTGTACTCGGAGACTACGAGTTCCACGGAAGGCGCTTTTCCGGT
CCCATCGAGACGAACTTCACCCTTGTTGCTAGCCTTATCGACGTAGAGGT
CTTGTTCGAGACTGGTGACTTCACGGAGAGTAGGAATACCGATACCTTCA
GGGTTTCTGTCACCGACTACGATCCTACCTGTGAGGATGGCACGGACGCC
TTTGACCTTGGTTCTAGGGACTCAACGTCGTCGCCCGAAGATAAACTCTC
TGGGCGCTAG
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