mRNA_F-serratus_M_contig1062.616.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 109 bits (272), Expect = 2.940e-21 Identity = 60/120 (50.00%), Postives = 69/120 (57.50%), Query Frame = 2
Query: 38 AQVCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCIIGSDETCSNGFSGIEAQGVCCASGCPQCGGSGCGSQAQSVGLSADDCCVGRITSA 397
AQ CSNGL G ENSG CC CGTCGG GC G+ A + CC I A CS+ AAPCI+ +D+TCSNG +G E G CC+ GC CGG GC +G A CC I SA
Sbjct: 378 AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGA----ESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFENSGACCSVGCGTCGGQGC----SQLGEGAASCCTSNIISA 489
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.470e-20 Identity = 60/144 (41.67%), Postives = 84/144 (58.33%), Query Frame = 2
Query: 398 DVLCSEAGMAPCIIDETCGPALTITLEWSETDSDLDLFVTEPDESIVSFASMVGSAGFLDMDVRSGPGIETYTIFRFLDPDSIAVLGDYEFHGRRFSGPIETNFTLVASLIDVEVLF-ETGDFTESRNTDTFRVSVTDYDPTCG 826
D ++ A + + C P+LTITLEW+ SD+DL+V EP +V F++ G GFLD D G G E Y I LDP + VLG+YE + + +SG T + + + EV++ E GDF S +DTF VS++ YDPTCG
Sbjct: 294 DTAGADTAFALDVSNSACVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCG 437
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 106 bits (265), Expect = 2.090e-20 Identity = 60/144 (41.67%), Postives = 84/144 (58.33%), Query Frame = 2
Query: 398 DVLCSEAGMAPCIIDETCGPALTITLEWSETDSDLDLFVTEPDESIVSFASMVGSAGFLDMDVRSGPGIETYTIFRFLDPDSIAVLGDYEFHGRRFSGPIETNFTLVASLIDVEVLF-ETGDFTESRNTDTFRVSVTDYDPTCG 826
D ++ A + + C P+LTITLEW+ SD+DL+V EP +V F++ G GFLD D G G E Y I LDP + VLG+YE + + +SG T + + + EV++ E GDF S +DTF VS++ YDPTCG
Sbjct: 420 DTAGADTAFALDVSNSACVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCG 563
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 101 bits (251), Expect = 2.070e-18 Identity = 67/159 (42.14%), Postives = 87/159 (54.72%), Query Frame = 2
Query: 14 LLLVSSSNAQVCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCIIGSDET---------CSNGFS--GIEAQGVCCASGCPQCGGSGCGSQAQSVGLSADDCCVGRITSADVLCSEAGMAPCIIDETCGP 457
LL SS S G DG+ VCC AECGTCGG+GCGSR AGL+A++CC I A+V C +APC++ D + S F+ G+ CC++GC +CGGSGC + GL+ DCC I++ LCS G APCI+D P
Sbjct: 73 LLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGSGCGSR---AGLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGG--GLTGADCCTSDISN---LCSVTGAAPCIVDGDTSP 220
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.290e-18 Identity = 58/134 (43.28%), Postives = 78/134 (58.21%), Query Frame = 2
Query: 44 VCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCIIGSDETCSNGFSGIEAQGVCCASGCPQCGGSGCGSQAQSVGLSADDCCVGRITSADVLCSEAGMAPCIIDE 445
+CSNG G+++ CC+AECG CGG+ C + G GL A++CC I + CS + APC + ++TCSNGF GI++ CC + C CGGS C GL A++CC I LCS A APC +DE
Sbjct: 364 MCSNGFPGIQSGNACCLAECGGCGGSDCDALGG--GLGAENCCESDIVERGELCSIALEAPCYL--EDTCSNGFPGIQSGNACCLAECGGCGGSDCDQFGD--GLGAENCCESDIVEHGELCSIALEAPCYLDE 491
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 4.630e-15 Identity = 60/159 (37.74%), Postives = 76/159 (47.80%), Query Frame = 2
Query: 38 AQVCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCIIGSDE-------------------------TCSNGFSGIEAQGVCCASGCPQCGGSGCGSQAQSVGLSADDCCVGRITSADVLCSEAGMAPCII 439
A C G+ GV+ S VCC CG+CGG GC R D G D+CC IR A++ CS + APCI+ S E TC G G++A VCCA C CGG GC + D+CC I +A++ CS G APCI+
Sbjct: 408 AGTCDGGIVGVQASDVCCALSCGSCGGDGCSDR--DGGE--DNCCGVEIRTANLDCSVTGEAPCIVTSPEPSTXXXXXXXXXXXXXTPAPSRAAGTCEGGIVGVQASNVCCALSCGSCGGDGCSDRDGGE----DNCCGVEIRTANLDCSVTGEAPCIV 558
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.060e-12 Identity = 59/197 (29.95%), Postives = 75/197 (38.07%), Query Frame = 2
Query: 38 AQVCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCIIGSD--------------------------------------------------------------ETCSNGFSGIEAQGVCCASGCPQCGGSGCGSQAQSVGLSADDCCVGRITSADVLCSEAGMAPCIID 442
A VCSNG+ G+++ CC+AECG CGG+ C G GL D CC I D CS + AAPC++ + CSNG GI++ CC + C CGGSGC GL D+CC I LCS APC++D
Sbjct: 1605 ADVCSNGIPGIQSGNACCLAECGACGGSDCAEFGG--GLGEDYCCQSEIEDFGELCSATMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDVCSNGIPGIQSGNACCLAECGGCGGSGCAQLGG--GLGEDNCCQSEIEDFGELCSVTMAAPCVVD 1797
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.770e-10 Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 2
Query: 11 GLLLVSSSNAQVCSNGLDGVENSG-VCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCII 235
G+ S+ + Q CSNG++G+++ G VCC CG CGG GCGS G L + CC+ ++ +V+C D+NAAPCII
Sbjct: 648 GISEESADDTQTCSNGIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.110e-9 Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2
Query: 41 QVCSNGLDGVENSG-VCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCII 235
Q CSNG++G+++ G VCC CG CGG+GCGS G GL CC+ + +V+C D+NAAPCII
Sbjct: 681 QTCSNGIEGIDHKGEVCCPLACGQCGGSGCGSAGSANGLDGASCCSSEVLAGNVYCEDTNAAPCII 746
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 4.480e-7 Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 2
Query: 44 VCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLSADDCCAGRIRDADVFCSDSNAAPCII 235
VCSNG G+++ CC+AECG CGG GCG G GL AD CC I + CS + AAPC I
Sbjct: 118 VCSNGFPGIQSGVSCCLAECGECGGRGCGEFGG--GLGADKCCESDIEEYGELCSIALAAPCYI 179 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1062.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1062.616.1 >prot_F-serratus_M_contig1062.616.1 ID=prot_F-serratus_M_contig1062.616.1|Name=mRNA_F-serratus_M_contig1062.616.1|organism=Fucus serratus male|type=polypeptide|length=299bp MLGLLLVSSSNAQVCSNGLDGVENSGVCCVAECGTCGGAGCGSRGQDAGLback to top mRNA from alignment at F-serratus_M_contig1062:103773..107566- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1062.616.1 ID=mRNA_F-serratus_M_contig1062.616.1|Name=mRNA_F-serratus_M_contig1062.616.1|organism=Fucus serratus male|type=mRNA|length=3794bp|location=Sequence derived from alignment at F-serratus_M_contig1062:103773..107566- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1062:103773..107566- >mRNA_F-serratus_M_contig1062.616.1 ID=mRNA_F-serratus_M_contig1062.616.1|Name=mRNA_F-serratus_M_contig1062.616.1|organism=Fucus serratus male|type=CDS|length=1794bp|location=Sequence derived from alignment at F-serratus_M_contig1062:103773..107566- (Fucus serratus male)back to top |