mRNA_F-serratus_M_contig1061.610.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1061.610.1
Unique Name	mRNA_F-serratus_M_contig1061.610.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 9.160e-103
Identity = 145/167 (86.83%), Postives = 159/167 (95.21%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREERNMRGSR 590
            MT RIY+GHLSP+TRD+DLDRAFGRYGRIEKIDVRMGFAFIEF+DRRDAE+AVA+MDGRE DGARIVVQPGRGHRPNGPKFATRRTEHRIT+EG+DSHTSWQDLKDFGRQAGQVL+SDVFFR GRRWGVVEY++R+DM+ AIR LDDTRLGGKYIRVREE + R SR
Sbjct:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVREENSGRDSR 167

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: A0A7S0Q5F1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5F1_9EUKA)

HSP 1 Score: 154 bits (389), Expect = 8.830e-44
Identity = 69/141 (48.94%), Postives = 104/141 (73.76%), Query Frame = 3

Query:   96 TRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIR 518
            TR+YVG LS YTR++DL+R F RYGR+E++D++ GFAF+EF D RDA++AV DM GR++DG RI V+  +G R  G +   + +  RI +EG+D  TSWQDLKDFGR+ G ++++DV+    +++G++EY  +ED   A++
Sbjct:    5 TRVYVGGLSSYTRERDLERVFDRYGRVERVDLKRGFAFVEFSDDRDADDAVYDMHGRDLDGRRITVEHAKGGR--GARGPAKGSGFRIKVEGLDMRTSWQDLKDFGRKVGDIMYTDVWVDGSKKFGIMEYGRKEDYEEALK 143

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: A0A7S0DYD6_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DYD6_9CRYP)

HSP 1 Score: 146 bits (369), Expect = 1.960e-39
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = 3

Query:   99 RIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRV 560
            R+YVGHLS   R++DLD  F R+G+I  I ++ GFAF+E+D   DAE AV  MDG  ++G RI+V+  +     GPK  +    +R+  E +  +TSWQDLKDF R+AG+V+F+DVF   G R G++EY TR+DM  A+ +LD T L    +R+
Sbjct:   13 RVYVGHLSSRVRERDLDDEFSRFGKIRDISLKQGFAFVEYDHSEDAEYAVRKMDGVNLEGMRILVEFAKETPKRGPKGGSG---YRLYAENLSQNTSWQDLKDFARKAGKVIFTDVFSERGERLGIIEYATRDDMEEALYKLDGTELHRSKVRL 163

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: A0A2C9KFU7_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KFU7_BIOGL)

HSP 1 Score: 146 bits (368), Expect = 2.990e-39
Identity = 77/181 (42.54%), Postives = 117/181 (64.64%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGH-RPNGPKFATR-------------RTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREERNMRGSR 590
            M TR+Y+G LS + R+KD++R F  YGRI  I ++ G+ F+EFDD RDA++AV +++G+E+ G R+V++  RG  RP  P   +R             RT+HR+ +E + S  SWQDLKD+ RQAG+V ++D   RH R  G++E+ T  D+R AI +LD T + G+ IR+ E++  + SR
Sbjct:    1 MGTRVYLGRLSYHAREKDIERFFRGYGRIRDIMLKNGYGFVEFDDYRDADDAVYELNGKELCGERVVIEHARGSGRP--PASRSRGSSAWLDKYGPPTRTDHRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKRH-RNEGIIEFATAADLRNAIEKLDGTEINGRKIRLIEDKVKKHSR 178

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: L1JS00_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JS00_GUITC)

HSP 1 Score: 146 bits (368), Expect = 3.510e-39
Identity = 72/157 (45.86%), Postives = 103/157 (65.61%), Query Frame = 3

Query:   99 RIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREE 569
            R+YVGHLS   R++DLD  F R+G+I  I ++ GFAF+E+D   DAE AV  MDG  ++G RI+V+  +     GP+  +    +RI  E +  +TSWQDLKDF R+AG+V+++DVF   G + GV+EY TREDM  A+ +LD T L    +R+ +E
Sbjct:    6 RVYVGHLSSRVRERDLDDEFSRFGKIRDISLKQGFAFVEYDHSEDAEYAVRKMDGVNLEGMRILVEFAKETPKRGPRGGSG---YRIYAENLSQNTSWQDLKDFARKAGKVIYTDVFSERGEKLGVIEYATREDMEDALYKLDGTELHRSKVRLVKE 159

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: A0A068RLW3_9FUNG (Alternative splicing factor asf n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RLW3_9FUNG)

HSP 1 Score: 145 bits (367), Expect = 5.780e-39
Identity = 76/169 (44.97%), Postives = 111/169 (65.68%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNGP--KFATRRTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREERNMRGSR 590
            M+TR+Y+G L+   RD+DL+R F  YG I +I+++ G+ F+EF D RDAE+ V D  G+E  G RI+V+  RG R      +   RR+++R+T+E I S TSWQDLKD  R+AG+V F+DV  R     GVVE+  R DM  A+++LDD+ L G+ +R+ E+ + R  R
Sbjct:    1 MSTRVYIGRLARDARDRDLERLFKSYGEIREINIKSGYGFVEFKDPRDAEDVVYDFHGKEFLGERIIVEMARGARRGREDRRRVDRRSDYRLTVENIPSGTSWQDLKDLMRKAGEVTFADVI-RSRPGEGVVEFAHRSDMEYALKKLDDSELNGQRVRLFEDTSRRRGR 168

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: A0A401NNI1_SCYTO (Uncharacterized protein n=4 Tax=Scyliorhinus TaxID=7829 RepID=A0A401NNI1_SCYTO)

HSP 1 Score: 147 bits (371), Expect = 7.110e-39
Identity = 77/184 (41.85%), Postives = 114/184 (61.96%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGR----GHRPNGPKFATR----------------RTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREERNMR 581
            M+ R+++G LSPY  +K+++R F  YGRI++ID++ GF F+EF+D RDAE+AV ++DG+E+   R+ V+  R    G R  G ++  R                RTE+R+ +E + S  SWQDLKDF RQAG+V F+D   RH    G+VE+ +  D++ A+ +L  T L G+ IRV EER  R
Sbjct:   73 MSARVFIGRLSPYATEKNVERFFRGYGRIKEIDLKNGFGFVEFEDYRDAEDAVYELDGKELCNERVTVEHARARNRGGRGGGGRYQGRFSQSYQRSGGRNGPPVRTENRVIVENLSSRVSWQDLKDFMRQAGEVTFADAH-RHKMNEGIVEFASYSDVKNALEKLSGTELNGRKIRVVEERKQR 255

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: UPI001403BE55 (serine/arginine-rich splicing factor 5-like n=3 Tax=Elasmobranchii TaxID=7778 RepID=UPI001403BE55)

HSP 1 Score: 144 bits (364), Expect = 2.200e-38
Identity = 74/180 (41.11%), Postives = 115/180 (63.89%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNG---------------PKFATR-----RTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREE 569
            M++R+++G LSP+ R++D+++ F  YGRI++ID++ GF F+EFDD RDA++AV ++DG+E+   R+ V+  R  RP G               P+  +R     RTE+R+ +E + S  SWQDLKDF RQAG+V F+D   RH    GVVE+ +  D++ A+ +L  T + G+ IR+ EE
Sbjct:    1 MSSRVFIGRLSPHARERDVEKFFKGYGRIKEIDLKNGFGFVEFDDHRDADDAVYELDGKELCSERVTVEHARA-RPRGGRGGGRYQGRFSPRRPRSESRNGPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAH-RHKMNEGVVEFASYSDLKNAVEKLSGTEINGRKIRLIEE 178

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: UPI00065B6AAF (serine/arginine-rich splicing factor 6 isoform X1 n=3 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B6AAF)

HSP 1 Score: 144 bits (363), Expect = 2.660e-38
Identity = 75/190 (39.47%), Postives = 113/190 (59.47%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRG-----------------------HRPNGPKFATRRTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREERNMRGSR 590
            M TR+Y+G LS + R+KD+DR F  +GRI  I ++ G+ F+EFDD RDA++AV +++G+E+ G R+ V+  RG                        R N       RT+HR+ +E + S  SWQDLKD+ RQAG+V ++D   +H R  G++E+ T  D+R AI +LD T + G+ IR+ E++  R SR
Sbjct:    1 MGTRVYIGRLSYHAREKDIDRFFRGFGRIRDIMLKNGYGFVEFDDYRDADDAVYELNGKELCGERVSVEHARGPRSDDSFRDRGFRGRRGXXXXXXRRDNSRYGPPTRTDHRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKKH-RNEGIIEFATSSDLRNAIDKLDGTEINGRKIRLLEDKPRRNSR 189

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BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Match: A0A4W3K1A3_CALMI (Uncharacterized protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3K1A3_CALMI)

HSP 1 Score: 143 bits (360), Expect = 4.890e-38
Identity = 73/179 (40.78%), Postives = 110/179 (61.45%), Query Frame = 3

Query:   90 MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAEEAVADMDGREIDGARIVVQPGRGHRPNGPKFATR------------------RTEHRITIEGIDSHTSWQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRLGGKYIRVREER 572
            M+ R+++G LSPY  +K++++ F  YGRI +ID++ GF F+EF+D RDAE+AV ++DG+E+   R+ V+  R  R  G +   R                  RTE+R+ +E + S  SWQDLKDF RQAG+V F+D   RH    G+VE+ +  D++ A+ +L  T L G+ IR+ EER
Sbjct:    1 MSARVFIGRLSPYATEKNVEKFFRGYGRIREIDLKNGFGFVEFEDYRDAEDAVYELDGKELCNERVTVEHARARRGGGGRGPGRYRFGQLRPRGGGRNGPPVRTENRVIVENLSSRVSWQDLKDFMRQAGEVTFADAH-RHKLNEGIVEFASYSDVKNALDKLSGTELNGRKIRLIEER 178

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1061.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXG5_ECTSI	9.160e-103	86.83	Arginine/serine-rich splicing factor 6 n=2 Tax=Ect...	[more]
A0A7S0Q5F1_9EUKA	8.830e-44	48.94	Hypothetical protein (Fragment) n=1 Tax=Coccolithu...	[more]
A0A7S0DYD6_9CRYP	1.960e-39	46.10	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A2C9KFU7_BIOGL	2.990e-39	42.54	Uncharacterized protein n=1 Tax=Biomphalaria glabr...	[more]
L1JS00_GUITC	3.510e-39	45.86	Uncharacterized protein n=2 Tax=Guillardia theta T...	[more]
A0A068RLW3_9FUNG	5.780e-39	44.97	Alternative splicing factor asf n=2 Tax=Lichtheimi...	[more]
A0A401NNI1_SCYTO	7.110e-39	41.85	Uncharacterized protein n=4 Tax=Scyliorhinus TaxID...	[more]
UPI001403BE55	2.200e-38	41.11	serine/arginine-rich splicing factor 5-like n=3 Ta...	[more]
UPI00065B6AAF	2.660e-38	39.47	serine/arginine-rich splicing factor 6 isoform X1 ...	[more]
A0A4W3K1A3_CALMI	4.890e-38	40.78	Uncharacterized protein n=2 Tax=Callorhinchus mili...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1061	contig	F-serratus_M_contig1061:106094..115124 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	310.1
Seed ortholog evalue	8.7e-82
Seed eggNOG ortholog	2880.D7FXG5
Preferred name	NPL3
KEGG ko	ko:K12893,ko:K12896,ko:K14651
KEGG Pathway	ko03022,ko03040,ko05168,ko05202,map03022,map03040,map05168,map05202
Hectar predicted targeting category	other localisation
GOs	GO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000993,GO:0001067,GO:0001069,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022411,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031369,GO:0031370,GO:0031503,GO:0031554,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0034243,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042886,GO:0043043,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0045292,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060567,GO:0065007,GO:0070063,GO:0070717,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904594,GO:1990904,GO:2000112,GO:2000113,GO:2000804,GO:2000805,GO:2001141
EggNOG free text desc.	RNA splicing
EggNOG OGs	COG0724@1,KOG0106@2759
Ec32 ortholog description	SR RNA splicing protein
Ec32 ortholog	Ec-07_003150.1
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03019,ko03021,ko03041
Exons	8
Model size	796
Cds size	681
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1061.610.1	prot_F-serratus_M_contig1061.610.1	Fucus serratus male	polypeptide	F-serratus_M_contig1061 106183..115098 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928895.4011128-UTR-F-serratus_M_contig1061:106093..106182	1622928895.4011128-UTR-F-serratus_M_contig1061:106093..106182	Fucus serratus male	UTR	F-serratus_M_contig1061 106094..106182 +
1690962619.7460103-UTR-F-serratus_M_contig1061:106093..106182	1690962619.7460103-UTR-F-serratus_M_contig1061:106093..106182	Fucus serratus male	UTR	F-serratus_M_contig1061 106094..106182 +
1622928895.5486007-UTR-F-serratus_M_contig1061:115098..115124	1622928895.5486007-UTR-F-serratus_M_contig1061:115098..115124	Fucus serratus male	UTR	F-serratus_M_contig1061 115099..115124 +
1690962619.841745-UTR-F-serratus_M_contig1061:115098..115124	1690962619.841745-UTR-F-serratus_M_contig1061:115098..115124	Fucus serratus male	UTR	F-serratus_M_contig1061 115099..115124 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1061:106094..115124+
coding sequence from alignment at F-serratus_M_contig1061:106094..115124+

protein sequence of mRNA_F-serratus_M_contig1061.610.1

>prot_F-serratus_M_contig1061.610.1 ID=prot_F-serratus_M_contig1061.610.1|Name=mRNA_F-serratus_M_contig1061.610.1|organism=Fucus serratus male|type=polypeptide|length=227bp
MTTRIYVGHLSPYTRDKDLDRAFGRYGRIEKIDVRMGFAFIEFDDRRDAE
EAVADMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGIDSHTS
WQDLKDFGRQAGQVLFSDVFFRHGRRWGVVEYLTREDMRTAIRQLDDTRL
GGKYIRVREERNMRGSRSRSRSRDRRSRSESRSPSRRHRSPSPDDRGRGK
GRRRDRGISRSRSPARHSHSRSRLSR*

mRNA from alignment at F-serratus_M_contig1061:106094..115124+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1061.610.1 ID=mRNA_F-serratus_M_contig1061.610.1|Name=mRNA_F-serratus_M_contig1061.610.1|organism=Fucus serratus male|type=mRNA|length=9031bp|location=Sequence derived from alignment at F-serratus_M_contig1061:106094..115124+ (Fucus serratus male)
TGGTAGCGCTTACATACACACTTTGCCTTATCTTCTCCTTGCTCAAGCCG
TTCGACTATCTTTCTCGTCCCCTGCTGAGTAAGAGAGATATGACGACCAG
AATCTACGTGGGACACCTTTCGCCGTGAGTTATCGTTATGTTTATCTTCG
TGCCTCAGCCGAGTATCGCGACCGTCTTCGTTTTTCCTTCCTCGCGTTTT
TCAGAGTCCAAAAGCAACGTCCAACTTTCGAAGACATGGCCCTAGAGGTT
CGCGCAGGTCGATACGAAACATAAGGTACTCCCCGCTTGGAATAGCGACC
TCAAGAGTGTCCTTGGTATCCATCGGTATTCGGTGTAAATTGTCCTTGAT
GTAGGCCGCACTGTAGCGGGTGTGAACCTTTCGATTAGGTGTGCGTTCGC
GCACTTGTCCAGCATAGTTTCAGATTTTTTTCCTCGGCAAACGTCAGATA
CAGAAATCAGATTACTAAACAAGTAAAGAACATTTATACTAAACTACTGT
AGATGCCATGACGTTTTTTCTCTGGTGTTACGTTCGTTTTGCTTTGTTTT
GCTTTGTTTTGCTCTGTTTTGCTTCGTTTTGCTTTGTTTTGCTCTGTTTT
GCTTCGTTTTTGTCTCTATGCTTTCGTTGAAGCCGCAGCCCTTCGTTCAA
TCGTCCTTCGAATGCAGGCGCCCCGGTAGCCCCACGTGTTTCTATTTTTG
GAGATGTCGCTTTTTTCGAGTATTTCTTGTACCATTTCCGCTTTCTCTTT
GTATGGAGAGTACGTCGTACGTTCTTTCCTTCCGAATGGTGTTTTCTACC
TTGTGACCACGGGCTGGGTTTTTTTACATCagcttatgtgAGAATTCAAT
CAATCAATCAAATACGTACTGTAGTGCACTGCTGTCGTACTTAGCCTGCA
CATCAGTTGTTGTTTTTGTAGTAGGTAGATTTCATTTTTTGAAATGAAGA
AAACAGTCCCCCGAAAACATCTTTACTTCAGTACCAACATAAAGTGAAAA
GGAAAAATAATAATTTACCCCAAAATTTTCTGAACACCCAACAGCACGGA
AACAGACAAAACCAGGCAGTAGTATGCAGCCTTTGACCCCGCCTAAACGT
TTTGACATTTCCTCCCCCTACGGGGGATGCTCAAAAAGTCTAGGTGCTGT
TCGGATTTTCTTTAAATACGTACAACCTTGCTGGTTTTTATGGATGTGTA
AGTACCCCTACAGCGATGTGTGTGTACGAGTATAGACAGTACATGTGATT
TGTGTCATCTTCTCGTCGACCGATCGGGCGTCAACCATGAACTATACACA
TATTTTCGTTGAAGCCGTGGCCCTTCGTTCAATCGTCCTTCGATATGCAG
GCGCCCTGATAGCCACACGAGTTTTTTTCCCCCCCGAGAGGTGTCGCTTT
TTCCGAGTATTTTTTGTACCATTTCGGCTTTCTCTTTGTATGGAGAGTAG
GTTCTTTCCTTCCGAATGTTTTTTTTTTTTTTTACCCTGTGACTACGGCT
GGATTTTTGACTTCAGCCGGTACTTTCAACATGCCCACTTTATATCAAAA
GTGGGTGTGGGCAAGAGATGCAGTTGGTCCATGGTGACCTGCTAAGTCAG
CACTCGTTCGGAACTACCTTGTGGTTTACTGGCCCTGTGCCGGCGAACTC
TCGGCAGTGAACGCCATCGGCACGCAACTGCGTGACCCGATAAACTCGGG
ACTGACCCGATGGCGTATGGCGGTTTTAAATAAATATATGGACGCCGCCG
CGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTAT
GGAGAATGAGCAGGCTGACGCGGGACGGGACTGGCGAATCCGTCTCGCGA
GACCAAATTCTCGGGCACGACCTATATGTGTGTGGCCATATACTGTATAC
GTAGATACATTCATACCCTGCTGAAAGTGCTGACCATACGTGCATACATA
CAAACCGGTACATACAGTACCCCGACTGTAATATGCGCGGTTCCCAATCC
GGTACGAAGGAATGCCACAAAGAGGTACGACGAAGGAAGGCAAACACCGA
CCGCTATCAATACCGACCGCATCATGGTGCCCACCCGCTATCATTACTCA
AACCCAAGTACCGACCGGTATGTAAGGGTTGGCTTGCTCGGAATTTCTCG
ACTTTTTTTTTCTTTTTAAATCTCACTTATTAATTATAGCCGATGGACCT
CATCATTACCATCCTGCCTGTGGTCACTAAGGATATTCCCATCTCTCCCC
GGTTCACGCCTTACAACTTTTTTTTATCGCGATGCAAGTTGAGCAATCTT
ACGACTCGTTAACCAATGGTTGAATGGAGCAGTACAAATCAACAATTAGT
TGACGAGAGGTGAGCCGGGGAGATACCATGAGACGGGAAGATCCTCAGTT
ACCACAGGTAGGATGTCAACGCTGCAATATTATTAGATGGGATTGATCGC
CCAGCGCGTTGAGGCCCTTTATCATCGGCCGCGCTGATTGGTCTGGACAA
AGAAAAGAAAGCGCTGATTGGTCTGGGGTTTACGACCCGGAATCTTGAGA
AAAGGTGACCAGAATGGCGACCAGGTCGTACTGCTGTAGACCTCCAAAGT
ACTGCTTCCAGGGCAGTTGCGATGCTACAACGCTGTTGCAATATACCAGG
TAGACTATTGCAGTCTGAACCCCAGAGGTGACCTGGTGTTTCAATGCTTC
GAGGGTCTACAGTCTGGTCGTACTCTGCTACTTTTTGCTACCATATATTT
TATAGACAGTTCAGATAATTCTGTATTTTCATAAACATTTGTTTTGGACA
TTACTAACTAGGTATAGCTCTAAGTGGCACAAACACACACACACTCATTG
ATCACCCCTCGGGAGGATCAATGCGAGTGGCATATAATGACTATGACAGG
GCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACAT
AGATCAAAATGGCGTTGTAAATCGAAATAAACGTTTCCAAATTGAATATC
GTACACTCGGAAAAATTGGAAGTCATTGCAAGTATAGATCTATTATGCCA
GAAGTTGGTGTAAAGGTTTGGAACAAAAGTAAACTATGATACGCCCCGAG
ACAGTTTGAACATCGTTTCGGGCTTTGGAACTCACAGGAATCTCACAGAC
AGAATATCCAGAGACCGCCTGACTCAGTAGATGTCAGTAGATCCCGGAGC
ACACCGCATTCGTGAAAAATGACGGTATTTCCTCCGAAGCATCATCCTGC
ACAGCTTGAGCTGACCTATCATCCTTGTTTTCCTTCGCTTTGACCAATGA
CAGGACTCTGTGAACCCAAAGGGGTTGCAATAGCAGGAGCATGTTTTCCA
AACTTTCCAAATTTTGGAAATAGCCAAACAGCGACCTCGAGGTGCTTATC
CATTTCCAAATTTTGAAACGTGGAAATTCGAAAAGTTTGGAAAATATTCC
AAACTAGTACCAGGTATTTTTTTTCGTGAGGGTTACAGTCACTTTTGATG
AATTTGGTACACGGGCAGCATGTTCAGACAATCTTCTCTGTAGCTTGTAA
CACAGATTTTAAAATACTACCAGCACTCCCAGTGAAAGCTGTAGTTTGTA
CACAAAGACACCGTCTTCTTGACGTGGATAAGTTTCCGATGTTCTCGGGT
GGTTCCGATGTTCTCGGGTGGTTGAACCTGCCAAGGATTTTGTGGCGACT
CGGATCTCTGTTGGTTTAGCCGCGGCCTTATTTTTACTATGATTGTGGCC
CGTTGACCTTCGTACCTCTTTGTGACCAAAAGCGGGACTGGTGCTTGATA
CGCCGGTACTTTTGACATGCCTGTCCACGTCATACCAATGGTAGGCGTGA
GAAAGAGAGGCGCATATTAATAAGTCTATGATGACCTGCCAAGGCAGGAC
TCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGACGGATTCTCG
GTAGTGAATGCCGTCGGTACGTAATTGCGTGACTTTATCAACTCGGGATT
AACCCGATGGCGTATGGTGGTTAGAAAAAATAAATGAACGCCGTCGCAGA
AATCGGGAGAAAGCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGCAT
GGAGATGAGCAGGCTGACGCGGGACGGGATTGCCGAACCCGTCTCGCGAG
ACCAAAATCTCAGGCGCGAACGAGGACAGGGAAATACATCTATTTTCCCT
GTTCAGCTGACCACGAGCAGGATTGGTAACCTTAGTCGGTTGATCCATAC
TTTTACTATATCATATGTGATGACCATACATTCATGCTAATAAAACACGA
TGAGAAAATTGTTTACGGTACCTTTTACTGCTGGATATTATAGCGCTAAC
CCAATAAATAGGCTACCTGTACTATGAAAGGCACGGGTGAGCCATTTTTT
TTTTGATGTAGTTCGTTCTTTCGCCTGGTGTATATTTCTTGAAAGTTTTC
TTTCTCGAGTGTCGGGTGCCGACGGTGTGCCATGGGACTGTCGCCTCGCC
ACGAATCGGCCACTGCGACCCCCTATGTTCTCGGGCGGTTCGCCGCACAG
CAAGCCTCTGAACCAGCTTCCGTCCCGAGACGGTCGACTTTGTCACACCA
GCTCGCCTCAGTGGGGTCCCAGAGATGTTGCTGCCGTCTGAGCATTACAG
ACGCCTTCTCGAGGACAAGCCGCCCCTGATCAAAAACCATAATATACACT
GTACACTGTAATTCAAACTACAGAAGATGAAGATTAGGCGCCAGCCCTTA
CGGCTGGTACTGCTGTATTGTAACGCTGGTTTTAACCTCGCCTCTAGCTC
TATATATTAATAGATGGTAATAGTTCGGCACGTGAAGACATCGGTTTGGT
AACGTAGCGTACGGGTGATTTTTCTTACGAATCTGTCGCGAAGGGTGATT
GATGAATCCGTTCGGTACCCCCCCCCCCCCCCCTGTCTCCCGCCTCCACT
GTGGATCATTCCCCGACATCCTTACGAACGTTAAGGTACACTCGCGACAA
GGACTTGGACCGAGCCTTCGGCAGATATGGACGAATCGAGGTGAGAGCGG
GTGCTTCGCCATGCTCGCCTGGACGATGAGATGTCGATGTCCACGCCATG
CCTCCATTGTCGTGCCAAGGAAGATTCCTTCTTCTACTTCAATCGCGCAG
AGTAAATACAGTAGTACTACCTTAGAGCAATGCTTACAAAATCCCGGTTT
TGCCTTGTTACAGTTTTACTGGGTTTGCCAAAAGTTTCTTCGGCTTGATC
GACCTGCGGGGTGTGGGGAAAACAGGACACCAGGTATAAGACACGCCGCT
CTATTAATATCAATGACTCGTTTGACGAACCGATGCACGCGACACCCTCT
AGCCATATCTTGCTTAAGTCAGGAAAAACCTCACCCATCCCCTAACCTAC
GACCCGGCGAAAGCAATATCCTCGACCGGAACTCCCCCGGTTGATGGGAG
GGGCGCAAAACCCGCGTCTGGTAACAAGTTGATGCGCTTTATCTATGTTT
GTCCTACTATGCTGTTATTGATGCAGTTTTTATAAAATTAGAAAAATATC
CCTCTCCATGATGTACTCCATTTTTTTTTTGCAAGTCTAACCTCCTTTAA
TTATGATGTACTTTTTTTATTCCCGTTTCCAGGCGTTGCCATATTTTTAG
TACGTACGAGTTCGAGGCATTGAAGATATTGATAGTACAACCTTACAACC
TTATGTATTGCCAGCAGCAGCACCGTAACATTGCGCCCCTCTACGCCCCA
TCTGCTTTATCGACGCTTTATTTATATTATATTTGTAGTCATGTCCATAA
AAATTTGCTTGTTTTCTGGAAATGTGTGTGAAAGAGAATGCGTGCGGGTG
TTTTTCTTTTGCCGTTGGTTTTTATTATTTTTTATTATTTATTTTATTTT
AGCCGTTGGTTTTTTGTCACTTGCCTTTAGTTTTCATATGTATCCTTCGA
AGTATATATATTTATCGGTGATTTTTCATCATTCGTTTTTTTGCTGTCGT
TGGCCGTGTCGTCAGAAAATCGATGTGAGAATGGGGTTCGCTTTTATCGA
GTTTGACGACAGGCGGGACGCTGAAGAAGCTGTAGCCGGTGAGTGATGTA
TCATATCGGCAAAAGGCTGTCAGTTGCCCGTATATATTGTCATCGAACGC
GAACTTTGAAAATAAATAAAACTGTGTTGGGTTCTGCGTTACAAAAGACG
TATAAGGAAGATTAGATTTGGGTTTTCGCCGTTTTTTTTAATGCTCTCGC
CCCTTTTTTTTTTAATATGTACCATGTACATATTTACGACGTCCAAGGGA
GATTATGTTTGCCCCCGTTTTTTTTTTTTATGTTTTAGCAAAAATTGAAT
ATAGTTTGTGCTTACCAGTATCTTGTTGCTGCTGTACGTGACCAAACTTT
CGTAGTTTTTTTTTGCCATGTTCACATTAACTGTTCCTGCTGCTGCTTTG
TCTGACAGTTTGTCGAGGGAAGCGATAACCATGGAATATCCCCCTGGATG
AGCGTTTTAGGCCCACAACCCTTGACGCTCGTGAGAGACGTCTCCTGTCC
TTGAGGGAAAAATGTAACGTCAAATCAAATTTAGAGCACGAACAGTCGTG
CGACCACAGACTTTAAAGACGTTGGCGTATGTGTTTTAAACGTTTCTCTT
CGATCGCGGATGCTGTAGATATGGACGGGCGTGAAATCGACGGAGCCCGC
ATCGTGGTCCAGCCCGGTCGAGGACACCGGCCCAACGGCCCCAAGTTTGC
CACCCGCCGCACGGAGCACCGCATCACCATCGAAGGGATCGACTCGCACA
CCAGCTGGCAGGACCTCAAGGTGCGCCCGCGAGACAAATATTTGAAACAG
CTCATCGATCGCATTTTATAGAGTGGCGCAAGGGTGTCTCGCCACGTTCA
GTTTTGCTGTATGGCCTTTTTTTTTTTTTCATTTACCCTTACCCTGCTGA
TGGCGTCCAGAGATAACTTCTAGTGGGGGCACTTGCCTTGCGCTGGCGCC
GTGTTGGGTCGGTATTTCAATGTCCGCGCCTAAGCGAGAGAGAGCAAGAG
AGTCTCTTTAGGTCTGACGGTCCTCGTCCACCCCCCCCCCCCCCAATCAA
ACGCCTATATATTTATGTAACCTCTCTGTAACCTCTCTCACCGCGTTGGG
TTTTTCCCGACTGCACCGATCGTTCTTCATACAGGACTTCGGTCGCCAGG
CAGGACAGGTGCTGTTCAGCGATGTCTTCTTCCGCCACGGCCGCCGCTGG
GGTGAGCGACACCCTATCGCCTGTCGTGTTTACTACCGCGCAGCATTTCG
CCTAGGTTTTCTCTTACTTGGCATTCTTCCAGCTCTTCTGTTCCCTTCCT
TTTATTTCTCTTCTTTCTTTTTGCCATGTCATGATGTCTCGCCGTGTGTT
TATGGACATTACATTCTTCCGCGTGCAGGCTGCAGCGGATTGCGCACTGC
CTTGGCTACACGTCAACGATCCTGCGCTTTGCATTCTGACTTATCATCAA
CAACGGCCACTTTCTACTGATCTCTCTTGTTTCGATCGTGTGCGCGCACC
GCCGTCGATGGCGCGGGTCGGGTGCACACGCGAATCGAGTGCAGACGGTG
GCCTTTCCCGTCCTGGAACGATCGCTGTTGCTCCTTACGCGAAACTCACT
TTTGTGTGTTCCCAACTGCCGTAGTGCCCCCGAAAATTTTGCCGCGCTCT
CTCTGTAGTGTCAATAATCCCTATGCCCCTTTTGTGTGGTGCGCTTTTCA
ACGCCTCCCAGGAGTGGTGGAGTACCTGACTCGTGAGGATATGCGAACGG
CGATCCGGCAGCTGGACGACACCCGTTTAGGTGGAAAGTATATCCGCGTG
AGAGAGGTGCGAGGCTCCCGGTGAATCTGTGGGAGGCGCTAGACGCATAC
ACACGCTTGTGTGATCTGGCTGGTTACCTCAAGCGCAAATGCGCGCGCGT
ATGACGTTGCAATGCTTCGCGGTGGTTTCGGCCCGCATGATGGGGGACTG
TGAGCCTTTGCTGCAGAGGCAGCAGTAGGTAGTCTGACGTCGTTGGGACA
TCGTACCTTATTTCGGTGGGACATCGTGTACCTTATTTTGGTATTGTACT
GAAAAGTAGGTTTGGTGACATCACACGGTTCCACCTTTTTATTGTCTTAA
GAGCTCGTATTGGTTCTGCTTTCAACCGGCTGCTCTGAAGAATAACTGGC
GCTCTCCACATTGCCTTCGCTCCCATCTCCCATCTCACGTGGGTTTGCAT
TACTTCCAGGAGCGCAATATGCGGGGCAGCCGTTCGCGCAGCCGCTCACG
AGACCGCCGGTCCCGCAGCGAGTCCCGGTCCCCGTCCCGCCGGCACCGCT
CTCCGAGTCCGGATGACAGGGGCAGGGGGAAAGGAAGAAGGCGTGACCGT
GGCATCAGCCGCAGCCGCTCGCCTGCCCGGCACAGGTACGTTTCGTTTCG
TTTCCGATGTACGTTTCGTTTCGTTTCCGATGTGCAGTAAATGGTCTGTC
CCGCGATGGGATGCCGTTGTTTGTCTTGCGGGGGCGGCACTACTACTATA
GAGTGTGTGTACGCTGTACATTATATTGGTCAGTACGATTGTGCTGGATT
GATGATTTCATCTGTGTTGCGGCAGGTTGTCACGGGGGGCAGCTCGTGGA
GAAGGGTTTCCTGTAACATTGGTTCAGGTGGCCGAAAGCGGATTTTCTCG
TGGCATTATTGGGGTGGAAAATCAATGCGCAAATCACATCGAGCACTCTC
GTCCTGTAGCGGTTGTGCGTTGGAACCCCGAATGCGGATGAAGAAAAATC
GGAACCAACGTATCTAAACCTTTTGGGCATCCACCTAACCAAAGGGGGAA
AAGTAACAAAACTGTCTAGTGGTGGCTGTCCTGTCCTCTCAATCACGCCT
TTCGTGCTCCCATCCCATCCCATCCCATCCCATCCCATCCTTCAAACCCT
GCAACCGTCTCGTTTACCCCAACACAGCCACAGCCGCAGCAGGCTTTCTC
GCTGAGACACCCCACAGCAGCAGCTTCCTCT

Coding sequence (CDS) from alignment at F-serratus_M_contig1061:106094..115124+

>mRNA_F-serratus_M_contig1061.610.1 ID=mRNA_F-serratus_M_contig1061.610.1|Name=mRNA_F-serratus_M_contig1061.610.1|organism=Fucus serratus male|type=CDS|length=1362bp|location=Sequence derived from alignment at F-serratus_M_contig1061:106094..115124+ (Fucus serratus male)
ATGACGACCAGAATCTACGTGGGACACCTTTCGCCATGACGACCAGAATC
TACGTGGGACACCTTTCGCCGTACACTCGCGACAAGGACTTGGACCGAGC
CTTCGGCAGATATGGACGAATCGAGGTACACTCGCGACAAGGACTTGGAC
CGAGCCTTCGGCAGATATGGACGAATCGAGAAAATCGATGTGAGAATGGG
GTTCGCTTTTATCGAGTTTGACGACAGGCGGGACGCTGAAGAAGCTGTAG
CCGAAAATCGATGTGAGAATGGGGTTCGCTTTTATCGAGTTTGACGACAG
GCGGGACGCTGAAGAAGCTGTAGCCGATATGGACGGGCGTGAAATCGACG
GAGCCCGCATCGTGGTCCAGCCCGGTCGAGGACACCGGCCCAACGGCCCC
AAGTTTGCCACCCGCCGCACGGAGCACCGCATCACCATCGAAGGGATCGA
CTCGCACACCAGCTGGCAGGACCTCAAGATATGGACGGGCGTGAAATCGA
CGGAGCCCGCATCGTGGTCCAGCCCGGTCGAGGACACCGGCCCAACGGCC
CCAAGTTTGCCACCCGCCGCACGGAGCACCGCATCACCATCGAAGGGATC
GACTCGCACACCAGCTGGCAGGACCTCAAGGACTTCGGTCGCCAGGCAGG
ACAGGTGCTGTTCAGCGATGTCTTCTTCCGCCACGGCCGCCGCTGGGGAC
TTCGGTCGCCAGGCAGGACAGGTGCTGTTCAGCGATGTCTTCTTCCGCCA
CGGCCGCCGCTGGGGAGTGGTGGAGTACCTGACTCGTGAGGATATGCGAA
CGGCGATCCGGCAGCTGGACGACACCCGTTTAGGTGGAAAGTATATCCGC
GTGAGAGAGGAGTGGTGGAGTACCTGACTCGTGAGGATATGCGAACGGCG
ATCCGGCAGCTGGACGACACCCGTTTAGGTGGAAAGTATATCCGCGTGAG
AGAGGAGCGCAATATGCGGGGCAGCCGTTCGCGCAGCCGCTCACGAGACC
GCCGGTCCCGCAGCGAGTCCCGGTCCCCGTCCCGCCGGCACCGCTCTCCG
AGTCCGGATGACAGGGGCAGGGGGAAAGGAAGAAGGCGTGACCGTGGCAT
CAGCCGCAGCCGCTCGCCTGCCCGGCACAGGAGCGCAATATGCGGGGCAG
CCGTTCGCGCAGCCGCTCACGAGACCGCCGGTCCCGCAGCGAGTCCCGGT
CCCCGTCCCGCCGGCACCGCTCTCCGAGTCCGGATGACAGGGGCAGGGGG
AAAGGAAGAAGGCGTGACCGTGGCATCAGCCGCAGCCGCTCGCCTGCCCG
GCACAGCCACAGCCGCAGCAGGCTTTCTCGCTGACCACAGCCGCAGCAGG
CTTTCTCGCTGA