mRNA_F-serratus_M_contig1061.606.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1061.606.1
Unique NamemRNA_F-serratus_M_contig1061.606.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1061.606.1 vs. uniprot
Match: A0A6H5L5P4_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.900e-23
Identity = 80/201 (39.80%), Postives = 101/201 (50.25%), Query Frame = 1 
Query:    1 VGQCVAERNRRSFLLFLVLLAVLSLWFARNM-LAFATGEDDICQ--GNAIGQSSQGGVVLCVLLRNVGGEAVGYALYAFVAGVLAAALAAQQCLLVGAGVTSLELRRSRAP------GQGDEPRLAEDLGKLPSYPRDPHGNVRTPRHRVILFP-----------------------------RASEFFGNWKIFLSGNEL 489
            VGQC+AERNRRSFL FL+LLA LS WF+R + +A ++GE   C+  G A  Q+    V+  +L  N GGE +G A+YA   G+LA ALAAQQ  LV AG+TSLELRR+R        G+G     + D  +   Y R   G  R P     L P                              A +  GNW  FL+G EL
Sbjct:    9 VGQCIAERNRRSFLGFLILLAGLSFWFSRRVVMALSSGETSACRDDGRACKQAVWPHVLRHLLRTNRGGEDLGVAIYALTTGLLATALAAQQIFLVSAGLTSLELRRARKSPLLSHAGRGRRGTSSAD--RSADYSRSWQGGRRFPAPGSSLAPPPSPSAAAEVVAHVGETQPRDPSPPARFVSARDVAGNWARFLTGTEL 207
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BLAST of mRNA_F-serratus_M_contig1061.606.1 vs. uniprot
Match: D7FXG9_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.690e-14
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 VGQCVAERNRRSFLLFLVLLAVLSLWFARN-MLAFATGEDDIC--QGNAIGQSSQGGVVLCVLLRNVGGEAVGYALYAFVAGVLAAALAAQQ---CLLVGAGV 291
            VGQCVAERNRRSFL FL+LLA +S WF+R  ++A ++GE   C   G A  Q+    V+  +L  N GGE VG A+Y   AG+LA ALAAQ+   C   G+GV
Sbjct:   43 VGQCVAERNRRSFLGFLILLAGMSFWFSRREVMALSSGETGACPDDGRACKQAVWPHVLRHLLRTNRGGEDVGVAIYVLTAGLLATALAAQEHFTCTSRGSGV 145
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1061.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5P4_9PHAE6.900e-2339.80Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FXG9_ECTSI1.690e-1451.46Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1061contigF-serratus_M_contig1061:80083..81428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-07_003210.1
Exons3
Model size825
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1061.606.1prot_F-serratus_M_contig1061.606.1Fucus serratus malepolypeptideF-serratus_M_contig1061 80311..81338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.718463-UTR-F-serratus_M_contig1061:80082..803101622928894.718463-UTR-F-serratus_M_contig1061:80082..80310Fucus serratus maleUTRF-serratus_M_contig1061 80083..80310 -
1690962619.4334943-UTR-F-serratus_M_contig1061:80082..803101690962619.4334943-UTR-F-serratus_M_contig1061:80082..80310Fucus serratus maleUTRF-serratus_M_contig1061 80083..80310 -
1622928894.776246-UTR-F-serratus_M_contig1061:81338..814281622928894.776246-UTR-F-serratus_M_contig1061:81338..81428Fucus serratus maleUTRF-serratus_M_contig1061 81339..81428 -
1690962619.4709737-UTR-F-serratus_M_contig1061:81338..814281690962619.4709737-UTR-F-serratus_M_contig1061:81338..81428Fucus serratus maleUTRF-serratus_M_contig1061 81339..81428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.7295947-CDS-F-serratus_M_contig1061:80310..806431622928894.7295947-CDS-F-serratus_M_contig1061:80310..80643Fucus serratus maleCDSF-serratus_M_contig1061 80311..80643 -
1690962619.4432483-CDS-F-serratus_M_contig1061:80310..806431690962619.4432483-CDS-F-serratus_M_contig1061:80310..80643Fucus serratus maleCDSF-serratus_M_contig1061 80311..80643 -
1622928894.7450085-CDS-F-serratus_M_contig1061:80908..810251622928894.7450085-CDS-F-serratus_M_contig1061:80908..81025Fucus serratus maleCDSF-serratus_M_contig1061 80909..81025 -
1690962619.4523804-CDS-F-serratus_M_contig1061:80908..810251690962619.4523804-CDS-F-serratus_M_contig1061:80908..81025Fucus serratus maleCDSF-serratus_M_contig1061 80909..81025 -
1622928894.762419-CDS-F-serratus_M_contig1061:81281..813381622928894.762419-CDS-F-serratus_M_contig1061:81281..81338Fucus serratus maleCDSF-serratus_M_contig1061 81282..81338 -
1690962619.461469-CDS-F-serratus_M_contig1061:81281..813381690962619.461469-CDS-F-serratus_M_contig1061:81281..81338Fucus serratus maleCDSF-serratus_M_contig1061 81282..81338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1061.606.1

>prot_F-serratus_M_contig1061.606.1 ID=prot_F-serratus_M_contig1061.606.1|Name=mRNA_F-serratus_M_contig1061.606.1|organism=Fucus serratus male|type=polypeptide|length=169bp
MLAFATGEDDICQGNAIGQSSQGGVVLCVLLRNVGGEAVGYALYAFVAGV
LAAALAAQQCLLVGAGVTSLELRRSRAPGQGDEPRLAEDLGKLPSYPRDP
HGNVRTPRHRVILFPRASEFFGNWKIFLSGNELSRRPLDLCSPIDVNRSR
PAVAESNRRRSSSRGKLS*
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mRNA from alignment at F-serratus_M_contig1061:80083..81428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1061.606.1 ID=mRNA_F-serratus_M_contig1061.606.1|Name=mRNA_F-serratus_M_contig1061.606.1|organism=Fucus serratus male|type=mRNA|length=1346bp|location=Sequence derived from alignment at F-serratus_M_contig1061:80083..81428- (Fucus serratus male)
GTGGGGCAGTGCGTTGCAGAGCGCAACCGCCGGTCATTTTTATTGTTCCT
CGTTTTGCTCGCGGTACTTTCGCTCTGGTTCGCCAGAAATATGCTTGCGT
TCGCGACGGGGGAGGACGACATCTGCCAAGGGAACGCAATTGGGCAGGTG
CTGGTGGCGGGGGGGGGGGGGGGGGTATGCAACGGCGTGTCTTTGCTTTT
GTCGAACTTTCTCTTGTCTCTCTCTAATTGGCCTGCGTCTTTTGCACTAG
ACTGTAGAATGGTTTCGTTAATACTTTCAAATCGAAGGAATCTGCGCTTC
CCCCTGCCCCACGACGCAACCGGATTGGCGTCCTCGTCTCGTAAGTACGT
GCTGTACATAATTTCTCCTCTGGACGTGGACCCGTGCCCCCGTTTTCCTA
CAGTCTTCGCAGGGTGGGGTTGTCCTCTGCGTACTGTTGCGGAACGTCGG
CGGCGAAGCTGTGGGATACGCTCTCTACGCCTTCGTCGCAGGAGTTCTGG
CTGCCGCCCTCGCCGCTCAGGTACCAAGTAGAAGAACCGAGCAGGATTGA
TCACTCTCCACAAAGCCACGCCATTTCGCTCTCGGTCGCTCCGATGAGGG
CGGGGACAGATTGGATCCTTCTCCCCACTCCCCCCCCCCCCCCCCCCCCC
CCAAAAAAGGAAGGAAACCTATCGAACGCCTTTCTCCGTTGGGTGTAGGA
CGTCTTTCCAGTGTATATTACGCTTTCGATGTAATCTGCGTGCCTGCATC
GCCCCTTTCCATCCGTTGCCTTTCTTGTTTCTCAGCAATGCCTCCTCGTG
GGTGCTGGTGTAACGTCGCTAGAGCTCCGCAGGAGCAGAGCACCGGGGCA
AGGAGACGAGCCTCGATTGGCGGAGGACTTAGGCAAGCTGCCGAGCTACC
CGCGTGACCCCCACGGTAATGTCCGGACGCCACGCCACCGCGTAATACTT
TTCCCTCGGGCTAGCGAGTTTTTCGGTAACTGGAAAATATTCCTCTCGGG
CAACGAGTTGTCCAGAAGACCGCTAGACCTTTGTTCTCCTATAGATGTTA
ATAGGAGTCGACCAGCCGTTGCTGAGAGCAACCGCCGTAGAAGTTCGTCT
CGGGGTAAGCTCTCGTAAAGTGTCTGGGTTCGCCATTTGTTTTCTGTTGG
GGTAGCTCAAAATCTTTTGAGTACCTTCAGCGATCAACTGCGCAATCGAC
GTTGCATGGTAAAATAATGGATCGTACGTCCTCCGAGCGTTGCGCTCGGG
CGCGGTCGAAGGGCAGATAGCAGGGGTAGGCACCATCACAAAAATAACTA
GACGGAGATCTCAAGGGATTCAGGGGGTCGTGGTTGGAGGTCAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1061:80083..81428-

>mRNA_F-serratus_M_contig1061.606.1 ID=mRNA_F-serratus_M_contig1061.606.1|Name=mRNA_F-serratus_M_contig1061.606.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig1061:80083..81428- (Fucus serratus male)
ATGCTTGCGTTCGCGACGGGGGAGGACGACATCTGCCAAGGGAACGCAAT
TGGGCAGATGCTTGCGTTCGCGACGGGGGAGGACGACATCTGCCAAGGGA
ACGCAATTGGGCAGTCTTCGCAGGGTGGGGTTGTCCTCTGCGTACTGTTG
CGGAACGTCGGCGGCGAAGCTGTGGGATACGCTCTCTACGCCTTCGTCGC
AGGAGTTCTGGCTGCCGCCCTCGCCGCTCAGTCTTCGCAGGGTGGGGTTG
TCCTCTGCGTACTGTTGCGGAACGTCGGCGGCGAAGCTGTGGGATACGCT
CTCTACGCCTTCGTCGCAGGAGTTCTGGCTGCCGCCCTCGCCGCTCAGCA
ATGCCTCCTCGTGGGTGCTGGTGTAACGTCGCTAGAGCTCCGCAGGAGCA
GAGCACCGGGGCAAGGAGACGAGCCTCGATTGGCGGAGGACTTAGGCAAG
CTGCCGAGCTACCCGCGTGACCCCCACGGTAATGTCCGGACGCCACGCCA
CCGCGTAATACTTTTCCCTCGGGCTAGCGAGTTTTTCGGTAACTGGAAAA
TATTCCTCTCGGGCAACGAGTTGTCCAGAAGACCGCTAGACCTTTGTTCT
CCTATAGATGTTAATAGGAGTCGACCAGCCGTTGCTGAGAGCAACCGCCG
TAGAAGTTCGTCTCGGGGTAAGCTCTCGTAACAATGCCTCCTCGTGGGTG
CTGGTGTAACGTCGCTAGAGCTCCGCAGGAGCAGAGCACCGGGGCAAGGA
GACGAGCCTCGATTGGCGGAGGACTTAGGCAAGCTGCCGAGCTACCCGCG
TGACCCCCACGGTAATGTCCGGACGCCACGCCACCGCGTAATACTTTTCC
CTCGGGCTAGCGAGTTTTTCGGTAACTGGAAAATATTCCTCTCGGGCAAC
GAGTTGTCCAGAAGACCGCTAGACCTTTGTTCTCCTATAGATGTTAATAG
GAGTCGACCAGCCGTTGCTGAGAGCAACCGCCGTAGAAGTTCGTCTCGGG
GTAAGCTCTCGTAA
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