mRNA_F-serratus_M_contig1061.604.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1061.604.1
Unique NamemRNA_F-serratus_M_contig1061.604.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1061.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1061contigF-serratus_M_contig1061:43536..44179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1061.604.1prot_F-serratus_M_contig1061.604.1Fucus serratus malepolypeptideF-serratus_M_contig1061 43598..43939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.862283-UTR-F-serratus_M_contig1061:43535..435971622928894.862283-UTR-F-serratus_M_contig1061:43535..43597Fucus serratus maleUTRF-serratus_M_contig1061 43536..43597 +
1690962619.4935017-UTR-F-serratus_M_contig1061:43535..435971690962619.4935017-UTR-F-serratus_M_contig1061:43535..43597Fucus serratus maleUTRF-serratus_M_contig1061 43536..43597 +
1622928894.88776-UTR-F-serratus_M_contig1061:43939..441791622928894.88776-UTR-F-serratus_M_contig1061:43939..44179Fucus serratus maleUTRF-serratus_M_contig1061 43940..44179 +
1690962619.528748-UTR-F-serratus_M_contig1061:43939..441791690962619.528748-UTR-F-serratus_M_contig1061:43939..44179Fucus serratus maleUTRF-serratus_M_contig1061 43940..44179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.874019-CDS-F-serratus_M_contig1061:43597..439391622928894.874019-CDS-F-serratus_M_contig1061:43597..43939Fucus serratus maleCDSF-serratus_M_contig1061 43598..43939 +
1690962619.5131567-CDS-F-serratus_M_contig1061:43597..439391690962619.5131567-CDS-F-serratus_M_contig1061:43597..43939Fucus serratus maleCDSF-serratus_M_contig1061 43598..43939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1061.604.1

>prot_F-serratus_M_contig1061.604.1 ID=prot_F-serratus_M_contig1061.604.1|Name=mRNA_F-serratus_M_contig1061.604.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MGSTQPSQESDRGTRRGTVVGAGISLPSRVAMVTELTPEEAVGEMTAGGP
VTGTTGTGVLTFLEGAASGGQPFSTLEAPIPPRRYVGAPPAPAASLGPAA
CDEKARAAAPSAR*
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mRNA from alignment at F-serratus_M_contig1061:43536..44179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1061.604.1 ID=mRNA_F-serratus_M_contig1061.604.1|Name=mRNA_F-serratus_M_contig1061.604.1|organism=Fucus serratus male|type=mRNA|length=644bp|location=Sequence derived from alignment at F-serratus_M_contig1061:43536..44179+ (Fucus serratus male)
CCGGTGCTCTGTGACGAGAGTCGTCCGATACAGCCTCCGACGCAACGGGG
GCGAGACCACGCATGGGCTCTACCCAACCGTCACAAGAGAGCGATCGAGG
GACGCGTCGAGGCACAGTAGTCGGTGCCGGTATATCTCTACCATCCAGGG
TAGCGATGGTGACGGAGTTGACCCCCGAGGAAGCGGTCGGAGAGATGACG
GCGGGCGGTCCAGTAACCGGAACGACGGGGACGGGGGTTTTGACCTTCCT
TGAGGGAGCCGCAAGCGGGGGCCAGCCATTTTCGACGCTCGAGGCACCCA
TCCCTCCGCGCCGATACGTTGGTGCCCCTCCTGCTCCTGCAGCTTCCCTC
GGCCCAGCCGCTTGTGACGAGAAAGCTCGCGCCGCGGCACCGTCAGCGCG
CTGAAAAGAATGGATGGGAATCGCACCGCTGAGCTGGGCGGTTGTAACAC
GGCTCCCATGAACCCGGCTCGGAACACTGTTTTCGCTGATGTTAACGGCA
CGAAGACTCTCCTCCAAGCCGCGGCTTGCACTGGAGGCAATTCCCTCACT
GCTGCTGGGAGTAGCCATACCGGGGGGAACGGTGGCGGCGGCGAGAGTCG
TCCAGGGTCGCGCCTGCGGCACGTTGATTCCCCCTCCAACTTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1061:43536..44179+

>mRNA_F-serratus_M_contig1061.604.1 ID=mRNA_F-serratus_M_contig1061.604.1|Name=mRNA_F-serratus_M_contig1061.604.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1061:43536..44179+ (Fucus serratus male)
ATGGGCTCTACCCAACCGTCACAAGAGAGCGATCGAGGGACGCGTCGAGG
CACAGTAGTCGGTGCCGGTATATCTCTACCATCCAGGGTAGCGATGGTGA
CGGAGTTGACCCCCGAGGAAGCGGTCGGAGAGATGACGGCGGGCGGTCCA
GTAACCGGAACGACGGGGACGGGGGTTTTGACCTTCCTTGAGGGAGCCGC
AAGCGGGGGCCAGCCATTTTCGACGCTCGAGGCACCCATCCCTCCGCGCC
GATACGTTGGTGCCCCTCCTGCTCCTGCAGCTTCCCTCGGCCCAGCCGCT
TGTGACGAGAAAGCTCGCGCCGCGGCACCGTCAGCGCGCTGAATGGGCTC
TACCCAACCGTCACAAGAGAGCGATCGAGGGACGCGTCGAGGCACAGTAG
TCGGTGCCGGTATATCTCTACCATCCAGGGTAGCGATGGTGACGGAGTTG
ACCCCCGAGGAAGCGGTCGGAGAGATGACGGCGGGCGGTCCAGTAACCGG
AACGACGGGGACGGGGGTTTTGACCTTCCTTGAGGGAGCCGCAAGCGGGG
GCCAGCCATTTTCGACGCTCGAGGCACCCATCCCTCCGCGCCGATACGTT
GGTGCCCCTCCTGCTCCTGCAGCTTCCCTCGGCCCAGCCGCTTGTGACGA
GAAAGCTCGCGCCGCGGCACCGTCAGCGCGCTGA
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