mRNA_F-serratus_M_contig1061.602.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1061.602.1
Unique NamemRNA_F-serratus_M_contig1061.602.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1061.602.1 vs. uniprot
Match: D7FXG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.510e-11
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:  313 EADWPTNLRNSVGIVTDLVVPYHTEVAAVKGRTEAGRKDSAPRHAGWFKMPDSDSDEVMEGVDEE-----EREMLAAMEEIYERGRQQLREHARRHSREAKQRSSDSWPASRTPAHQN 651
            EA W   L++SVG+VTDLV+P        +GR  AG               D     + EG +EE     EREM AA+E IYE+GR+QL+ HA  H +EA+QR++D+W ASRTP  Q+
Sbjct:  212 EARWAEELKSSVGVVTDLVLPC-------QGRDGAG--------------VDGVGIAIEEGGEEEXXXEDEREMAAALEAIYEKGREQLKRHAEVHGKEARQRATDAWLASRTPQQQS 308
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BLAST of mRNA_F-serratus_M_contig1061.602.1 vs. uniprot
Match: A0A6H5L4K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.450e-11
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 1 
Query:  313 EADWPTNLRNSVGIVTDLVVPYHTEVAAVKGRTEAGRKDSAPRHAGWFKMPDSDSDEVMEGVDEEEREMLAAMEEIYERGRQQLREHARRHSREAKQRSSDSWPASRTPAHQN 651
            EA W   L++SVG+VTDLV+P        +GR  AG             +   +  E  EG  E+EREM AA+E IYE+GR+QL  HA  H +EA+QR++D+W ASRTP  QN
Sbjct:  551 EARWAEELKSSVGVVTDLVLPC-------QGRDGAG--------VDGVGIAIEEVGEEGEGH-EDEREMAAALEAIYEKGREQLERHAEVHGKEARQRATDAWLASRTPQQQN 647
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1061.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXG8_ECTSI5.510e-1143.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4K7_9PHAE8.450e-1145.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1061contigF-serratus_M_contig1061:39757..41805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_003200.1
Exons2
Model size1790
Cds size675
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1061.602.1prot_F-serratus_M_contig1061.602.1Fucus serratus malepolypeptideF-serratus_M_contig1061 40870..41805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.9905317-UTR-F-serratus_M_contig1061:39756..408691622928894.9905317-UTR-F-serratus_M_contig1061:39756..40869Fucus serratus maleUTRF-serratus_M_contig1061 39757..40869 -
1690962619.5486336-UTR-F-serratus_M_contig1061:39756..408691690962619.5486336-UTR-F-serratus_M_contig1061:39756..40869Fucus serratus maleUTRF-serratus_M_contig1061 39757..40869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.0290632-CDS-F-serratus_M_contig1061:40869..410101622928895.0290632-CDS-F-serratus_M_contig1061:40869..41010Fucus serratus maleCDSF-serratus_M_contig1061 40870..41010 -
1690962619.5583723-CDS-F-serratus_M_contig1061:40869..410101690962619.5583723-CDS-F-serratus_M_contig1061:40869..41010Fucus serratus maleCDSF-serratus_M_contig1061 40870..41010 -
1622928895.0480857-CDS-F-serratus_M_contig1061:41271..418051622928895.0480857-CDS-F-serratus_M_contig1061:41271..41805Fucus serratus maleCDSF-serratus_M_contig1061 41272..41805 -
1690962619.566353-CDS-F-serratus_M_contig1061:41271..418051690962619.566353-CDS-F-serratus_M_contig1061:41271..41805Fucus serratus maleCDSF-serratus_M_contig1061 41272..41805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1061.602.1

>prot_F-serratus_M_contig1061.602.1 ID=prot_F-serratus_M_contig1061.602.1|Name=mRNA_F-serratus_M_contig1061.602.1|organism=Fucus serratus male|type=polypeptide|length=225bp
VDRIKGGLGVKQVDGWGPRIDTGPVTGGWDYLDGVCTHSESCTGTISSVE
RQEGVSGAGSCTMSSCSEETGPWVDGDGAGSANESRTGSRAESTVSASDA
TDEAEADWPTNLRNSVGIVTDLVVPYHTEVAAVKGRTEAGRKDSAPRHAG
WFKMPDSDSDEVMEGVDEEEREMLAAMEEIYERGRQQLREHARRHSREAK
QRSSDSWPASRTPAHQNARRRPQR*
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mRNA from alignment at F-serratus_M_contig1061:39757..41805-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1061.602.1 ID=mRNA_F-serratus_M_contig1061.602.1|Name=mRNA_F-serratus_M_contig1061.602.1|organism=Fucus serratus male|type=mRNA|length=2049bp|location=Sequence derived from alignment at F-serratus_M_contig1061:39757..41805- (Fucus serratus male)
GTAGACAGGATAAAGGGTGGACTGGGCGTGAAGCAGGTCGACGGCTGGGG
GCCGCGAATCGACACTGGTCCCGTAACGGGTGGCTGGGACTACCTCGATG
GTGTGTGCACGCACAGCGAGAGCTGCACGGGCACCATCTCGAGCGTAGAG
CGTCAAGAAGGCGTCTCGGGCGCGGGGTCATGTACTATGTCTTCTTGCTC
CGAGGAGACGGGGCCGTGGGTTGATGGAGATGGCGCGGGCAGTGCGAACG
AGAGCAGGACTGGCAGCAGAGCTGAAAGCACCGTTAGTGCCAGCGACGCC
ACGGACGAGGCGGAAGCGGACTGGCCAACCAATTTGCGGAACAGCGTCGG
GATCGTGACGGATCTCGTTGTGCCTTACCACACGGAGGTTGCCGCTGTCA
AAGGCCGCACGGAGGCCGGGAGAAAAGACTCCGCGCCGAGGCACGCGGGA
TGGTTTAAAATGCCGGACTCGGATTCGGATGAAGTCATGGAAGGCGTTGA
TGAAGAAGAGCGAGAGATGCTCGCTGCAATGGAGGTGATCTGGGTGGTAT
TTTCTTGTCCGAAGCATTTATTCAGACCAGGAACGAAACGCCCTCTCTAT
GCAGGACGTAATTTTGGCTTTTTCCACAGTTATTTGGCATGACACGGTAT
GTGTGTTTTGAAATTTATGCCGAAGGGGTGATCTCGAGGTGATTCAAAAT
TATTGACTCGATCCCTTTCCTCTCCTCGGCGGGCCGCCCCCCCCCCCCCC
CGCGCGTGCACGTCCCTCTTTCGCCGTTTGACCCTCTATGAACAGGAAAT
TTACGAACGAGGTAGGCAGCAGCTTAGGGAACACGCGAGGCGTCACTCGC
GAGAAGCGAAGCAACGATCTTCGGACTCCTGGCCGGCATCACGCACACCA
GCGCACCAGAACGCCCGCAGGCGCCCGCAGCGATGAATCCAGCAGCCGTG
AGGGTACGAAATCGAGGTTGGCTTCTGAATTTGTACGCGCTTTCATGTGT
TATATGTGTGTGCGACAGTTCCACCCTCGATCGTCTCCGCCACGCGTGGG
TCGCCTGACGTATAAAAGCGCAACCGCGATGACTGCCTCCTGGGCGTTGT
TTTGTCAAAGGTTTGGAGGGAAAAGGTGGGGAATGGAGAATTGGGGTGTG
AAGCATGGCATGAAGCATGGTATGAACTGCCGAGAGAGGAGGTTTGTTGA
GCGAGCTGGGTTCGTTCGTGCGCGCGCTCTCTCCCGGAGCGCGAAAGGAG
AAGCGCGGGTGCATGTCGTGGTCCATTTTCAACGGAACGATCTGAAGAAG
GTGCGGAACGGCGTGTGTGTCCGGAGGTTTTGTTAAGTCGTTGTTGTTCG
CGCCCCGTCACTTCCCCGTCTCGCGTTTGCGCTCTTCGGCCGTGGACGTT
GGAGTGCTTGGGAACGATCCCTGGTTCTGGGTGGGGCTCTGGGGGTGTTG
TCTCGAGAAAAAATCTGGAAATTTTATCTGTCTTGTCTCAAATCTCTTTT
GCTGCCCTGGGTTTTGTTGTACCTAATGGGGGTACCTAATGGGGGAGGCG
TGTGGGTGTGTGAATGTCACATACAGTAGACTCGATAAAAGGGTGTGGAA
CAAAAACAAAAGAGAAAGCGGGGAGGGTGTACGGACGAGCGATCGGGTGC
GTGATCGACGGCGCGAACGACTTCCCGAATAGCGGTAGTATGATAGAGTG
TGCATGTACAGTAGCATCCGGTCGTTTTTCTCTTAAAAGGAGCGTTACCA
GAGGTTTGCAACAGTGTCGATCTCCAGGGTTCAGAGTCACAGGCAAGCTT
TTGGGCATGGTCGGGGAGGAAGGTAAGAGTTCTCATCAAAAGAATCGTTT
CTGTTTCTGTCATGTCACGGTACGCCATGTCTTTGGTGTGGGGGTGTAGG
AGTAAGTGTTGAATGAGATTCCTCGGTTGTCTTGTCTTCCTGCGTGTACC
CTGTGATGTTGTGGACATGTGGAGCGTCCACTTCATAGTGTAGTATCTTT
CCGAGGGTGTTGGCATTTGTGCGTCATGGATGTGCGTGGTGTGTTGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1061:39757..41805-

>mRNA_F-serratus_M_contig1061.602.1 ID=mRNA_F-serratus_M_contig1061.602.1|Name=mRNA_F-serratus_M_contig1061.602.1|organism=Fucus serratus male|type=CDS|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig1061:39757..41805- (Fucus serratus male)
GTAGACAGGATAAAGGGTGGACTGGGCGTGAAGCAGGTCGACGGCTGGGG
GCCGCGAATCGACACTGGTCCCGTAACGGGTGGCTGGGACTACCTCGATG
GTGTGTGCACGCACAGCGAGAGCTGCACGGGCACCATCTCGAGCGTAGAG
CGTCAAGAAGGCGTCTCGGGCGCGGGGTCATGTACTATGTCTTCTTGCTC
CGAGGAGACGGGGCCGTGGGTTGATGGAGATGGCGCGGGCAGTGCGAACG
AGAGCAGGACTGGCAGCAGAGCTGAAAGCACCGTTAGTGCCAGCGACGCC
ACGGACGAGGCGGAAGCGGACTGGCCAACCAATTTGCGGAACAGCGTCGG
GATCGTGACGGATCTCGTTGTGCCTTACCACACGGAGGTTGCCGCTGTCA
AAGGCCGCACGGAGGCCGGGAGAAAAGACTCCGCGCCGAGGCACGCGGGA
TGGTTTAAAATGCCGGACTCGGATTCGGATGAAGTCATGGAAGGCGTTGA
TGAAGAAGAGCGAGAGATGCTCGCTGCAATGGAGGTAGACAGGATAAAGG
GTGGACTGGGCGTGAAGCAGGTCGACGGCTGGGGGCCGCGAATCGACACT
GGTCCCGTAACGGGTGGCTGGGACTACCTCGATGGTGTGTGCACGCACAG
CGAGAGCTGCACGGGCACCATCTCGAGCGTAGAGCGTCAAGAAGGCGTCT
CGGGCGCGGGGTCATGTACTATGTCTTCTTGCTCCGAGGAGACGGGGCCG
TGGGTTGATGGAGATGGCGCGGGCAGTGCGAACGAGAGCAGGACTGGCAG
CAGAGCTGAAAGCACCGTTAGTGCCAGCGACGCCACGGACGAGGCGGAAG
CGGACTGGCCAACCAATTTGCGGAACAGCGTCGGGATCGTGACGGATCTC
GTTGTGCCTTACCACACGGAGGTTGCCGCTGTCAAAGGCCGCACGGAGGC
CGGGAGAAAAGACTCCGCGCCGAGGCACGCGGGATGGTTTAAAATGCCGG
ACTCGGATTCGGATGAAGTCATGGAAGGCGTTGATGAAGAAGAGCGAGAG
ATGCTCGCTGCAATGGAGGAAATTTACGAACGAGGTAGGCAGCAGCTTAG
GGAACACGCGAGGCGTCACTCGCGAGAAGCGAAGCAACGATCTTCGGACT
CCTGGCCGGCATCACGCACACCAGCGCACCAGAACGCCCGCAGGCGCCCG
CAGCGATGAGAAATTTACGAACGAGGTAGGCAGCAGCTTAGGGAACACGC
GAGGCGTCACTCGCGAGAAGCGAAGCAACGATCTTCGGACTCCTGGCCGG
CATCACGCACACCAGCGCACCAGAACGCCCGCAGGCGCCCGCAGCGATGA
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