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Homology
BLAST of mRNA_F-serratus_M_contig106.595.1 vs. uniprot
Match: A0A552UIL9_9SPHN (DUF2237 domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A552UIL9_9SPHN) HSP 1 Score: 125 bits (314), Expect = 1.030e-34 Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 40 LNVLGKPLQSCSLPGGPTTGWRRDGFCSTDDHDRGQHCVCSEVTDDFLEYTKAQGNDLSTPRNPY-FPGLKPGDRWCLCSSRWLQAQRAGRAP 315
+NVLG+PLQSCS P TGW R+G C T +DRG H VC+EVT++FL ++K+ GNDLSTPR + FPGLKPGDRWCLC+ RW +A+ AG AP
Sbjct: 1 MNVLGRPLQSCSTD--PMTGWTRNGCCETGANDRGVHTVCAEVTEEFLTFSKSVGNDLSTPRPEFNFPGLKPGDRWCLCAPRWEEARIAGFAP 91
BLAST of mRNA_F-serratus_M_contig106.595.1 vs. uniprot
Match: A0A8J6IHM9_9PROT (DUF2237 domain-containing protein n=1 Tax=Euryhalocaulis sp. TaxID=2744307 RepID=A0A8J6IHM9_9PROT) HSP 1 Score: 125 bits (315), Expect = 1.040e-34 Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 37 ALNVLGKPLQSCSLPGGPTTGWRRDGFCSTDDHDRGQHCVCSEVTDDFLEYTKAQGNDLSTPRNPY-FPGLKPGDRWCLCSSRWLQAQRAGRAPR 318
A NVLG PL CS P TG+ RDG C+T DRG H VC+E+TDDFLE++KAQGNDLSTPR + FPGLK GDRWCLC++RW A AG+APR
Sbjct: 8 ARNVLGGPLDDCSHD--PLTGFFRDGCCNTGPMDRGVHTVCAELTDDFLEFSKAQGNDLSTPRPEFEFPGLKDGDRWCLCAARWKDAYEAGKAPR 100
BLAST of mRNA_F-serratus_M_contig106.595.1 vs. uniprot
Match: A0A257EQT4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium PA4 TaxID=2015572 RepID=A0A257EQT4_9PROT) HSP 1 Score: 125 bits (314), Expect = 1.130e-34 Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1
Query: 37 ALNVLGKPLQSCSLPGGPTTGWRRDGFCSTDDHDRGQHCVCSEVTDDFLEYTKAQGNDLSTPRNPY-FPGLKPGDRWCLCSSRWLQAQRAGRAP 315
ALN+LG PL CS P TGW RDG C+TD D+G+H VC+ VT+DFL +++A GNDLS+PR Y FPGLKPGDRWCLC++RW +A++AG AP
Sbjct: 3 ALNILGTPLAICSTD--PMTGWYRDGCCNTDAKDQGRHVVCAIVTEDFLAFSRAVGNDLSSPRPEYQFPGLKPGDRWCLCAARWEEARQAGFAP 94
BLAST of mRNA_F-serratus_M_contig106.595.1 vs. uniprot
Match: A0A2D5WZC3_9PROT (Uncharacterized protein n=1 Tax=Pelagibacteraceae bacterium TaxID=2026775 RepID=A0A2D5WZC3_9PROT) HSP 1 Score: 125 bits (314), Expect = 1.310e-34 Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 37 ALNVLGKPLQSCSLPGGPTTGWRRDGFCSTDDHDRGQHCVCSEVTDDFLEYTKAQGNDLSTPRNPY-FPGLKPGDRWCLCSSRWLQAQRAGRAPR 318
ALN+ G+ +++C P TGWRRDG+C+TDD D G H VC EVT+ FL+++K +GNDLSTPR + FPGLK GDRWCLC+ RW +A AG APR
Sbjct: 5 ALNIFGEEMEACCFD--PLTGWRRDGYCNTDDFDHGSHVVCCEVTEAFLKFSKERGNDLSTPRPEFNFPGLKEGDRWCLCAMRWQEAFEAGVAPR 97
BLAST of mRNA_F-serratus_M_contig106.595.1 vs. uniprot
Match: UPI001C457083 (DUF2237 family protein n=1 Tax=Elioraea tepida TaxID=2843330 RepID=UPI001C457083) HSP 1 Score: 125 bits (314), Expect = 1.710e-34 Identity = 60/98 (61.22%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 28 GGGALNVLGKPLQSCSLPGGPTTGWRRDGFCSTDDHDRGQHCVCSEVTDDFLEYTKAQGNDLSTPRNPY-FPGLKPGDRWCLCSSRWLQAQRAGRAPR 318
GGGA NVLG PL CS P TGW RDG C+T+ D G H VC+ +T+ FL ++KA+GNDLSTPR + FPGLKPGDRWCLC++RW +A AG APR
Sbjct: 12 GGGARNVLGGPLAPCSFQ--PLTGWFRDGCCNTEPGDVGLHTVCAVMTERFLAFSKARGNDLSTPRPEFGFPGLKPGDRWCLCAARWQEALEAGEAPR 107
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 172.2 |
Seed ortholog evalue | 1.6e-40 |
Seed eggNOG ortholog | 2880.D7FXT4 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Uncharacterized protein conserved in bacteria (DUF2237) |
EggNOG OGs | 2S415@2759,COG3651@1 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 3 |
Model size | 398 |
Cds size | 396 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928893.8187106-CDS-F-serratus_M_contig106:648400..648533 | 1622928893.8187106-CDS-F-serratus_M_contig106:648400..648533 | Fucus serratus male | CDS | F-serratus_M_contig106 648401..648533 - |
1690962618.958659-CDS-F-serratus_M_contig106:648400..648533 | 1690962618.958659-CDS-F-serratus_M_contig106:648400..648533 | Fucus serratus male | CDS | F-serratus_M_contig106 648401..648533 - |
1622928893.834697-CDS-F-serratus_M_contig106:649200..649397 | 1622928893.834697-CDS-F-serratus_M_contig106:649200..649397 | Fucus serratus male | CDS | F-serratus_M_contig106 649201..649397 - |
1690962618.9682486-CDS-F-serratus_M_contig106:649200..649397 | 1690962618.9682486-CDS-F-serratus_M_contig106:649200..649397 | Fucus serratus male | CDS | F-serratus_M_contig106 649201..649397 - |
1622928893.8553321-CDS-F-serratus_M_contig106:654269..654335 | 1622928893.8553321-CDS-F-serratus_M_contig106:654269..654335 | Fucus serratus male | CDS | F-serratus_M_contig106 654270..654335 - |
1690962618.9761639-CDS-F-serratus_M_contig106:654269..654335 | 1690962618.9761639-CDS-F-serratus_M_contig106:654269..654335 | Fucus serratus male | CDS | F-serratus_M_contig106 654270..654335 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig106.595.1 >prot_F-serratus_M_contig106.595.1 ID=prot_F-serratus_M_contig106.595.1|Name=mRNA_F-serratus_M_contig106.595.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MSSSATTASGGGALNVLGKPLQSCSLPGGPTTGWRRDGFCSTDDHDRGQH CVCSEVTDDFLEYTKAQGNDLSTPRNPYFPGLKPGDRWCLCSSRWLQAQR AGRAPRWCWRAPTGKRWKWSPSSCSWSTAPTP back to topmRNA from alignment at F-serratus_M_contig106:648401..654335- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig106.595.1 ID=mRNA_F-serratus_M_contig106.595.1|Name=mRNA_F-serratus_M_contig106.595.1|organism=Fucus serratus male|type=mRNA|length=5935bp|location=Sequence derived from alignment at F-serratus_M_contig106:648401..654335- (Fucus serratus male) ATGTCGTCTAGCGCTACGACAGCTTCCGGAGGAGGGGCACTGAACGTGCT
GGGCAAACCCCTACAGGTGCGTGTAGAGCTCTACGCAAAGCTGACCGCGA
CCAAACGAGAGCACAGCATATATGTTTGCCACGCACCCGTAGGCAGTAGG
AAGACGTTACCACATGTACAGCGTCGCGCCGACCTAATTGGATAATCTGT
TCTGCACAAAAGCAGAAGACCTCCACAACTACGTAGTCACGACACTAAGG
CCGCTGCAACGCTACACCCTGTCCCGCCCATCTTCTATTCGATGCGGCGT
CCACTTTCTACTGTTTTGGTTAGTACCGCTGGACTTCCAACTAGTCTTTA
GTCTTTACTCGTTCGTATCTAAACCTTCTTCTGAGTATCCACCCCAGTCA
GAGGGGAAAATTCTGAACACGTTGATTCAGAAGGTCTAGGTGCGTTCTGT
ATTTTCTTCAAACATCAGTTGTTTGTGTTGTGTCCAGGACGAGACGAATC
TGCGTCTCGATCCGTCGCACGCTCGAATTTTGGGTCGTCGGAATTGCAAC
GAGACCTTGGCCTGTTTACGCTGCAGCACAGCAGGCTCGAAACAAACATG
CAGTAGTAGTAGAACTTTGTTCCGCTGTACATATCTTCTGCCGCAGCAGC
AGCAGCAGTTGTATGATGACTCATACACACATATGCAAGTACTTCCTTGT
TCAAGTAGTTGGATACATGTATACTGGTATACAGCACTACTGCTGTACAT
GTAGACTAGTATCCGGAGGACACCGCAACTTCGGGTTCCGCTTTTTTTTG
CAGGTCACATGCGTTGGAGCTCTAATCGGAAGACAACCAGTATGTGTGTA
TGTACATGTATGTATGGTTATCACAAACCATGAGCAAGATCGGGCATCAA
CCGGTGGTTGCTTGCCCAGTCCTGCTCGTGGTCAACTAGCCTATTATTAG
CTTAAGGCCACTTCTTATGTTGTTAGAAAAATGTTATCAGAAAACGCGTT
TTCTGATAACCGTTTTTCTAACAGGATTTTTCCAAAGACCCGTTCTTATC
TTGCAGCTTGTCAAAATATAAAAGGGCAATATAAAAGTAGTTATCACCGG
CCTTTTACTAGGAGGCGTCTGCACGTTTGGAGAGTCTGTCGAATGTGTTG
ACAGTCTGCTGTATGTTTTGTGTTGTCACGAACAACACGTACGTCGCGAA
GGACTACTGCATGTAGACTCATTGCCTAGCTTGTGCACCTACTTCTAACC
GTGGCGTAGTACAGTACGTGATCTTCGATCGTTTCGGACGTGCGCAACCA
CACAAATGCATCTCGAAGGCCGCAACGTGCCATGCAAACTGTGAAAAATC
AGAACCCGCCTAGACCTTTTTTTGTACTGCAAGCGGCCTCTAAAAACATA
GTCTATAATCTGTACGGAGAACGTAACTGCTGTATGATGCACATTGCAGA
GGCTACAGATGTGTTCTCGAGCCATGATTGCACCTTCCACGTGGAACGAG
TGGCAACTGATTACCATTTTTTATCCTCTGCTTGCGGCGTCAATATGCTG
CCACCGTGGCCGTCACCGCTGCGACACAGTAATCCATGCGAGTCTCCAAC
CTACACGAGGTCTGTCTTTGAAGGCGAATTTGATTTTTTGCGTCTGTCCG
TTCCGAGGCACGCCCACAACACATAGCGAAGGACTGCTGCTGCGGGTAGG
CGTATTACCTTGTACACCTACTTACAACCGTGGCATGGTTCAGCACGTGG
TCTTCAATCGTTTGGGGCTTGCACAGCCACACGAATGCAGCTCGAAGGCC
GCAATGTTCCATGCAACTAGTACTGCTGTGCAAGCGACCTCCAATTACAG
CATCAAACAGCATCTAAAACAGCATACATAATAATCTGTACAGAGGAGGT
AAAGCTGCACGACGCACGCTGCAAAGGCTTCAGACAAATATTTTCTCGGG
GAACGACTGCGTCTTCCTCGTCGAGTAACCCCAGAACAAGTGCCAACTGA
TTGATATTTTTTATTCTCTGCTTGGGTTGGGCGTCGATATATATCTGCTA
TCGCGGCTGTCACCGCTGCAACTTATCAGCCGTTGAGAATTCAAACCCTA
GCCGTTGGGAATTCAAACCCATTTCTGATAAGATTTTTAATAAGTGCATC
CTGTTAGAAAATCCTGATTTTCTAACAGGATGAGGTTATCAGAAAATTTT
ATCAGAAAACATCTTGTTAGAAAACGCCTTTTCTGATAACGTAAGAAGCG
GATTTTTGGTCTCTTATCAGAAATGGCGTTTTCTGATAAGATTTTCTAAC
AACATAAGAAGTGGTCTAACCGGGGAACTTACTTTTCTCCTGTACCCGTT
CGCGCGCAAAAAAAAATTGAGCCCGCGAGACAGTTTTGGCCGTCCCGTCC
CGCACTATTAATATTAATAGCCCGCTTCGCTCCTTCTCCACACCCAGACT
GAATCGGGTGCTTAGACTACATAAGCCCGAGTGGTCTATTAATATAATAG
TAGGTAACCTGCATACCTGCTAGTGCGGAAGTCGTGAGTTCGATTCTTAG
CTTAAGCAGAATTTGTGTTCTTTCTTTTGTAACGGAAAGCGTGGGAACGT
GAGTAAGTAAAATTCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACT
TGCATCGCGATAAAAAAAATGTAAGGCGTGAACCGGGGAGGGATGGGAAG
ATCCTTTGTGACCACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATAA
GTGTGATTAAAAAAATAAAGAAAAAAAACTACATGCGTACCGCCAACCGC
CATTGGGTCAGTCCCGAGTCTATCGAGTCACTCAATTACGTAAAATGCCG
ATGACGTTCACCGCCAGGAGTCCGCCAGCACAGGGGTAGCAGTCCCCAAG
GTGGTTCGAGTAACGGGTGTGCTGTGCACACTTATAGCCGATGGACCTCT
AATTACCATCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCCGGT
TCACGCCTTGCAATTTTTTATCGCGATGCAAGTTCAGCACTCTTACAACT
CGTCAACCAATGGTTGAATTTTACTTACTCACGTTCCCACGCTTTCCGTT
ACGAAAGAAAGAACACAAATTCTGCTTAAGCTAAGAATCGAACTCACGAC
TTCCGCACTAGCAGGTATGCAGGTTACCTACTAGACCACTCGGGCGACGA
AATCACGAAACTATTGTACGACGGCACACGGCACAGCTGTCAGCATTTGT
CATGTTTGACGTGTTTCTCGACTGTGGGCACCTCTAAACTCTCCCTGCTG
TTGTAGTCTACCAGTAGTATATAATACGGTTTAAAAGCGGTACAAATCAA
TAAATATTAACGGTTTGAGTCGCTTCCCACACTGTCCGACTATTTCTACT
GCCGCTCGTCGCCCGAGTGGTCTAGTAGGTAACCTGCACACCTGCTACTG
TAGTGCGGAAGTCGTGAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTTC
TTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAGCCA
TTGGCTGACGAGTTGTAAGAGTGATGAACTTGCATCGCGATAAAAATTGC
AAGGCGTGAACCGGGGAGAGATGGGCAGATCCTTTGTGACCACAGGCAGG
ATGGTAATTAGAGAGGTCCATCGGCTTATAAGTGTGATAAAATAAAATAA
AATAAATCATTGGTTGACGAGTTGTAAGATTGCTGAACTTGCATATCGCA
ATAAAAAATATTTGGTACATGAGTAGGTAGCTGCTCTAAGGTGTCAACCG
GGAAGAGAGATGGCAACGTTGAGGCCCCGGCTAGGAGTTTTTGAGTGAGG
AAAGAAAAATAAAAAGAAGTGGACTTGAGTGGAGTTAGTTAATTCGCACC
TTCATTACCTACTGGTATAACAGACTGAAACGGCGAAACGGCCCTCCCAA
AATCGCGTGTACAGCAGTACTCGTGTCGCGAGTAGGGTCTAGAAAAAGAG
GAGCCGTCTCCCAACACATCACATTTACCGCATAATACATGTAATACACC
CAGACAGTACCTACTCTACGGGAGAGTAGTTCTGCTACCACAACCACCCT
CTATTCTCGGTGTGTTCTCGGCCTCAGCCCTGGTTTTAAAGATTCGATTC
AATATCTACTCCCGACGGGGCTCGTACCTTGCTTTGCCTTGGCTCACAGA
CCACACATGGGCTCTACCAAGGTACAGTACGAGGCTTTTTAGCCGGCGCG
GCGTTGCCTGTCGCTGGCAGGCGTGGTTTCGACGGGCATAGAGGGACCAA
CCTTACAAGAACAAAAAGCCATCAAGCTGAGATGTTTTGGTGTGCCACCT
TACAATACACGAGAAAAAATGTGTGTGATTTTTTTTAACATTGCGCGGCC
TCCAAAAATCGAAACACGTGTTACGGCGGAGGATATAGACGTTTGCTCTC
GTGCGGCGCGACTCCGCACCTTCTGCATACCTCCCGTAATAGTTACATTC
ATAGACTACTTACATTACGGTTACATTTCCATACCCAATCTAGACTGGAA
GATTTTAAATCTGAATAGCCACCTCTTGAGATTGTGAAATACAGTTTGAC
GTTCCTTCCTCCCCCAACCACCCCCCCCCACCCCCCGCCCCCCTGTGCAC
GCTTTCGGTACATCAAATCAGTACAATATGCCCCTGCGCCCTTAGTCAAG
ATCAGCTCGACTCACACTCGAGTGACTTCAGGAATGCAGTATATATTGGT
TATGTATATCGCCGTCCGCGTGGAGCGAACATTGGAACTCCCGCGGTATG
ACATTTAAGCCACCCCCCCCCCCAAAGTATGACGTCATCCTGGCAACCGT
TTGTTGCGATCCACTCCGTTCTATGGCCCCCTTCGAATAAACACTCCCGT
GTTGACTTGACGTCATTCTACGCCTCATACGACGCCAGTCTTGCTCGCTG
CCTGGAGGGCCGACGACCGGCTGGCGACGAGACGGCTTCTGCAGCACCGA
CGATCACGATCGTGGTCAACACTGCGTCTGCTCGGAGGTGACGGACGATT
TTCTGGAGTACACCAAAGCCCAGGGTAACGACCTCTCCACACCGCGGAAC
CCCTACTTCCCAGGCCTCAAGCCGGGAGATCGATGGTGGGTAGTGGGCAT
CCCCCCCCTCTTCTGAATCAGAAATCTTTCCGTTTTTTTCTTCTCTAACA
TCCCGATCACGTTTCTCTCTGTTTTGATCGCTATTTCATATGAGGACACT
CACGTTTCGTATGAAAGTACAGTTGAGCGAGTTGATCAACCAGCCAGCCT
CCGCCCGCTGGAGAGGAAATTTGGTCGTTCTTAACATTGTTTTTTTTTTT
TTAATGTTTTGTTGTTGTGAATTCTGATTTTGGAGTTTTGTATTAGTGTT
TTTTTTTAATGTTTTGTTGTGCTTTGTTGTGTTTTGGCTCTTCTTCTTTT
TCTCGGTCTTTGGCAAGGAGGTTTCGGTCAATGGTACGTCTTTTTCCTTG
CTGACGCTTCCCTTCCCTTCCCTTCCCTTCCCTTAACTCTGGGTCCGCTT
TTCTGTCTTGCTGGCCCTTCGATGACTGCTCGCGCGCTAGGCCCGTTTAG
TTGTTGCTGTTGCTGCAGCTGCTATTGTTCTTCTATTCTGAATATAGAGG
TACCTGTCAAGAACACAATAAGCACGCTGACAGGACGCCAATACCTGAAA
TACCGACGTACATCCGAATGCCTAAAATGTCCCTCCTTGGTTGACTTCAC
GGCTGGTAGCTGTCAACGTGCTCAACGTGCTCAACGTGCTCGCCTCGACC
AGGTGTCTTTGTTCGTCGCGGTGGCTGCAGGCGCAGCGCGCTGGGAGAGC
TCCCCGGTGGTGTTGGAGAGCACCCACCGGAAAGCGCTGGAAGTGGTCCC
CCTCGAGCTGCTCATGGAGCACAGCTCCAACCCCG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig106:648401..654335- >mRNA_F-serratus_M_contig106.595.1 ID=mRNA_F-serratus_M_contig106.595.1|Name=mRNA_F-serratus_M_contig106.595.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig106:648401..654335- (Fucus serratus male) ATGTCGTCTAGCGCTACGACAGCTTCCGGAGGAGGGGCACTGAACGTGCT GGGCAAACCCCTACAGATGTCGTCTAGCGCTACGACAGCTTCCGGAGGAG GGGCACTGAACGTGCTGGGCAAACCCCTACAGTCTTGCTCGCTGCCTGGA GGGCCGACGACCGGCTGGCGACGAGACGGCTTCTGCAGCACCGACGATCA CGATCGTGGTCAACACTGCGTCTGCTCGGAGGTGACGGACGATTTTCTGG AGTACACCAAAGCCCAGGGTAACGACCTCTCCACACCGCGGAACCCCTAC TTCCCAGGCCTCAAGCCGGGAGATCGATGTCTTGCTCGCTGCCTGGAGGG CCGACGACCGGCTGGCGACGAGACGGCTTCTGCAGCACCGACGATCACGA TCGTGGTCAACACTGCGTCTGCTCGGAGGTGACGGACGATTTTCTGGAGT ACACCAAAGCCCAGGGTAACGACCTCTCCACACCGCGGAACCCCTACTTC CCAGGCCTCAAGCCGGGAGATCGATGGTGTCTTTGTTCGTCGCGGTGGCT GCAGGCGCAGCGCGCTGGGAGAGCTCCCCGGTGGTGTTGGAGAGCACCCA CCGGAAAGCGCTGGAAGTGGTCCCCCTCGAGCTGCTCATGGAGCACAGCT CCAACCCCGGTGTCTTTGTTCGTCGCGGTGGCTGCAGGCGCAGCGCGCTG GGAGAGCTCCCCGGTGGTGTTGGAGAGCACCCACCGGAAAGCGCTGGAAG TGGTCCCCCTCGAGCTGCTCATGGAGCACAGCTCCAACCCCG back to top
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