mRNA_F-serratus_M_contig1059.584.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1059.584.1
Unique NamemRNA_F-serratus_M_contig1059.584.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1059.584.1 vs. uniprot
Match: A0A3L6QQN3_PANMI (Protein kinase domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6QQN3_PANMI)

HSP 1 Score: 96.7 bits (239), Expect = 4.960e-22
Identity = 58/143 (40.56%), Postives = 77/143 (53.85%), Query Frame = 3 
Query:   12 DFQAEVLMLAALRHPNVCLFMAACMTAPNRAIVTELVTRGSLWQALKNDDLPSVTFGMDAFGCSTPGPRGGRGQVQHPRAVFNTPAGCWPWPAIIKVAMGTACGMNYLHRREPFPILHRDLKSANILLDECFNVKICDFGLAR 440
            +F  EV ++ +LRHPN+ LFM A    PN +IVTE ++RGSL++ L                      R G  +V   R   N             +A   A GMNYLHRR P PI+HRDLKS N+L+D+ + VK+CDFGL+R
Sbjct:   12 EFMREVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLYKLLH---------------------RSGAKEVLDERRRLN-------------MAFDVAKGMNYLHRRSP-PIVHRDLKSPNLLVDKKYTVKVCDFGLSR 119
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BLAST of mRNA_F-serratus_M_contig1059.584.1 vs. uniprot
Match: L8GK27_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GK27_ACACA)

HSP 1 Score: 101 bits (251), Expect = 5.370e-22
Identity = 57/142 (40.14%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:   15 FQAEVLMLAALRHPNVCLFMAACMTAPNRAIVTELVTRGSLWQALKNDDLPSVTFGMDAFGCSTPGPRGGRGQVQHPRAVFNTPAGCWPWPAIIKVAMGTACGMNYLHRREPFPILHRDLKSANILLDECFNVKICDFGLAR 440
            F+ E  M+A LRHPNV LF+ AC+ +PN  I+TE + +GSL   L N    SV F                                 PWP  ++V  G   G++YLH + P PI+HRDLKS+N+L+DE +N KI DFG AR
Sbjct: 1277 FREEAAMMAELRHPNVVLFIGACVRSPNMCIITEWIPKGSLRDVLTNH---SVKF---------------------------------PWPTRLRVLHGIVLGLSYLHSQSP-PIMHRDLKSSNVLVDESWNAKIADFGFAR 1381
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BLAST of mRNA_F-serratus_M_contig1059.584.1 vs. uniprot
Match: A0A2U7UGG4_9VIRU (Serine/threonine protein kinase n=1 Tax=Pandoravirus macleodensis TaxID=2107707 RepID=A0A2U7UGG4_9VIRU)

HSP 1 Score: 99.0 bits (245), Expect = 3.480e-21
Identity = 60/145 (41.38%), Postives = 77/145 (53.10%), Query Frame = 3 
Query:    6 AADFQAEVLMLAALRHPNVCLFMAACMTAPNRAIVTELVTRGSLWQALKNDDLPSVTFGMDAFGCSTPGPRGGRGQVQHPRAVFNTPAGCWPWPAIIKVAMGTACGMNYLHRREPFPILHRDLKSANILLDECFNVKICDFGLAR 440
            A DF+AEV  L+ L HPNV LF+ AC+ APN  +VTE V RGSL   L N                           Q  R VFNT          +++    A G+ YLH  +P P++HRDLKS N+L+D+ +NVK+ DFGLAR
Sbjct: 1567 ALDFRAEVACLSELSHPNVVLFVGACVQAPNLCVVTEYVARGSLAGVLAN--------------------------AQGQRLVFNTR---------VRMLRSAARGVAYLHGLDP-PVVHRDLKSGNLLVDQDYNVKVADFGLAR 1675
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BLAST of mRNA_F-serratus_M_contig1059.584.1 vs. uniprot
Match: A0A834WI62_9FABA (Serine/threonine-protein kinase CTR1-like isoform X1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WI62_9FABA)

HSP 1 Score: 97.1 bits (240), Expect = 3.740e-21
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 3 
Query:   12 DFQAEVLMLAALRHPNVCLFMAACMTAPNRAIVTELVTRGSLWQALKNDDLPSVTFGMDAFGCSTPGPRGGRGQVQHPRAVFNTPAGCWPWPAIIKVAMGTACGMNYLHRREPFPILHRDLKSANILLDECFNVKICDFGLAR 440
            +F+ EVL++  LRHPN+ L M A    PN +IVTE ++RGSL++ L+  D  SV      F                                   +A   A GMNYLH+ +P PI+HRDLKS N+L+D+ + VK+CDFGL+R
Sbjct:  125 EFRKEVLLMKRLRHPNIVLLMGAVFQQPNFSIVTEYLSRGSLFELLRMPDARSVLSAKRRF----------------------------------SMAYDVASGMNYLHQMKP-PIVHRDLKSPNLLVDDTYTVKVCDFGLSR 232
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BLAST of mRNA_F-serratus_M_contig1059.584.1 vs. uniprot
Match: Q7XAV0_CUCSA (CTR1-like protein kinase (Fragment) n=1 Tax=Cucumis sativus TaxID=3659 RepID=Q7XAV0_CUCSA)

HSP 1 Score: 93.6 bits (231), Expect = 4.030e-21
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 3 
Query:   12 DFQAEVLMLAALRHPNVCLFMAACMTAPNRAIVTELVTRGSLWQALKNDDLPSVTFGMDAFGCSTPGPRGGRGQVQHPRAVFNTPAGCWPWPAIIKVAMGTACGMNYLHRREPFPILHRDLKSANILLDECFNVKICDFGLAR 440
            +F  EV ++ +LRHPN+ LFM A    PN +IVTE ++RGSL++ L                      + G   +   R +               +A   A GMNYLHRR+P PI+HRDLKS N+L+D+ + VK+CDFGL+R
Sbjct:   27 EFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLH---------------------KSGVKDIDETRRI--------------NMAFDVAKGMNYLHRRDP-PIVHRDLKSPNLLVDKKYTVKVCDFGLSR 133
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1059.584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6QQN3_PANMI4.960e-2240.56Protein kinase domain-containing protein n=1 Tax=P... [more]
L8GK27_ACACA5.370e-2240.14Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
A0A2U7UGG4_9VIRU3.480e-2141.38Serine/threonine protein kinase n=1 Tax=Pandoravir... [more]
A0A834WI62_9FABA3.740e-2138.46Serine/threonine-protein kinase CTR1-like isoform ... [more]
Q7XAV0_CUCSA4.030e-2138.46CTR1-like protein kinase (Fragment) n=1 Tax=Cucumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1059contigF-serratus_M_contig1059:304967..306097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue8.7e-40
Seed eggNOG ortholog2880.D7FTY8
Preferred namepats1
KEGG koko:K08844,ko:K17535
KEGG Pathwayko05012,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0015629,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022402,GO:0023052,GO:0030587,GO:0031156,GO:0032502,GO:0035556,GO:0036211,GO:0042578,GO:0042641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045595,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0061640,GO:0065007,GO:0071704,GO:0090702,GO:0099120,GO:0099134,GO:0099135,GO:0099136,GO:0099139,GO:0140096,GO:1901261,GO:1901564,GO:1903047,GO:2000241
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionputative tyrosine kinase-like protein
Ec32 orthologEc-07_002880.1
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147
Exons3
Model size455
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1059.584.1prot_F-serratus_M_contig1059.584.1Fucus serratus malepolypeptideF-serratus_M_contig1059 304999..306097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.8186915-UTR-F-serratus_M_contig1059:304966..3049981622928891.8186915-UTR-F-serratus_M_contig1059:304966..304998Fucus serratus maleUTRF-serratus_M_contig1059 304967..304998 +
1690962617.9505107-UTR-F-serratus_M_contig1059:304966..3049981690962617.9505107-UTR-F-serratus_M_contig1059:304966..304998Fucus serratus maleUTRF-serratus_M_contig1059 304967..304998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.8339617-CDS-F-serratus_M_contig1059:304998..3051361622928891.8339617-CDS-F-serratus_M_contig1059:304998..305136Fucus serratus maleCDSF-serratus_M_contig1059 304999..305136 +
1690962617.9605923-CDS-F-serratus_M_contig1059:304998..3051361690962617.9605923-CDS-F-serratus_M_contig1059:304998..305136Fucus serratus maleCDSF-serratus_M_contig1059 304999..305136 +
1622928891.8440197-CDS-F-serratus_M_contig1059:305479..3056081622928891.8440197-CDS-F-serratus_M_contig1059:305479..305608Fucus serratus maleCDSF-serratus_M_contig1059 305480..305608 +
1690962617.9682512-CDS-F-serratus_M_contig1059:305479..3056081690962617.9682512-CDS-F-serratus_M_contig1059:305479..305608Fucus serratus maleCDSF-serratus_M_contig1059 305480..305608 +
1622928891.8573565-CDS-F-serratus_M_contig1059:305941..3060971622928891.8573565-CDS-F-serratus_M_contig1059:305941..306097Fucus serratus maleCDSF-serratus_M_contig1059 305942..306097 +
1690962617.9764185-CDS-F-serratus_M_contig1059:305941..3060971690962617.9764185-CDS-F-serratus_M_contig1059:305941..306097Fucus serratus maleCDSF-serratus_M_contig1059 305942..306097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1059.584.1

>prot_F-serratus_M_contig1059.584.1 ID=prot_F-serratus_M_contig1059.584.1|Name=mRNA_F-serratus_M_contig1059.584.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MLAALRHPNVCLFMAACMTAPNRAIVTELVTRGSLWQALKNDDLPSVTFG
MDAFGCSTPGPRGGRGQVQHPRAVFNTPAGCWPWPAIIKVAMGTACGMNY
LHRREPFPILHRDLKSANILLDECFNVKICDFGLARCATQ*
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mRNA from alignment at F-serratus_M_contig1059:304967..306097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1059.584.1 ID=mRNA_F-serratus_M_contig1059.584.1|Name=mRNA_F-serratus_M_contig1059.584.1|organism=Fucus serratus male|type=mRNA|length=1131bp|location=Sequence derived from alignment at F-serratus_M_contig1059:304967..306097+ (Fucus serratus male)
AGATTGCCGCGGACTTCCAAGCGGAGGTCCTCATGCTGGCGGCACTTCGG
CACCCCAACGTCTGCCTGTTCATGGCGGCTTGCATGACCGCACCGAACCG
GGCAATTGTAACCGAACTGGTTACCCGAGGGTCTCTTTGGCAGGCTCTGA
AGAACGACGACCTCCCGTCGGTGAGACGAGATTACATGTAGATACTGTAG
AGCTAATACATTATAGATTATATATTAGATTAGCAGGTGTAGATTAAATT
ATATTGGATGGATGGCTTGATCGATACGGTATCAAACCAGACTTGTCCTT
CAGTTAACCACAGTAACTACATAAAATCTATTAATACTACAGTAACTAGA
TTATTAACTTGGCTGTACAGTACCGGTCGATCCATGCATTCGATGCTGTA
GGAACACGGCTTGGGCCATGACCAATCGCACACGACATAAACTATTAATA
CGACTACCGGTGTACTGCCTAACGGCGGGCAACTAAGAACATAGTTATTG
GTAATTTGTACAGGTTACATTCGGTATGGATGCCTTTGGGTGCAGCACCC
CTGGACCTAGAGGCGGACGAGGGCAAGTGCAGCACCCCAGGGCAGTGTTC
AACACCCCTGCCGGTTGCTGGCCATGGCCCGCCATCATAAAGGTTTGGTT
TGATTTGACACTATTATATGGTAATATTTATACTCATACCAGCACTAAAC
TATGGTGTTGTAGCCGTTCGGCTCTAATCTTTGTCATTTTATTTTTCGGC
GTCGACCGACGGTGGTACAGTACAGTGCTAATTTTAACATATTATAGTAC
ATGTCACATGTTAACATGTTCAAGTGAGATCCGTTCAGTACGGTATATGA
AATCAGCTCTCCTGCTCGGCAGTAAAACTATATTATACACTCGGTTGATA
TGGTAAAAAATCGCATAGCTAAACTCCACTTCGAGATAAATACAAATGTT
GGTGATTATATTGCTGTATCCCCAGGTAGCCATGGGCACAGCCTGCGGCA
TGAATTACCTGCACAGGAGAGAGCCCTTCCCCATCCTCCACCGCGATCTG
AAGAGCGCCAACATACTCCTCGATGAATGTTTTAATGTGAAGATCTGTGA
CTTCGGCCTTGCAAGGTGCGCAACGCAATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1059:304967..306097+

>mRNA_F-serratus_M_contig1059.584.1 ID=mRNA_F-serratus_M_contig1059.584.1|Name=mRNA_F-serratus_M_contig1059.584.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig1059:304967..306097+ (Fucus serratus male)
ATGCTGGCGGCACTTCGGCACCCCAACGTCTGCCTGTTCATGGCGGCTTG
CATGACCGCACCGAACCGGGCAATTGTAACCGAACTGGTTACCCGAGGGT
CTCTTTGGCAGGCTCTGAAGAACGACGACCTCCCGTCGATGCTGGCGGCA
CTTCGGCACCCCAACGTCTGCCTGTTCATGGCGGCTTGCATGACCGCACC
GAACCGGGCAATTGTAACCGAACTGGTTACCCGAGGGTCTCTTTGGCAGG
CTCTGAAGAACGACGACCTCCCGTCGGTTACATTCGGTATGGATGCCTTT
GGGTGCAGCACCCCTGGACCTAGAGGCGGACGAGGGCAAGTGCAGCACCC
CAGGGCAGTGTTCAACACCCCTGCCGGTTGCTGGCCATGGCCCGCCATCA
TAAAGGTTACATTCGGTATGGATGCCTTTGGGTGCAGCACCCCTGGACCT
AGAGGCGGACGAGGGCAAGTGCAGCACCCCAGGGCAGTGTTCAACACCCC
TGCCGGTTGCTGGCCATGGCCCGCCATCATAAAGGTAGCCATGGGCACAG
CCTGCGGCATGAATTACCTGCACAGGAGAGAGCCCTTCCCCATCCTCCAC
CGCGATCTGAAGAGCGCCAACATACTCCTCGATGAATGTTTTAATGTGAA
GATCTGTGACTTCGGCCTTGCAAGGTGCGCAACGCAATAGGTAGCCATGG
GCACAGCCTGCGGCATGAATTACCTGCACAGGAGAGAGCCCTTCCCCATC
CTCCACCGCGATCTGAAGAGCGCCAACATACTCCTCGATGAATGTTTTAA
TGTGAAGATCTGTGACTTCGGCCTTGCAAGGTGCGCAACGCAATAG
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