mRNA_F-serratus_M_contig1059.581.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1059.581.1
Unique NamemRNA_F-serratus_M_contig1059.581.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6S7FI90_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FI90_PARCT)

HSP 1 Score: 52.4 bits (124), Expect = 9.870e-6
Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            G+T+V +SR + L+ L+IEP+TF+RL+ + +   L+ R++EEERL+ +A +T
Sbjct:  716 GMTYVAISRVRNLSSLIIEPITFDRLTSIKQLEALKYRVKEEERLKKIARKT 767
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: UPI00109BE5C8 (uncharacterized protein LOC110237019 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE5C8)

HSP 1 Score: 52.4 bits (124), Expect = 1.020e-5
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET---LHHH 242
            G+++V +SR K L  L+IEPM+FERL+ +    TL+ RLREE RL  LA  T    H+H
Sbjct: 1972 GISYVAISRVKTLASLVIEPMSFERLTSVRSSTTLQYRLREESRLDDLAQLTNNAFHYH 2030
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: UPI000E6FAFB5 (uncharacterized protein LOC113291610 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FAFB5)

HSP 1 Score: 49.7 bits (117), Expect = 3.350e-5
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMT-FERLSKLGEKPTLRLRLREEERLRALA 221
            GLTFV LSR +RL+DL   PM  FER+ K+GE   L  R REEERL+ L+
Sbjct:  109 GLTFVALSRTRRLSDLAFHPMLRFERIYKIGECKALPERRREEERLQELS 158
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A7J7NPJ0_9MAGN (ATP-dependent DNA helicase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NPJ0_9MAGN)

HSP 1 Score: 49.7 bits (117), Expect = 8.250e-5
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPM-TFERLSKLGEKPTLRLRLREEERLRALA 221
            GLTFV LSR ++L+DL  +PM TFERL KLG+   L  R+ EEE LR ++
Sbjct:  337 GLTFVALSRTRKLSDLAFKPMFTFERLQKLGKCAGLNSRMEEEECLRLMS 386
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A7J6WG84_THATH (ATP-dependent DNA helicase n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WG84_THATH)

HSP 1 Score: 49.7 bits (117), Expect = 8.530e-5
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPM-TFERLSKLGEKPTLRLRLREEERLRALA 221
             LTFV LSR ++L+DL   PM TFERL K+G+   L+ RL EEERLR ++
Sbjct:  479 SLTFVALSRTRKLSDLAFSPMFTFERLQKIGKCAGLKPRLDEEERLRIMS 528
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7FI90_PARCT9.870e-644.23ATP-dependent DNA helicase n=2 Tax=Paramuricea cla... [more]
UPI00109BE5C81.020e-549.15uncharacterized protein LOC110237019 n=1 Tax=Exaip... [more]
UPI000E6FAFB53.350e-558.00uncharacterized protein LOC113291610 n=1 Tax=Papav... [more]
A0A7J7NPJ0_9MAGN8.250e-556.00ATP-dependent DNA helicase n=1 Tax=Kingdonia unifl... [more]
A0A7J6WG84_THATH8.530e-556.00ATP-dependent DNA helicase n=1 Tax=Thalictrum thal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1059contigF-serratus_M_contig1059:106996..107623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size291
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1059.581.1prot_F-serratus_M_contig1059.581.1Fucus serratus malepolypeptideF-serratus_M_contig1059 107362..107589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.2573056-UTR-F-serratus_M_contig1059:106995..1070181622928891.2573056-UTR-F-serratus_M_contig1059:106995..107018Fucus serratus maleUTRF-serratus_M_contig1059 106996..107018 +
1690962617.7680538-UTR-F-serratus_M_contig1059:106995..1070181690962617.7680538-UTR-F-serratus_M_contig1059:106995..107018Fucus serratus maleUTRF-serratus_M_contig1059 106996..107018 +
1622928891.299139-UTR-F-serratus_M_contig1059:107355..1073611622928891.299139-UTR-F-serratus_M_contig1059:107355..107361Fucus serratus maleUTRF-serratus_M_contig1059 107356..107361 +
1690962617.7770078-UTR-F-serratus_M_contig1059:107355..1073611690962617.7770078-UTR-F-serratus_M_contig1059:107355..107361Fucus serratus maleUTRF-serratus_M_contig1059 107356..107361 +
1622928891.334488-UTR-F-serratus_M_contig1059:107589..1076231622928891.334488-UTR-F-serratus_M_contig1059:107589..107623Fucus serratus maleUTRF-serratus_M_contig1059 107590..107623 +
1690962617.7973242-UTR-F-serratus_M_contig1059:107589..1076231690962617.7973242-UTR-F-serratus_M_contig1059:107589..107623Fucus serratus maleUTRF-serratus_M_contig1059 107590..107623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.3204594-CDS-F-serratus_M_contig1059:107361..1075891622928891.3204594-CDS-F-serratus_M_contig1059:107361..107589Fucus serratus maleCDSF-serratus_M_contig1059 107362..107589 +
1690962617.7860663-CDS-F-serratus_M_contig1059:107361..1075891690962617.7860663-CDS-F-serratus_M_contig1059:107361..107589Fucus serratus maleCDSF-serratus_M_contig1059 107362..107589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1059.581.1

>prot_F-serratus_M_contig1059.581.1 ID=prot_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=polypeptide|length=76bp
MLLLPRPRGWLLGHYGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTL
RLRLREEERLRALAGETLHHHGGVA*
back to top

mRNA from alignment at F-serratus_M_contig1059:106996..107623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1059.581.1 ID=mRNA_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=mRNA|length=628bp|location=Sequence derived from alignment at F-serratus_M_contig1059:106996..107623+ (Fucus serratus male)
TGAAGAAACGAGCCGACGACCTCGTAAGCGCTGTTTGAATTTTCGAAAAT
AAAAACTGTGTTTCAAACAGTCTGAACTTTCTGTTATCGAGACAACTGCT
GTGAACTTGAACTCATATACCGCAATTTGTGGCTTTTGTTCTACACTGTT
GTAGGCTCTCCATGAAGAAACGACCCGACGGCCTGGTAATCACAGAGGTG
TCGTACGATGTACTAAATTGTTGAATAGGGGCATTAGACTTCTGTCTCTT
CTCCGACCAGTTTTTCATCATCACACAGCCCGCTGGAAATATTCCCAAAT
TAATACGTCGCTCGCCCTCTCTGCGATGTACCTATACGGCTTTGCACTTC
CGTTGCACAGCCGCCGATGCTGCTGCTGCCGAGGCCGCGCGGGTGGCTGC
TCGGACACTACGGACTCACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTA
ACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCTTTCAAAACTCGG
CGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAGAGCGCCTTCGAG
CTCTCGCGGGGGAAACGCTACACCACCACGGGGGTGTTGCGTAATGCATG
TCAGTTTTCCGGTGACAATTCGTGTGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1059:106996..107623+

>mRNA_F-serratus_M_contig1059.581.1 ID=mRNA_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=CDS|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1059:106996..107623+ (Fucus serratus male)
ATGCTGCTGCTGCCGAGGCCGCGCGGGTGGCTGCTCGGACACTACGGACT
CACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTAACGGATCTTTTAATAG
AGCCCATGACATTCGAGAGGCTTTCAAAACTCGGCGAGAAACCGACATTG
CGACTTCGGCTACGAGAAGAAGAGCGCCTTCGAGCTCTCGCGGGGGAAAC
GCTACACCACCACGGGGGTGTTGCGTAAATGCTGCTGCTGCCGAGGCCGC
GCGGGTGGCTGCTCGGACACTACGGACTCACGTTCGTGTGTCTTAGCCGC
GCAAAGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCT
TTCAAAACTCGGCGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAG
AGCGCCTTCGAGCTCTCGCGGGGGAAACGCTACACCACCACGGGGGTGTT
GCGTAA
back to top