mRNA_F-serratus_M_contig1059.581.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1059.581.1
Unique NamemRNA_F-serratus_M_contig1059.581.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5JGH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.330e-10
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEE 203
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EEE
Sbjct:  469 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEE 511          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.210e-9
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREE-----ERLRALAGETLH 236
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE     +R  A+  E+ H
Sbjct: 1527 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEASDALDRQNAIFDESGH 1585          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: UPI000C038F98 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C038F98)

HSP 1 Score: 55.5 bits (132), Expect = 2.290e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGETLHHH 242
            GL ++ LSR ++L+DL+IEPM FERL  + +    + RL EE RL  LA +TLH++
Sbjct:  107 GLAYIALSRVRKLSDLVIEPMGFERLQSIKKTSNYKFRLLEEARLNILAEKTLHNY 162          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A7D9JY90_PARCT (UvrD_C_2 domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JY90_PARCT)

HSP 1 Score: 53.5 bits (127), Expect = 2.980e-7
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            G+T+V +SRA+ L  L+IEPMTF+RL+ + +  +L+ RL EE+RL+A+A  T
Sbjct:   40 GMTYVAISRARNLLSLIIEPMTFDRLTCIKKNESLQYRLEEEKRLQAIANFT 91          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6S7JIW3_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JIW3_PARCT)

HSP 1 Score: 56.6 bits (135), Expect = 3.250e-7
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGETL 233
            G+T+V LSRA+ LT L+IEPMT++RLS + +  +L  RL+EE+RL+ +A  TL
Sbjct: 1064 GITYVALSRARNLTSLVIEPMTYDRLSSIKKMQSLSYRLQEEKRLQVIANLTL 1116          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: UPI00077A45EF (ATP-dependent DNA helicase PIF7-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A45EF)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-6
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGETLHHHGGV 251
            GL +V LSR +R+TDL+I+PM+FERL  L +    + RL EE RL  LA  T+  H G+
Sbjct:  702 GLAYVALSRVRRITDLVIKPMSFERLHLLKKTSNYKFRLLEEARLDKLAQRTVESHIGL 760          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A7J6WDW9_THATH (Atp-dependent dna helicase pif1 n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WDW9_THATH)

HSP 1 Score: 52.8 bits (125), Expect = 3.090e-6
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPM-TFERLSKLGEKPTLRLRLREEERLRALA 221
            GLTFV LSR ++L+DL   PM TFERL K+G+   L+ RL EEERLR +A
Sbjct:  132 GLTFVALSRTRKLSDLAFSPMFTFERLHKIGKCAGLKPRLDEEERLRIMA 181          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: UPI000C045087 (uncharacterized protein LOC111325086 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C045087)

HSP 1 Score: 53.5 bits (127), Expect = 3.950e-6
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRAL---AGETLHH 239
            G+T+V LSR KRL DL+IEPMTFERL    +   L+ RL EE+RL +L   A +  HH
Sbjct: 1133 GMTYVALSRVKRLQDLIIEPMTFERLQAYKKSNFLKYRLIEEKRLDSLSLNASKNGHH 1190          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A3M6TBZ5_POCDA (ATP-dependent DNA helicase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TBZ5_POCDA)

HSP 1 Score: 53.5 bits (127), Expect = 3.980e-6
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRAL---AGETLHH 239
            G+T+V LSR KRL DL+IEPMTFERL    +   L+ RL EE+RL +L   A +  HH
Sbjct: 1078 GMTYVALSRVKRLQDLIIEPMTFERLQAYKKSNFLKYRLIEEKRLDSLSLNASKNGHH 1135          
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: UPI000A2A6B3A (uncharacterized protein LOC110247455 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6B3A)

HSP 1 Score: 52.8 bits (125), Expect = 7.190e-6
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 3
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGETLHHH 242
            G+++V +SR K L+ L+IEPMTFERL+ +    TL  RL EE RL  LA  T   H
Sbjct:  658 GISYVAISRVKTLSSLVIEPMTFERLTAIKSSTTLHYRLEEESRLDYLAESTRASH 713          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGH7_9PHAE3.330e-1067.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE1.210e-954.24ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
UPI000C038F982.290e-748.21ATP-dependent DNA helicase PIF6-like n=1 Tax=Stylo... [more]
A0A7D9JY90_PARCT2.980e-750.00UvrD_C_2 domain-containing protein (Fragment) n=1 ... [more]
A0A6S7JIW3_PARCT3.250e-752.83ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
UPI00077A45EF1.520e-649.15ATP-dependent DNA helicase PIF7-like n=1 Tax=Acrop... [more]
A0A7J6WDW9_THATH3.090e-660.00Atp-dependent dna helicase pif1 n=1 Tax=Thalictrum... [more]
UPI000C0450873.950e-653.45uncharacterized protein LOC111325086 n=1 Tax=Stylo... [more]
A0A3M6TBZ5_POCDA3.980e-653.45ATP-dependent DNA helicase n=2 Tax=Pocillopora dam... [more]
UPI000A2A6B3A7.190e-650.00uncharacterized protein LOC110247455 n=1 Tax=Exaip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1059contigF-serratus_M_contig1059:106996..107623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size291
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1059.581.1prot_F-serratus_M_contig1059.581.1Fucus serratus malepolypeptideF-serratus_M_contig1059 107362..107589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.2573056-UTR-F-serratus_M_contig1059:106995..1070181622928891.2573056-UTR-F-serratus_M_contig1059:106995..107018Fucus serratus maleUTRF-serratus_M_contig1059 106996..107018 +
1690962617.7680538-UTR-F-serratus_M_contig1059:106995..1070181690962617.7680538-UTR-F-serratus_M_contig1059:106995..107018Fucus serratus maleUTRF-serratus_M_contig1059 106996..107018 +
1622928891.299139-UTR-F-serratus_M_contig1059:107355..1073611622928891.299139-UTR-F-serratus_M_contig1059:107355..107361Fucus serratus maleUTRF-serratus_M_contig1059 107356..107361 +
1690962617.7770078-UTR-F-serratus_M_contig1059:107355..1073611690962617.7770078-UTR-F-serratus_M_contig1059:107355..107361Fucus serratus maleUTRF-serratus_M_contig1059 107356..107361 +
1622928891.334488-UTR-F-serratus_M_contig1059:107589..1076231622928891.334488-UTR-F-serratus_M_contig1059:107589..107623Fucus serratus maleUTRF-serratus_M_contig1059 107590..107623 +
1690962617.7973242-UTR-F-serratus_M_contig1059:107589..1076231690962617.7973242-UTR-F-serratus_M_contig1059:107589..107623Fucus serratus maleUTRF-serratus_M_contig1059 107590..107623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.3204594-CDS-F-serratus_M_contig1059:107361..1075891622928891.3204594-CDS-F-serratus_M_contig1059:107361..107589Fucus serratus maleCDSF-serratus_M_contig1059 107362..107589 +
1690962617.7860663-CDS-F-serratus_M_contig1059:107361..1075891690962617.7860663-CDS-F-serratus_M_contig1059:107361..107589Fucus serratus maleCDSF-serratus_M_contig1059 107362..107589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1059.581.1

>prot_F-serratus_M_contig1059.581.1 ID=prot_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=polypeptide|length=76bp
MLLLPRPRGWLLGHYGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTL
RLRLREEERLRALAGETLHHHGGVA*
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mRNA from alignment at F-serratus_M_contig1059:106996..107623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1059.581.1 ID=mRNA_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=mRNA|length=628bp|location=Sequence derived from alignment at F-serratus_M_contig1059:106996..107623+ (Fucus serratus male)
TGAAGAAACGAGCCGACGACCTCGTAAGCGCTGTTTGAATTTTCGAAAAT AAAAACTGTGTTTCAAACAGTCTGAACTTTCTGTTATCGAGACAACTGCT GTGAACTTGAACTCATATACCGCAATTTGTGGCTTTTGTTCTACACTGTT GTAGGCTCTCCATGAAGAAACGACCCGACGGCCTGGTAATCACAGAGGTG TCGTACGATGTACTAAATTGTTGAATAGGGGCATTAGACTTCTGTCTCTT CTCCGACCAGTTTTTCATCATCACACAGCCCGCTGGAAATATTCCCAAAT TAATACGTCGCTCGCCCTCTCTGCGATGTACCTATACGGCTTTGCACTTC CGTTGCACAGCCGCCGATGCTGCTGCTGCCGAGGCCGCGCGGGTGGCTGC TCGGACACTACGGACTCACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTA ACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCTTTCAAAACTCGG CGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAGAGCGCCTTCGAG CTCTCGCGGGGGAAACGCTACACCACCACGGGGGTGTTGCGTAATGCATG TCAGTTTTCCGGTGACAATTCGTGTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1059:106996..107623+

>mRNA_F-serratus_M_contig1059.581.1 ID=mRNA_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=CDS|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1059:106996..107623+ (Fucus serratus male)
ATGCTGCTGCTGCCGAGGCCGCGCGGGTGGCTGCTCGGACACTACGGACT
CACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTAACGGATCTTTTAATAG
AGCCCATGACATTCGAGAGGCTTTCAAAACTCGGCGAGAAACCGACATTG
CGACTTCGGCTACGAGAAGAAGAGCGCCTTCGAGCTCTCGCGGGGGAAAC
GCTACACCACCACGGGGGTGTTGCGTAAATGCTGCTGCTGCCGAGGCCGC
GCGGGTGGCTGCTCGGACACTACGGACTCACGTTCGTGTGTCTTAGCCGC
GCAAAGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCT
TTCAAAACTCGGCGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAG
AGCGCCTTCGAGCTCTCGCGGGGGAAACGCTACACCACCACGGGGGTGTT
GCGTAA
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