mRNA_F-serratus_M_contig1059.581.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1059.581.1
Unique NamemRNA_F-serratus_M_contig1059.581.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.570e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:   51 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 102
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BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.840e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:   49 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.890e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:  115 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 166
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.160e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:  222 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.250e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:   49 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.940e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:  396 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.950e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:  113 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.990e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE RL  LA  T
Sbjct:  392 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 443
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-10
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREE 200
            GLTFVCLSRAKRL DL++EPM+F+R+  LG  PT++ RL+EE
Sbjct:   49 GLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
[Close]
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.550e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:   75 GLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTLRLRLREEERLRALAGET 230
            GLTFVCLSRAKRL DL++EPM+F+R+  LG   T++ RL+EE RL  LA  T
Sbjct:   46 GLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTT 97
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1059.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE7.570e-1363.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE2.840e-1263.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE2.890e-1263.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE1.160e-1163.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE1.250e-1163.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE1.940e-1163.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE1.950e-1163.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE1.990e-1163.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE1.960e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE2.550e-1061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1059contigF-serratus_M_contig1059:106996..107623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size291
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1059.581.1prot_F-serratus_M_contig1059.581.1Fucus serratus malepolypeptideF-serratus_M_contig1059 107362..107589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.2573056-UTR-F-serratus_M_contig1059:106995..1070181622928891.2573056-UTR-F-serratus_M_contig1059:106995..107018Fucus serratus maleUTRF-serratus_M_contig1059 106996..107018 +
1690962617.7680538-UTR-F-serratus_M_contig1059:106995..1070181690962617.7680538-UTR-F-serratus_M_contig1059:106995..107018Fucus serratus maleUTRF-serratus_M_contig1059 106996..107018 +
1622928891.299139-UTR-F-serratus_M_contig1059:107355..1073611622928891.299139-UTR-F-serratus_M_contig1059:107355..107361Fucus serratus maleUTRF-serratus_M_contig1059 107356..107361 +
1690962617.7770078-UTR-F-serratus_M_contig1059:107355..1073611690962617.7770078-UTR-F-serratus_M_contig1059:107355..107361Fucus serratus maleUTRF-serratus_M_contig1059 107356..107361 +
1622928891.334488-UTR-F-serratus_M_contig1059:107589..1076231622928891.334488-UTR-F-serratus_M_contig1059:107589..107623Fucus serratus maleUTRF-serratus_M_contig1059 107590..107623 +
1690962617.7973242-UTR-F-serratus_M_contig1059:107589..1076231690962617.7973242-UTR-F-serratus_M_contig1059:107589..107623Fucus serratus maleUTRF-serratus_M_contig1059 107590..107623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.3204594-CDS-F-serratus_M_contig1059:107361..1075891622928891.3204594-CDS-F-serratus_M_contig1059:107361..107589Fucus serratus maleCDSF-serratus_M_contig1059 107362..107589 +
1690962617.7860663-CDS-F-serratus_M_contig1059:107361..1075891690962617.7860663-CDS-F-serratus_M_contig1059:107361..107589Fucus serratus maleCDSF-serratus_M_contig1059 107362..107589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1059.581.1

>prot_F-serratus_M_contig1059.581.1 ID=prot_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=polypeptide|length=76bp
MLLLPRPRGWLLGHYGLTFVCLSRAKRLTDLLIEPMTFERLSKLGEKPTL
RLRLREEERLRALAGETLHHHGGVA*
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mRNA from alignment at F-serratus_M_contig1059:106996..107623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1059.581.1 ID=mRNA_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=mRNA|length=628bp|location=Sequence derived from alignment at F-serratus_M_contig1059:106996..107623+ (Fucus serratus male)
TGAAGAAACGAGCCGACGACCTCGTAAGCGCTGTTTGAATTTTCGAAAAT
AAAAACTGTGTTTCAAACAGTCTGAACTTTCTGTTATCGAGACAACTGCT
GTGAACTTGAACTCATATACCGCAATTTGTGGCTTTTGTTCTACACTGTT
GTAGGCTCTCCATGAAGAAACGACCCGACGGCCTGGTAATCACAGAGGTG
TCGTACGATGTACTAAATTGTTGAATAGGGGCATTAGACTTCTGTCTCTT
CTCCGACCAGTTTTTCATCATCACACAGCCCGCTGGAAATATTCCCAAAT
TAATACGTCGCTCGCCCTCTCTGCGATGTACCTATACGGCTTTGCACTTC
CGTTGCACAGCCGCCGATGCTGCTGCTGCCGAGGCCGCGCGGGTGGCTGC
TCGGACACTACGGACTCACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTA
ACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCTTTCAAAACTCGG
CGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAGAGCGCCTTCGAG
CTCTCGCGGGGGAAACGCTACACCACCACGGGGGTGTTGCGTAATGCATG
TCAGTTTTCCGGTGACAATTCGTGTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1059:106996..107623+

>mRNA_F-serratus_M_contig1059.581.1 ID=mRNA_F-serratus_M_contig1059.581.1|Name=mRNA_F-serratus_M_contig1059.581.1|organism=Fucus serratus male|type=CDS|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1059:106996..107623+ (Fucus serratus male)
ATGCTGCTGCTGCCGAGGCCGCGCGGGTGGCTGCTCGGACACTACGGACT
CACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTAACGGATCTTTTAATAG
AGCCCATGACATTCGAGAGGCTTTCAAAACTCGGCGAGAAACCGACATTG
CGACTTCGGCTACGAGAAGAAGAGCGCCTTCGAGCTCTCGCGGGGGAAAC
GCTACACCACCACGGGGGTGTTGCGTAAATGCTGCTGCTGCCGAGGCCGC
GCGGGTGGCTGCTCGGACACTACGGACTCACGTTCGTGTGTCTTAGCCGC
GCAAAGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGAGGCT
TTCAAAACTCGGCGAGAAACCGACATTGCGACTTCGGCTACGAGAAGAAG
AGCGCCTTCGAGCTCTCGCGGGGGAAACGCTACACCACCACGGGGGTGTT
GCGTAA
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