mRNA_F-serratus_M_contig1058.580.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1058.580.1
Unique NamemRNA_F-serratus_M_contig1058.580.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1058.580.1 vs. uniprot
Match: UPI001CF29BBA (uncharacterized protein LOC114969674 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF29BBA)

HSP 1 Score: 115 bits (288), Expect = 5.980e-26
Identity = 78/229 (34.06%), Postives = 123/229 (53.71%), Query Frame = 1
Query:   13 RKTTMDRATSILFTLVILRTGMQLNLASVLFGLSASTAGRVFVTWLCLLHSV-HFPMIRMPTWKEVVDGCPSSVREQGMGEVAVMIDCTEFSTERMWLEDAVHYFFSTYKQRPTAKFVVGITTSGAFCYVSEGYGGRMTDNAVVRKSGLLEVLREQKYPKGAEVLADRGFQGLERDLV-KIGMYLSTPPSSRGRLDETRFSQEDAEFATEAANVRIHVERAIGGLKEWK 693
            RK T       + TLV LR G+  NL S LFG+S ++  + F TW+C L  +    ++  P+ +++    P S ++     V ++IDCTE   E+     A    +S YKQ  T K +VGI+  G F +VS+ + G  +D  + ++SGLL++L       G  ++AD+GF    RDL  K  + L+ PP  +G+    + S +  +   + A+VRIHVERAI  LK ++
Sbjct:  253 RKRTFSPFEEFILTLVRLRLGLLTNLLSDLFGISTASVSKTFRTWICFLGKILKDTLLIWPSKQQISSNLPKSFKK--FPSVRIIIDCTEIYIEKPTTPSAQRATWSNYKQHNTIKALVGISRDGMFTFVSKLWTGNSSDRHITQQSGLLDLLES-----GDSIMADKGFN--IRDLATKKRVLLNVPPLCKGK----QLSTKAVKTTRQIASVRIHVERAIERLKNFR 468          
BLAST of mRNA_F-serratus_M_contig1058.580.1 vs. uniprot
Match: UPI00148ACDDB (uncharacterized protein LOC117689614 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148ACDDB)

HSP 1 Score: 115 bits (289), Expect = 6.410e-26
Identity = 83/257 (32.30%), Postives = 135/257 (52.53%), Query Frame = 1
Query:   25 MDRATSILFTLVILRTGMQLNLASVLFGLSASTAGRVFVTWLCLLHSVHFPMIRMPT---WKEVVDGCPSSVREQGMGEVAVMIDCTEFSTERMWLEDAVHYFFSTYKQRPTAKFVVGITTSGAFCYVSEGYGGRMTDNAVVRKSGLLEVLREQKYPKGAEVLADRGFQGLERDLV-KIGMYLSTPPSSR----GRLDETRFSQEDAEFATEAANVRIHVERAIGGLKEWKYVVQPVAWDGLDLIETAVQLCAALTN 771
            + R    L TL+ LR  +   + + +FG+S +   ++FVTW+  ++ V  P+++ P+    K+ +  C  SV      +   +IDCTEF  ER     A    +S+YKQ+ T K +V +T SGAF ++S  +GG ++D  +    G L++++      G EV+ADRGF  L RDL+ +    L+ PP ++    G+      +  D     + A +RIHVERAIG LK +K +   +      L    V++CA L+N
Sbjct:  287 LTRFHEFLITLLRLRLALPTFVIADIFGISCTRVSQIFVTWINYMNVVFSPLLKRPSAKCMKKFLPKCFKSV----FPKTTCIIDCTEFFIERPSTPTAQSRTYSSYKQKNTFKALVAVTPSGAFMFISNLWGGNVSDRYITEHCGFLDIVKP-----GDEVMADRGF--LIRDLLLERRATLNIPPFTKKCSWGK--GKHLTAHDVLKTKKIAKLRIHVERAIGRLKNYKILSHTIPLKIKPLCNQIVKVCAFLSN 530          
BLAST of mRNA_F-serratus_M_contig1058.580.1 vs. uniprot
Match: UPI00148AC44B (uncharacterized protein LOC105344497 isoform X1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AC44B)

HSP 1 Score: 110 bits (276), Expect = 1.380e-25
Identity = 78/257 (30.35%), Postives = 128/257 (49.81%), Query Frame = 1
Query:    1 SRRKRKTTMDRATSILFTLVILRTGMQLNLASVLFGLSASTAGRVFVTWLCLLHSVHFPMIRMPTWKEVVDGCPSSVREQGMGEVAVMIDCTEFSTERMWLEDAVHYFFSTYKQRPTAKFVVGITTSGAFCYVSEGYGGRMTDNAVVRKSGLLEVLREQKYPKGAEVLADRGFQGLERDLVKIGMYLSTPPSSRGRLDETRFSQEDAEFATEAANVRIHVERAIGGLKEWKYVVQPVAWDGLDLIETAVQLCAALTN 771
            +R +R   +D     L T++ L+ G+ +   +  FG+S     + F TW+CLL+     +   P+        PS  +      + V++DCTE   +R       +  FS YK   T KF+VGIT  G   +VSEG+GGR++D  ++ ++ LL+++ E     G  V+AD+GF  ++  L K G  L+ PP    R    +F+ ++     E A +RIHVERAIG +K +      ++   + L      +C  +TN
Sbjct:   15 TRSRRCMALDPIDQFLATMMRLKVGLYVQDMAERFGVSVGAFSQYFSTWVCLLYKELKELNPFPSRDVSQRNIPSCFKS--FPSLRVILDCTEIFIQRSSSLVNQNQSFSNYKHHTTLKFLVGITPFGVISFVSEGFGGRVSDRQMIERTCLLDLIEE-----GDGVMADKGFT-IKDMLEKKGSTLNIPPF---RSSSNQFTTQEVLDTQEIAKLRIHVERAIGRVKNFHIFDGVLSLSLVPLSSQMFSVCCWITN 260          
BLAST of mRNA_F-serratus_M_contig1058.580.1 vs. uniprot
Match: A0A2B4S2B2_STYPI (THAP-type domain-containing protein n=2 Tax=Astrocoeniina TaxID=123757 RepID=A0A2B4S2B2_STYPI)

HSP 1 Score: 114 bits (285), Expect = 2.110e-25
Identity = 84/245 (34.29%), Postives = 128/245 (52.24%), Query Frame = 1
Query:   43 ILFTLVILRTGMQLNLASVLFGLSASTAGRVFVTWLCLLHSV-HFPMIRMPTWKEVVDGCPSSVREQGMGEVAVMIDCTEFSTERMWLEDAVHYFFSTYKQRPTAKFVVGITTSGAFCYVSEGYGGRMTDNAVVRKSGLLEVLREQKYPKGAEVLADRGFQGLERDLVKIGMYLSTPP-SSRGRLDETRFSQEDAEFATEAANVRIHVERAIGGLKEWKYVVQPVAWDGLDLIETAVQLCAALTN 771
            ++ TLV LR G+     + +F +S S   R+F TW+C L +V    ++  P+ +EV    P S  +       V+IDCTE   E+     A    +S YK   T K +VGIT SG F ++S+ + G  +D  + ++SGL ++L E     G  V+ADRGF  +   L K  +YL+ PP S +G+    + S+   +F  + A VRIHVERAI  LK++K     +      L +  + +C AL N
Sbjct:  286 LIVTLVRLRLGLMGRQLADIFSVSQSQLSRIFTTWVCFLATVLKEVLVLWPSQEEVKGNLPRSFSKYP--NTRVIIDCTEMYIEKPTSPYAQRATWSEYKGHNTIKALVGITPSGYFSFLSKFWTGSTSDRKITQESGLKDLLEE-----GDSVMADRGFN-IRDILTKRKVYLNIPPFSKKGK----QLSRAATKFTRQIARVRIHVERAIERLKDFKIFQGNLPLTLAPLADQMLIVCGALCN 518          
BLAST of mRNA_F-serratus_M_contig1058.580.1 vs. uniprot
Match: A0A8D8VWA9_9HEMI (Hypothetical protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8VWA9_9HEMI)

HSP 1 Score: 110 bits (275), Expect = 2.520e-25
Identity = 73/227 (32.16%), Postives = 121/227 (53.30%), Query Frame = 1
Query:  103 FGLSASTAGRVFVTWLCLLHSVHFPMIRMPTWKEVVDGCPSSVREQGMGEVAVMIDCTEFSTERMWLEDAVHYF--FSTYKQRPTAKFVVGITTSGAFCYVSEGYGGRMTDNAVVRKSGLLEVLREQKYPKGAEVLADRGFQGLERDLVKIGMYLSTPPSSRGRLDETRFSQEDAEFATEAANVRIHVERAIGGLKEWKYVVQPVAWDG--LDLIETAVQLCAALTN 771
            F LS +  G +F   L  +       I  P+  +V    P   R +   +V  +IDC E   ++    +++H    +S YK+  T K+++  T  G  C++SEG+GGR +D+ +++KSG L+++       G +++ADRGF+ +E+D+ + G  L  PPS  G   ET FS+ DA    + A +RIHVER IG L+ +  +   V  D   + L++   ++  ALTN
Sbjct:   59 FDLSPTYLGTIFRNVLPRVAECLEKFIFWPSKSQVFLNLPIPFRAR-FSKVVAIIDCFELEIQKP--SNSLHQAMTWSAYKKCNTLKYLIACTPDGTCCFISEGWGGRTSDSVILKKSGFLDLIEP-----GVQIMADRGFKHVEKDIAEKGAMLVRPPSVVGT--ET-FSKADARLTKQIAALRIHVERVIGRLRNFNILTPHVCLDNKLVPLVDAITKVVCALTN 274          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1058.580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF29BBA5.980e-2634.06uncharacterized protein LOC114969674 n=1 Tax=Acrop... [more]
UPI00148ACDDB6.410e-2632.30uncharacterized protein LOC117689614 n=1 Tax=Crass... [more]
UPI00148AC44B1.380e-2530.35uncharacterized protein LOC105344497 isoform X1 n=... [more]
A0A2B4S2B2_STYPI2.110e-2534.29THAP-type domain-containing protein n=2 Tax=Astroc... [more]
A0A8D8VWA9_9HEMI2.520e-2532.16Hypothetical protein n=1 Tax=Cacopsylla melanoneur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1058contigF-serratus_M_contig1058:64837..65607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score122.9
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog7668.SPU_024105-tr
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CQK3@1,2S458@2759,3A7MN@33154,3BSRK@33208,3DFYF@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size771
Cds size747
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.1927042-CDS-F-serratus_M_contig1058:64836..655831622928891.1927042-CDS-F-serratus_M_contig1058:64836..65583Fucus serratus maleCDSF-serratus_M_contig1058 64837..65583 -
1690962617.7502024-CDS-F-serratus_M_contig1058:64836..655831690962617.7502024-CDS-F-serratus_M_contig1058:64836..65583Fucus serratus maleCDSF-serratus_M_contig1058 64837..65583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928891.212883-UTR-F-serratus_M_contig1058:65583..656071622928891.212883-UTR-F-serratus_M_contig1058:65583..65607Fucus serratus maleUTRF-serratus_M_contig1058 65584..65607 -
1690962617.7597923-UTR-F-serratus_M_contig1058:65583..656071690962617.7597923-UTR-F-serratus_M_contig1058:65583..65607Fucus serratus maleUTRF-serratus_M_contig1058 65584..65607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1058.580.1prot_F-serratus_M_contig1058.580.1Fucus serratus malepolypeptideF-serratus_M_contig1058 64837..65583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1058.580.1

>prot_F-serratus_M_contig1058.580.1 ID=prot_F-serratus_M_contig1058.580.1|Name=mRNA_F-serratus_M_contig1058.580.1|organism=Fucus serratus male|type=polypeptide|length=249bp
MDRATSILFTLVILRTGMQLNLASVLFGLSASTAGRVFVTWLCLLHSVHF
PMIRMPTWKEVVDGCPSSVREQGMGEVAVMIDCTEFSTERMWLEDAVHYF
FSTYKQRPTAKFVVGITTSGAFCYVSEGYGGRMTDNAVVRKSGLLEVLRE
QKYPKGAEVLADRGFQGLERDLVKIGMYLSTPPSSRGRLDETRFSQEDAE
FATEAANVRIHVERAIGGLKEWKYVVQPVAWDGLDLIETAVQLCAALTN
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mRNA from alignment at F-serratus_M_contig1058:64837..65607-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1058.580.1 ID=mRNA_F-serratus_M_contig1058.580.1|Name=mRNA_F-serratus_M_contig1058.580.1|organism=Fucus serratus male|type=mRNA|length=771bp|location=Sequence derived from alignment at F-serratus_M_contig1058:64837..65607- (Fucus serratus male)
TCGCGGAGGAAAAGGAAGACAACGATGGACAGGGCCACCTCTATCCTCTT CACACTTGTAATACTACGGACCGGTATGCAGTTAAACTTAGCGTCCGTTC TCTTCGGTTTGAGCGCCAGTACGGCAGGGCGTGTGTTTGTGACGTGGTTG TGTCTTTTACATAGCGTCCACTTCCCTATGATAAGGATGCCAACTTGGAA GGAAGTTGTCGACGGCTGTCCTTCCTCTGTTCGCGAACAAGGAATGGGCG AGGTCGCAGTGATGATTGATTGCACTGAATTCTCTACCGAAAGGATGTGG CTGGAAGATGCAGTCCATTACTTCTTTTCGACGTACAAGCAACGGCCCAC TGCAAAATTTGTGGTAGGGATCACAACGTCCGGAGCGTTTTGTTATGTAT CAGAAGGATATGGGGGGCGCATGACTGACAACGCCGTGGTGAGAAAATCG GGTCTCCTTGAAGTTCTCAGGGAACAGAAATACCCGAAGGGAGCGGAGGT ACTTGCTGATAGAGGGTTCCAGGGACTCGAGAGAGACCTCGTCAAGATAG GTATGTACCTCTCCACACCCCCTTCTAGCCGCGGTCGCCTTGACGAGACT CGATTCTCGCAAGAGGACGCAGAGTTTGCAACAGAAGCAGCTAATGTACG AATCCATGTGGAACGGGCTATCGGTGGACTGAAAGAGTGGAAGTATGTCG TGCAACCAGTTGCCTGGGATGGACTGGACTTGATCGAAACGGCCGTGCAG CTTTGTGCGGCTCTCACTAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1058:64837..65607-

>mRNA_F-serratus_M_contig1058.580.1 ID=mRNA_F-serratus_M_contig1058.580.1|Name=mRNA_F-serratus_M_contig1058.580.1|organism=Fucus serratus male|type=CDS|length=1494bp|location=Sequence derived from alignment at F-serratus_M_contig1058:64837..65607- (Fucus serratus male)
ATGGACAGGGCCACCTCTATCCTCTTCACACTTGTAATACTACGGACCGG
TATGCAGTTAAACTTAGCGTCCGTTCTCTTCGGTTTGAGCGCCAGTACGG
CAGGGCGTGTGTTTGTGACGTGGTTGTGTCTTTTACATAGCGTCCACTTC
CCTATGATAAGGATGCCAACTTGGAAGGAAGTTGTCGACGGCTGTCCTTC
CTCTGTTCGCGAACAAGGAATGGGCGAGGTCGCAGTGATGATTGATTGCA
CTGAATTCTCTACCGAAAGGATGTGGCTGGAAGATGCAGTCCATTACTTC
TTTTCGACGTACAAGCAACGGCCCACTGCAAAATTTGTGGTAGGGATCAC
AACGTCCGGAGCGTTTTGTTATGTATCAGAAGGATATGGGGGGCGCATGA
CTGACAACGCCGTGGTGAGAAAATCGGGTCTCCTTGAAGTTCTCAGGGAA
CAGAAATACCCGAAGGGAGCGGAGGTACTTGCTGATAGAGGGTTCCAGGG
ACTCGAGAGAGACCTCGTCAAGATAGGTATGTACCTCTCCACACCCCCTT
CTAGCCGCGGTCGCCTTGACGAGACTCGATTCTCGCAAGAGGACGCAGAG
TTTGCAACAGAAGCAGCTAATGTACGAATCCATGTGGAACGGGCTATCGG
TGGACTGAAAGAGTGGAAGTATGTCGTGCAACCAGTTGCCTGGGATGGAC
TGGACTTGATCGAAACGGCCGTGCAGCTTTGTGCGGCTCTCACTAACATG
GACAGGGCCACCTCTATCCTCTTCACACTTGTAATACTACGGACCGGTAT
GCAGTTAAACTTAGCGTCCGTTCTCTTCGGTTTGAGCGCCAGTACGGCAG
GGCGTGTGTTTGTGACGTGGTTGTGTCTTTTACATAGCGTCCACTTCCCT
ATGATAAGGATGCCAACTTGGAAGGAAGTTGTCGACGGCTGTCCTTCCTC
TGTTCGCGAACAAGGAATGGGCGAGGTCGCAGTGATGATTGATTGCACTG
AATTCTCTACCGAAAGGATGTGGCTGGAAGATGCAGTCCATTACTTCTTT
TCGACGTACAAGCAACGGCCCACTGCAAAATTTGTGGTAGGGATCACAAC
GTCCGGAGCGTTTTGTTATGTATCAGAAGGATATGGGGGGCGCATGACTG
ACAACGCCGTGGTGAGAAAATCGGGTCTCCTTGAAGTTCTCAGGGAACAG
AAATACCCGAAGGGAGCGGAGGTACTTGCTGATAGAGGGTTCCAGGGACT
CGAGAGAGACCTCGTCAAGATAGGTATGTACCTCTCCACACCCCCTTCTA
GCCGCGGTCGCCTTGACGAGACTCGATTCTCGCAAGAGGACGCAGAGTTT
GCAACAGAAGCAGCTAATGTACGAATCCATGTGGAACGGGCTATCGGTGG
ACTGAAAGAGTGGAAGTATGTCGTGCAACCAGTTGCCTGGGATGGACTGG
ACTTGATCGAAACGGCCGTGCAGCTTTGTGCGGCTCTCACTAAC
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