mRNA_F-serratus_M_contig1056.571.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1056.571.1
Unique NamemRNA_F-serratus_M_contig1056.571.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1056.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1056contigF-serratus_M_contig1056:98407..102474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size275
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1056.571.1prot_F-serratus_M_contig1056.571.1Fucus serratus malepolypeptideF-serratus_M_contig1056 98407..102474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.4382393-CDS-F-serratus_M_contig1056:98406..985281622928888.4382393-CDS-F-serratus_M_contig1056:98406..98528Fucus serratus maleCDSF-serratus_M_contig1056 98407..98528 +
1690962616.4675045-CDS-F-serratus_M_contig1056:98406..985281690962616.4675045-CDS-F-serratus_M_contig1056:98406..98528Fucus serratus maleCDSF-serratus_M_contig1056 98407..98528 +
1622928888.457477-CDS-F-serratus_M_contig1056:100441..1005571622928888.457477-CDS-F-serratus_M_contig1056:100441..100557Fucus serratus maleCDSF-serratus_M_contig1056 100442..100557 +
1690962616.4784906-CDS-F-serratus_M_contig1056:100441..1005571690962616.4784906-CDS-F-serratus_M_contig1056:100441..100557Fucus serratus maleCDSF-serratus_M_contig1056 100442..100557 +
1622928888.4739964-CDS-F-serratus_M_contig1056:102439..1024741622928888.4739964-CDS-F-serratus_M_contig1056:102439..102474Fucus serratus maleCDSF-serratus_M_contig1056 102440..102474 +
1690962616.489743-CDS-F-serratus_M_contig1056:102439..1024741690962616.489743-CDS-F-serratus_M_contig1056:102439..102474Fucus serratus maleCDSF-serratus_M_contig1056 102440..102474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1056.571.1

>prot_F-serratus_M_contig1056.571.1 ID=prot_F-serratus_M_contig1056.571.1|Name=mRNA_F-serratus_M_contig1056.571.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MAPLSPSKAFCIPGTAGEDDEEEKEDEEVVSPASKKKRFRTHLDRLNGGG
SEQRSSSAGGRVARCFPVQQDQSALLALTGLRIVVPPPPGK
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mRNA from alignment at F-serratus_M_contig1056:98407..102474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1056.571.1 ID=mRNA_F-serratus_M_contig1056.571.1|Name=mRNA_F-serratus_M_contig1056.571.1|organism=Fucus serratus male|type=mRNA|length=4068bp|location=Sequence derived from alignment at F-serratus_M_contig1056:98407..102474+ (Fucus serratus male)
ATGGCCCCTCTTTCCCCCTCGAAGGCGTTCTGCATACCAGGGACAGCGGG
GGAGGATGATGAAGAAGAGAAGGAAGATGAGGAGGTAGTCAGCCCTGCCT
CGAAGAAGAAGCGCTTTAGGACGTGAGTATTGTCATTCATCGCGGCCTCG
ATAGTGTTGTTAATAGTTATTTGTATACACTGTGTCACAATTTACATATA
TATATATATGTATAATATATATAGTCTGAGCGCCTCTTCTCCTTCCGGCA
GGTGACCCAGAGTTGGCGAGGATGGAGGTTTTCGAAGAAAAAATTGAATT
GCTCGAGCTCAAAATAAACTAGTTTTTACTTTACTAGCCCCCCCCCCCCC
CTTTCCTGACTAGTTATTAATGAAAAATTGCGGTTGAAGAGTTCTGCGAG
CGGGGGACGATAGGAAAAAAAACGAAATAAACGCACGCTCACGCACATAC
GCACATACGCACACTCAGACAAAAAAAAAACAGCAAACAAATAACCAACC
AAAACGTTGGGTATTGCTACCCATATTATTTGTTGGTGTTGCTGACGGCC
TGTGGCAATTCTAGCTCTAATGGCTAAAACCTGAGTTTTTTTCAGGTTGA
CCATCTGAGTTCTAGCTGGAAGATGAAACTGCCGCAGGCGGATGTACCGC
ATGAACAGTGTGTATACTGTACCGAGGATATTATGATGCTCGTACGTACC
GCTATTGAACATCCGCCGATCCGTAAAAATATATATTTATTATTAGTATT
GGCTGTAGTTTTCAGTACATATCCCGTACGAAGTTATCACGGTGTAAATC
AGTACCTTCGAGACTAGAGAAATCCGTAAAACCTTTCGCAAAAATGCGAA
CATTACATACTACTAATAGTACATTAACAGTGTGAGAACGCCCCCCCCCC
CCCCCCCCCAAAGAATCGGGGATTCCGACACACTAATACGACGTATTATT
TAATAACACCGTGATGAGAACGCCCCCCCCCCCCAAGAATAGGGGATATC
GGCAGACTGTTATAAAAGAGTACCGGAATGAATCCGGTCATTATTTCTCT
TTTTATTCTAGCTATCAATATCAAGAGATGGCTCGTACGAAAAAACTAGA
AATATCAGGGGAGTTTTACGTAGTTGGGAGGGGTTTTTTCAGCCGTTAGG
ACCGTAGGACCATTTTATTTTATTTTTGTTGGCATCAAACTCGCTAAAAA
ACATTTTTCATTTTTTTTTTTTTTTTTTAAGATTTGTAATTGATATACGT
AGCCGATGGAGGCCAACGCTTGTTCCCAACCACCCAACGTTGAAAAAACG
AACGCCCTCCAATCTCCGTGCGATGGCTCCGTGGCGTGTATTTAGAATGT
CCCTCCCTCAAGACGCGAACGTGTTATCTGCCGCGCTCTCTGTAGAGCAT
AGTGCATCAGACAAGTACCATGGCAGCTCACGAATCCCAATACAGAGCTA
GGCTGAGACTAGATTCGCACTAGGAACGCATGTAGGCGTTAACCCCCCCC
CCATATTTTTTATTTTTCTGTAGACACTAAAGTCATGTAAAAAAATAATA
TTTCCAAGGGGTCTGTCTGCGTGGGTGCAACGTATGGTCGAGATTCCGCT
TAATGTTGCTGCCCACGCGGGTTTCAGGTATTTAGTAGAGTAGAGCATGC
TGCATACATATCTACCCTCTTACGTGCCGTGAGGTTTTTTCTCCAATTTC
TACATGTTGCCTGTGTACGAGTAGTACAATCGTTCAATAGTTAACACGGC
TTTTATCCTCCTCCTATCTCGCAAAATATGGCGCATATTATATACGGAGT
ATTTTGTTTGACAGATGTGTAGATCTATCGAGTTGCATCCTATAGTTGCG
CCGTCGAGAGATTTTCGGTCCAAATTTATGTGTGTAGATAATGTCTCTTC
CGGGCTGTCATCTCCCAGTGTCGATGTCCTTATCCCCTCTCATAAAAACG
CCATCCTGATGTCTAAGAAACCTCAGCGCGCGCGGTCAAAATCGAATGTG
GTCGTTGTCTTTTGTCTGCTCTTCTTTGACTCCAGGCATCTCGACAGACT
AAATGGAGGTGGAAGTGAACAGAGGTCTTCCAGCGCGGGGGGACGCGTCG
CGCGATGCTTCCCCGTCCAGCAGGATCAGTCAGCACTTCTCGCCTTGACC
GGTGTGTATGTATGGTTATCACATATAGCAGAGTATGGATCAACCGAGTA
AGATTACCGATCCTGCTCGTGGTCAGCTGAACAAGGAAAATGAATATTTC
CCTGTCCCCGTTCGCGTCTGAGAATTTGGTCTCGCGAGACGGGTTTGGCC
GTCCCGCCCCGCGTCAGCTCGCTCATTCTCCACACACGGAATGAATCGAC
AAAGAAAGAAGGGTGCACACACTCCAAGGGGTCGTGTACTGCCCGATCGA
CCAGTCGGTTTCGTTCCAGCAGTAGTACGTATTTTCCATATCAAGCAAGA
CTTCAGACAGAGTCGTTACATTACAGTACATTACAGTAGAGTTGTGTAGG
GGGCCATCAGTATGCCGTACGTGGCGCACGAGGTTCGACTACAGTATGCT
ATCCTGGAATATGGCTCCGTTGGGTGGGAGGGGCATGGAGGATGGGGGGG
GTACATGGAGGATTTGGGGGCATGCAGGATGAGGGAATGATTTTAAACTA
CCCCCATTAGCTCTCATTGATTACATACCGTTGTGTATAGTGGGCCTGTT
TGTGTGAACAACATATCTCCCGAGCGTGCGTTGTCTTTATTAATAATTAA
GAAATTGAAGGAGGGATTCTCTGTCACCGACAATGACTTGTTGCTTTGGC
TTGTCGCGTGCGTTCGTGCAAGCTATCTAGCCCCTTTTTTACTTTTATAT
TTTTTACTGCCCTCCCCATGTTGCAGTACATATCAATAGTGTCATTACTC
CCGGGAGGAAGGTGGTGTCGTGTAAAATAGGCATGTTCCTTTAGGGGACC
AATTAGTTTTTCCCTCTACATGTGCTCGGAGAAGTTGGGCGGCTGTTTTT
GCTTTTCAAGGTTGTTCCTCTGAGTAATAGTGATTTTTATGTGCATGCCG
TTTGCTTTTCTCGTTTTAATGGTAGTATTAATAGTAATAATGTATATCAA
TTATAGCATTAATAGCTGTCCACGAATCGGATTGGCAGCCTGAATATAGC
ACAAAAGCTCTACTGGGCCCAATCGATCCATGTAGAAAACTCACACACAC
TCAACACACACTCCCCGAGTTGTATTGAGTGGGAGGGGGGGGCGGGAGGG
TTAACGCGGTTCGCAAGCGCTGAGGCATCTAAAGTCTAAACTGAGACGAG
AGCAGTGCCATCAACGCGTCTGTCCACGAGTGTGCCTGCGCACGAGGCTT
CGGGTGATGGCGATCCCCTTGGGCTATCTGGGCGGAGGACTCAACCGCGC
GGAGCACCAAGGCGATCGACATCATCCGAGACGTCACGATGGCAATACCC
TGGACCCAGTTTTTACGGCTGACCAGATACGGGAGAGGGCGATTGCGAAC
CGCCGGAAGCCTCCTCCTTTTTTGAGGGGAGGTTGGCGTCTGTGCCGTTG
ATTGGTGGAAAGTGGTGTTGTACACCGCACTTGTTCTTTTGATAGAGCCG
TATTGCCTTAGTACTGGGTTGGAGGACGATGAGGATTACCAGCCCCAACA
CTGCCAGAGCAACCTCAAGGTACAGCCTCAAGAGGACATGCGTAAAGGTT
TTGTTTTTCAGCATGAGCTTGTCACGAATCAATGTTCTACGAGACGATTC
GGGTACGAGTTCGCACTCTAGTTTTGTAATTCATCGTTCAACGGTTTTCA
TGTTAGTGGTGGGATGTCTATCCGGGGAGATCCCCCCCCTCTTTCAAAAG
GTAACAAAGCAGGTCACCTGTAGTAATAAACAGTATTTTCCGAACACATA
TGAACTGTCTACCGGCTTTAAAAAAATCTTATCAAACATATTAATCCTCG
ATAGGGGCTGCTCTGATATCGCCCCCCCCCCCTGATCCACCCGTGCGAAT
GAACGCGTGTGTTGATTCGGCATCGACTGAAAGGGCTGCGGATCGTGGTC
CCACCTCCTCCCGGTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1056:98407..102474+

>mRNA_F-serratus_M_contig1056.571.1 ID=mRNA_F-serratus_M_contig1056.571.1|Name=mRNA_F-serratus_M_contig1056.571.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig1056:98407..102474+ (Fucus serratus male)
ATGGCCCCTCTTTCCCCCTCGAAGGCGTTCTGCATACCAGGGACAGCGGG
GGAGGATGATGAAGAAGAGAAGGAAGATGAGGAGGTAGTCAGCCCTGCCT
CGAAGAAGAAGCGCTTTAGGACATGGCCCCTCTTTCCCCCTCGAAGGCGT
TCTGCATACCAGGGACAGCGGGGGAGGATGATGAAGAAGAGAAGGAAGAT
GAGGAGGTAGTCAGCCCTGCCTCGAAGAAGAAGCGCTTTAGGACGCATCT
CGACAGACTAAATGGAGGTGGAAGTGAACAGAGGTCTTCCAGCGCGGGGG
GACGCGTCGCGCGATGCTTCCCCGTCCAGCAGGATCAGTCAGCACTTCTC
GCCTTGACCGGCATCTCGACAGACTAAATGGAGGTGGAAGTGAACAGAGG
TCTTCCAGCGCGGGGGGACGCGTCGCGCGATGCTTCCCCGTCCAGCAGGA
TCAGTCAGCACTTCTCGCCTTGACCGGGCTGCGGATCGTGGTCCCACCTC
CTCCCGGTAAGGGCTGCGGATCGTGGTCCCACCTCCTCCCGGTAAG
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