mRNA_F-serratus_M_contig1056.570.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1056.570.1
Unique NamemRNA_F-serratus_M_contig1056.570.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1056.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1056contigF-serratus_M_contig1056:85717..89936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size279
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1056.570.1prot_F-serratus_M_contig1056.570.1Fucus serratus malepolypeptideF-serratus_M_contig1056 85779..89869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.273558-UTR-F-serratus_M_contig1056:85716..857781622928888.273558-UTR-F-serratus_M_contig1056:85716..85778Fucus serratus maleUTRF-serratus_M_contig1056 85717..85778 -
1690962616.4181113-UTR-F-serratus_M_contig1056:85716..857781690962616.4181113-UTR-F-serratus_M_contig1056:85716..85778Fucus serratus maleUTRF-serratus_M_contig1056 85717..85778 -
1622928888.3409922-UTR-F-serratus_M_contig1056:89869..899361622928888.3409922-UTR-F-serratus_M_contig1056:89869..89936Fucus serratus maleUTRF-serratus_M_contig1056 89870..89936 -
1690962616.457981-UTR-F-serratus_M_contig1056:89869..899361690962616.457981-UTR-F-serratus_M_contig1056:89869..89936Fucus serratus maleUTRF-serratus_M_contig1056 89870..89936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.2849486-CDS-F-serratus_M_contig1056:85778..857851622928888.2849486-CDS-F-serratus_M_contig1056:85778..85785Fucus serratus maleCDSF-serratus_M_contig1056 85779..85785 -
1690962616.4276853-CDS-F-serratus_M_contig1056:85778..857851690962616.4276853-CDS-F-serratus_M_contig1056:85778..85785Fucus serratus maleCDSF-serratus_M_contig1056 85779..85785 -
1622928888.2955637-CDS-F-serratus_M_contig1056:86851..869791622928888.2955637-CDS-F-serratus_M_contig1056:86851..86979Fucus serratus maleCDSF-serratus_M_contig1056 86852..86979 -
1690962616.4383826-CDS-F-serratus_M_contig1056:86851..869791690962616.4383826-CDS-F-serratus_M_contig1056:86851..86979Fucus serratus maleCDSF-serratus_M_contig1056 86852..86979 -
1622928888.309368-CDS-F-serratus_M_contig1056:89854..898691622928888.309368-CDS-F-serratus_M_contig1056:89854..89869Fucus serratus maleCDSF-serratus_M_contig1056 89855..89869 -
1690962616.448124-CDS-F-serratus_M_contig1056:89854..898691690962616.448124-CDS-F-serratus_M_contig1056:89854..89869Fucus serratus maleCDSF-serratus_M_contig1056 89855..89869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1056.570.1

>prot_F-serratus_M_contig1056.570.1 ID=prot_F-serratus_M_contig1056.570.1|Name=mRNA_F-serratus_M_contig1056.570.1|organism=Fucus serratus male|type=polypeptide|length=50bp
MFRRKQDTHRGNSRRRAHSRVNSTSQQETIQCHETRADRCCHGYRASRG*
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mRNA from alignment at F-serratus_M_contig1056:85717..89936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1056.570.1 ID=mRNA_F-serratus_M_contig1056.570.1|Name=mRNA_F-serratus_M_contig1056.570.1|organism=Fucus serratus male|type=mRNA|length=4220bp|location=Sequence derived from alignment at F-serratus_M_contig1056:85717..89936- (Fucus serratus male)
ATCGAGTCAACTTCTTACCGTGGGCAGTCGCAGTTCTTGGAGGTTGTAGG
GATCTTTCGGCTGGACTATGTTTCGCAGAAAGGTACGACTGTCGTATTAT
GTGACATGCGCAGTGATGACTCCCTTCTGGTCGAGCTGCCACCTTTCAAA
TAGTCAACTCTCCCGACGTTGCCGTGTACTTGATTATAGTAAATCTGGAA
ATCTAGTACCAGGTATGATGAACGCATCTAAACCTTCAACCTTCTCAGGC
CAACCGCAATGGGACCACAAAGATCCAGATATGAAACACAAATAATTGCT
TGTATTTCTGCTGTATTTTATTTTTTCTATGTGCCCCGCTATGGGCTGGG
CGAATAAATGGACAAAATACAAAAACGAGATGGAGGTCCGTGTGGAATAC
TGTCCATCCAAGTCTCTAGCCCCCCAGTTTTGGAATTTGAAAATGAAGCG
AGAGATTCCATCATTGGGTAGCAATCATAGCGACTAACAACGCCATCAGC
CAGACCAGACCACAGCGATGCCGGATACAGTGGACCAGTGCTCAATCACG
CTTGCTCCGATGGCCACCGCAGCCGCGATCTCTCCATCGGATATGTTTTC
GACATCCATCCCGTCCACACATCTCGTCCTCAAATGCGGGCGGGCCTATT
TACCGCCCATGTGTGTTTTTGTCGAACCACTACACAAGGACGCTCCCCTT
TTGTCCCCCCCTTTTTTGATCCTTTTTGGTTTTCCCGGGCGCCCCCCAAC
ATTTGGTTCTCCAAGGCGTTTTTAAAGAAAAATCAGAACAGCACCTAGAC
TTTTTGAGCATCCCCCGCCCCGTAGGGAGAAGAAATGTCAAAACGTTTAG
GCGGGGTCAAAGGCTGCAGTGTTAAACAGGTTACCCAATGCATATAACAT
TGGGTCAATTGCCCGATACCATACTCATACTCGAGTAGAGTATGGAGAGT
TGTACTCAATCTATGAGTATTTTGAGTCGAGTTTGGGAAGTTGTACTCAA
GCTTTGAGTATTTTGAGTCGAGTATGGGAAGTTGTACTCAAGCTGTGAGT
ATTTTGAGTCGAGTATGGAAAGTCATACTCGATACTCGACTCATCGTTGA
GTATTTGCCCGATACCGTACTCATACTCGAGTAGAGTATGGAAAGCCGTA
CTCAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGCGGTACTCAAGCTA
TGAGTATTTTGAGTAGAGAATGGAAAGCGGTACTCAAGCTATGAGTATCT
TGAGTCGAGTACATACTCGAGTAGAATACTCGAGTAGTTGAGTAGTACTT
TTCTCACCACAACCTAAAAAACTAAAAATTAAAGTACATATCACCCTACT
TCAATTCACCCCCTGCATTTTCACCCGCCCTCCCCGTTGGTCATAGCGGT
GAAAGGCTGAACGCTGCACCCCTGGTCGGTTGTCAACCGCCACCGATGGC
CTGTTTGCAAGCACTCGCACTAATCACTAATATATAGCAAAAGAGAGATA
AAAAACCAAAATATTATACTTTCTATGGTGGTGATTTTGATATTGCACGA
CCGCAAAAGCAGTACAAAACAAAAAACAAAACAACTAGCTGCCCTTCGCA
TGTCCTAGTTGATGTCCATGCCACTGGGAGTGGGAGGCGCGTTGTTGACC
AGCGGGTCAATCGACGCCTCTGCGTCCAGAAGATCCTTGTCCTGTCCGTC
GAACCTCGCGCGGAGGTGTTTGCGGATGTCCTCCGATGCGATCTGGGGGA
TGTCCTTGTACGCCGGAATGGAGCTGTAGTTCGCCTTCAGGAACATCACC
ATTTTCACCCAGTAGGTCTCAATACGGCTGCGGTTCGGCACGAGGAGGTT
GCCGCAGCCGCTGAAGTCTCGCTCGACCTGAGATGCAGAGGCCTGATTCC
CGAAGGTCTGCTGCGCGACCGGCGTGAGTAAGGGGAAGGCATGCTTTCCT
TCTTCGCCCAATACGTCAGCACTTGTACCTACATACCCTAGGTTGTTCCT
ACTGTCTGATTTTGTTTGTGTTCCCTATTTTCTTACCAGGTATTTATAGC
GACAATGTCCTTGCTGGCTACTTTCTTGTCCGTTGTCTTTTATATATTTT
TTCCCTGCTTATCTCGGAAGGTATTACAGGTTTTTGATCTGGTTTGGTTC
CGTCTATCTTGTGACCACGGCTGGATTCGTAGCGGATCAGTTAATGTGAG
ATAAACAACAACAACAACAACAACAGTACTGCTACTTGTATACATGTGAG
GTGTCAAAATACAATAACAGCTACTTGTACCTACATACAGCAGTACAGCT
ACTTGTATGTATGTGAGGTGTCAAAAATGACGTCACGAAGACGAAGACAT
GTACTCAAACTTGAGTAGAGTATTGAGTATTGAGTACTTTGAGTCGAGTA
TGGAAAGTCATACTCAAGCTTTGAGTATTTTGAGTCGAGTATGGAAAGTC
ATACTCGATACTCGACTCATCGTTGAGTATTTGCCCGATACCGTAGTCAT
ACTCGAGTAGAGTATGGAAAGTTGTACTCAAGCTTTGAGTATTTTGAGTC
GAGTATGGGAAGTTGTACTCAAGCTTTGAGTATTTTGAGTCGAGTATGGA
AAGTCATACTGGAAAGTCATACTCGATACTCGACTCATCGTTGAGTTTTT
GCCCGATACCGTACTCATACTCGAGTAGAGTATGGAAAGCGGTACTCAAG
CTTTGAGTATTTTGAGTCGAGTATGGAAAGCGGTACTCAAGCTATGAGTA
TGTTGAGTAGAGTATGGAAAGCGGTACTCAAGCTATGAGTATGTTGAGTC
GAGTACATACTCGAGTAGAATACTCGAGTACGCCATGAGTAGTACTCGAC
TCAACACAACAAAAAATATTGTGTACATACAAAGCCAAAACATGGTATAT
TAAACAGTTATGCCTCAACCTACCCACATAAATTGTTGTTTCTCGGGTTC
CAAACAGCAAGACACTCACAGGGGGAACAGCAGGAGAAGAGCCCACAGCA
GGGTAAACAGCACGAGTCAGCAGGAGACCATACAATGCCACGAGACTCGA
GCTGACCGTTGCTGTCATGGATATCGAGCAAGCAGGTAAACGAGCGAGGC
AGGTCTGTGCGTAGCCTCCCTTGTAGAGGCGCCCTAGGAAGAACAGGGGT
GCCACCGAGCCCTTTGTTGTTCTTCTGGCGCCTAGATACTCCCCGGTAGC
GTGTGTGCTCTCGTCGCTCGTCATCACCGCAGCCCGACGCGTGCGTGACA
CGTGGCAAGATTGAATGTGTTGCCGTTGGTATACCCCGGGTAGTGTGCAG
TGTTTGCCTGTGTATATAGACTATTCCCGTCATTTCTGTTTGCCCCTGGC
CGTCTGGCCGCTTGTGTTACCAATAACAGTTGGGCTCAGTGCGCCTGTAG
AAAAAAACAACACACGCACGCACAAAAAAAGCAATACCCTCCCAGTATCA
AAGCTTTGACGCAACACTGGGAGCGGGCGGCTTCGATTGTGTGCTTGTCC
AAGCTCTGATACTACATGACGCCCCAAACCCGACTCTGGATCACCCTGAC
GTGTGTGTACTCTAACGGTGTGCACTCGTTTTTTGGATGAGTATATACTC
TAAGTATCGGAGTCTTGGCACACCCTTTAGACTGACTTTCCAGGCTCGAT
TGCTCCTCAACCAAGAGGACGTGAGCACCGACCGATACGTCTAAATAAAG
CTCTCGACGAGATCATCAATCTTTCGAAAATCGCCCTTTTCGGCATTGAA
TTAGCACCCTCTTGGTTGTGGAGCAGTCGAGTCTGGAAAGTCAGTCTAGG
GGGTGTGCCAAGACTCCGATACTTACGGTACGACCTCGTCGCCCGAGTGG
AGTGCGGTATGTAGTGGATGACCTCGCAGTTTCACGTAGTGCGGAGGAGT
CGTGAGTTCGATTATATAGAACGTGAGCTAGTATAACTTCAACCATCGGT
TGACGAGAACCGAGGAGAGAAGGGAAGATCCTTTGTTGCCACAGGCAGGA
TGGTAGCGCTGTAATGGGTGGGATTGGTAACCTAGCACGTTGAGGTCCAT
CGGTCGTAAGTGAGAACACAAGTACTCGTGCATTAACTCTGTTGTCTCGT
ACCGAAGGGTCTTACTGAATGCTACTGCCCACCACCCGTGTGTGCTTGCA
GAGGTTAACGGCGCCTGGTGCTGTTGCTGGTGCTCAGTCCGGAGCTTTCG
CCGCACAGCAACTCATGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1056:85717..89936-

>mRNA_F-serratus_M_contig1056.570.1 ID=mRNA_F-serratus_M_contig1056.570.1|Name=mRNA_F-serratus_M_contig1056.570.1|organism=Fucus serratus male|type=CDS|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig1056:85717..89936- (Fucus serratus male)
ATGTTTCGCAGAAAGATGTTTCGCAGAAAGCAAGACACTCACAGGGGGAA
CAGCAGGAGAAGAGCCCACAGCAGGGTAAACAGCACGAGTCAGCAGGAGA
CCATACAATGCCACGAGACTCGAGCTGACCGTTGCTGTCATGGATATCGA
GCAAGCAGCAAGACACTCACAGGGGGAACAGCAGGAGAAGAGCCCACAGC
AGGGTAAACAGCACGAGTCAGCAGGAGACCATACAATGCCACGAGACTCG
AGCTGACCGTTGCTGTCATGGATATCGAGCAAGCAGAGGTTAAAGGTTAA
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