mRNA_F-serratus_M_contig1055.567.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1055.567.1
Unique NamemRNA_F-serratus_M_contig1055.567.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1055.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1055contigF-serratus_M_contig1055:153742..157203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1460
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1055.567.1prot_F-serratus_M_contig1055.567.1Fucus serratus malepolypeptideF-serratus_M_contig1055 154046..156932 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928886.2699656-UTR-F-serratus_M_contig1055:153741..1540451622928886.2699656-UTR-F-serratus_M_contig1055:153741..154045Fucus serratus maleUTRF-serratus_M_contig1055 153742..154045 -
1690962615.57009-UTR-F-serratus_M_contig1055:153741..1540451690962615.57009-UTR-F-serratus_M_contig1055:153741..154045Fucus serratus maleUTRF-serratus_M_contig1055 153742..154045 -
1622928886.342656-UTR-F-serratus_M_contig1055:156932..1572031622928886.342656-UTR-F-serratus_M_contig1055:156932..157203Fucus serratus maleUTRF-serratus_M_contig1055 156933..157203 -
1690962615.6437044-UTR-F-serratus_M_contig1055:156932..1572031690962615.6437044-UTR-F-serratus_M_contig1055:156932..157203Fucus serratus maleUTRF-serratus_M_contig1055 156933..157203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928886.2811725-CDS-F-serratus_M_contig1055:154045..1542191622928886.2811725-CDS-F-serratus_M_contig1055:154045..154219Fucus serratus maleCDSF-serratus_M_contig1055 154046..154219 -
1690962615.579128-CDS-F-serratus_M_contig1055:154045..1542191690962615.579128-CDS-F-serratus_M_contig1055:154045..154219Fucus serratus maleCDSF-serratus_M_contig1055 154046..154219 -
1622928886.2906253-CDS-F-serratus_M_contig1055:154607..1546941622928886.2906253-CDS-F-serratus_M_contig1055:154607..154694Fucus serratus maleCDSF-serratus_M_contig1055 154608..154694 -
1690962615.5904167-CDS-F-serratus_M_contig1055:154607..1546941690962615.5904167-CDS-F-serratus_M_contig1055:154607..154694Fucus serratus maleCDSF-serratus_M_contig1055 154608..154694 -
1622928886.3000474-CDS-F-serratus_M_contig1055:155250..1553741622928886.3000474-CDS-F-serratus_M_contig1055:155250..155374Fucus serratus maleCDSF-serratus_M_contig1055 155251..155374 -
1690962615.6071944-CDS-F-serratus_M_contig1055:155250..1553741690962615.6071944-CDS-F-serratus_M_contig1055:155250..155374Fucus serratus maleCDSF-serratus_M_contig1055 155251..155374 -
1622928886.3114448-CDS-F-serratus_M_contig1055:155749..1558421622928886.3114448-CDS-F-serratus_M_contig1055:155749..155842Fucus serratus maleCDSF-serratus_M_contig1055 155750..155842 -
1690962615.617457-CDS-F-serratus_M_contig1055:155749..1558421690962615.617457-CDS-F-serratus_M_contig1055:155749..155842Fucus serratus maleCDSF-serratus_M_contig1055 155750..155842 -
1622928886.3223774-CDS-F-serratus_M_contig1055:156398..1565441622928886.3223774-CDS-F-serratus_M_contig1055:156398..156544Fucus serratus maleCDSF-serratus_M_contig1055 156399..156544 -
1690962615.6268716-CDS-F-serratus_M_contig1055:156398..1565441690962615.6268716-CDS-F-serratus_M_contig1055:156398..156544Fucus serratus maleCDSF-serratus_M_contig1055 156399..156544 -
1622928886.3315365-CDS-F-serratus_M_contig1055:156671..1569321622928886.3315365-CDS-F-serratus_M_contig1055:156671..156932Fucus serratus maleCDSF-serratus_M_contig1055 156672..156932 -
1690962615.6360056-CDS-F-serratus_M_contig1055:156671..1569321690962615.6360056-CDS-F-serratus_M_contig1055:156671..156932Fucus serratus maleCDSF-serratus_M_contig1055 156672..156932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1055.567.1

>prot_F-serratus_M_contig1055.567.1 ID=prot_F-serratus_M_contig1055.567.1|Name=mRNA_F-serratus_M_contig1055.567.1|organism=Fucus serratus male|type=polypeptide|length=295bp
MLCSLAQDLARTHTNDLRARTGRTHVFLSFGRGQQLCVRDKALLVELPMP
RPLAREMNDIEAAKRSNTDTDISLGSILQDMTAVKKQRRDFLRQVKRARA
VEIEHIARQAWLFDRKPYPHPRPWKYTSISDSERERLTPEAIASDPVLEF
EEIKRVRREEATKHPTWKYASADRAFEEPPLYSCTDSFKKILGVHLNQAV
KKISRYYEAMDEGTVRLSEEKANVGADLWLMKSSLDEVHRGLRKAREIER
LKLLKRGKDGMKVAPERFGAPQGATASEQKLTLQTEDERRHSLG*
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mRNA from alignment at F-serratus_M_contig1055:153742..157203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1055.567.1 ID=mRNA_F-serratus_M_contig1055.567.1|Name=mRNA_F-serratus_M_contig1055.567.1|organism=Fucus serratus male|type=mRNA|length=3462bp|location=Sequence derived from alignment at F-serratus_M_contig1055:153742..157203- (Fucus serratus male)
CTCTCGTCGCCCGGGGCGTGTTCACATAAAACTACTTTTATTGCTAGAAG
ATTTTTCTGACGTCCTCTACACGGCACCAACAAATGCTACAATAATGGCT
CCAAAAGGGAGTGTGACAGTTATTAAGCGCTGCACGCTTGAAGTGTCCGC
AGTACTACGGGACCACAGTAGTAGTATCATACCCCTGTCATCGACTTCTC
CACTACTACACTGCTCTTTCATCAAAACACAAGCTCAAGGATAAGCAGTC
GTCATGGGATAATGCCCAACTATGCTATGTTCATTGGCACAAGATCTTGC
TCGTACTCATACGAATGATTTGAGAGCACGGACGGGCAGAACACACGTCT
TCTTATCATTCGGACGTGGACAGCAACTCTGCGTTCGTGACAAAGCTCTT
CTCGTGGAATTGCCCATGCCGCGACCACTTGCCAGAGAAATGAATGATAT
CGAGGCTGCCAAAAGAAGCAACACCGACACGGACATCTCCTTAGGATCGA
TTCTCCAGGATATGACTGCGGTCAAGAAGCAGGTGATCTTACCCCTTTGT
CGACAGTTGTGACGTTCTTGCGATCGGAGTTTGCCGCCATGGGTGAATCC
GAGGCAACATGCCCCCTCGCTTCCTTTTTCTCTTCCCAACATATCGCGGC
GGGGAGAAGCGCCGAGATTTCTTGAGGCAAGTCAAGCGAGCGCGTGCCGT
GGAGATCGAGCATATCGCCCGCCAAGCTTGGTTATTTGATCGCAAGCCTT
ACCCCCACCCAAGGCCGTGGAAATACACCTCCATATCCGACTCAGAAAGA
GAACGGTGAGCCCATCACCGTCTGCTCCGTCTGTCAGATTGAGCCCTGAA
AATTCCGGCCCACCGATTCATTCGTACAACCAGCTTTAACTAAGAGGGGT
TTTACCCAACCTCAGGCAGTTCGGAAGGCATTCGGCTGCTCACCTCAGAC
ATGAAACACTCACTATTTATAGTATATCCGTGGGACGAATCTAATCGACC
GTCAATGCGCGAGGTAAAAGGCTATATTCGAAACAAGATTTCCCCCCCTT
GAATAAGGTACCGTTAATAATATGAAATTGGCGACATACCTCCGAACGTT
TTCATTGGCCTACGATTCCTTGCTGGCAACGTTCTTATAGAACCTCGCTG
AGGAGGTAAAAACTGGAATGACACACAATTTGTTGCAACTCCGAAATGGG
TGCCAAATCTACAACACGTAGTAAGCTGGCATCGGCCCGCAATCCTCAAG
AAAACGAGTCAGAGGTCCACGGGCCCGGGGGCAATCACTCCGCAAACGAG
AAACAACACGCTGGTGTTCTCAACGTCTGCACCGCGCTTGCCTCATCTAC
GAGCGCCACAGTCTAACACCCGAGGCGATTGCGAGCGATCCTGTCCTGGA
GTTCGAAGAGATAAAGCGTGTTCGTAGAGAGGAAGCCACGAAGCACCCCA
CGTGGTGAGCGCTACACGTGGCAGAGAAAGCCTTTTCTACCCGTAAACCA
CAACAACAGAGGCAGTGAAATGAAGGTCGGTGCACATGTTTTGCAGCACT
CGTTTGTCCTTCGTGATTGGAGGCTGTTTCAATTTTGTTTGTTTTCCTCC
GTAGCATGTGTTCAGCCCTTCAAGGCTCAGTGAAGCAAAAAAACACCCGT
TGCGACATTACCTACGATATCAAACGAGAAAGCCATATCTGTCCTGAATC
CCCCACGCATTACGAAGAGTCGCTGGCTATTAAGACATAGACCCAACGGA
TCCATTCGCAACCCTTTCTGATCCCGATTCGCTGTCCACTTGTGTTCCTT
TCCGTCGTGTCTCAACTCGGCGCCGTTAGGAAATACGCGAGCGCCGATCG
CGCGTTTGAAGAACCTCCTCTGTACAGCTGTACCGACAGCTTCAAGAAAA
TTCTGGGGGTCCACCTCAATCAAGCAGTGAAGAAGATTTCTCGGTATTAC
GAGGTACGCCAGAGAACCCACCGCAGCAAGAGAAGAAAAATATTTTTGCT
TCCCCCCGATTCCTGTGCATCGGGAGATGGTTTGAGGCATGAGACCCGAT
ATTTCCGAGTCACGTGAGCGCCTTTGTCGAAAGCGAAGATTGCAACTATT
ATTAATGAAAGGTTGTTTTGAAAGGTTCAAAGGGGTTGTGATTTCCGGAA
GAACGGACCGCGGCCACCGGAGGCGTTCATGTCCGAGGCTAGGCTTGACC
CAAATATGTAGAGTTCATCATCGAGATGGCGTGCGTATGGCGCGCTGATG
TATGTGCGCTTCTTTCGCGTTCAGCGCGTTGAATTTCCCTCGGGACGACC
ATTGAACCAAGCCAGGACAGCATTGCTATTAACAAACGATGTGGTCAATC
CAAACGCCCACCTTCAAGTACCTTTTGTCGCGGTCGTCGAAACCCGTATC
TCCGGCGAACGCATCAGTAGCTAAGCCTAGAGGATCCGCCATGGTTACAC
CACCCCCAACCCCTTACAACACATTCCATTGCACGACACACCAACTTCTT
CGTGACAAGGCCATGGATGAAGGCACCGTCAGGCTTTCAGAAGAGAAAGC
GAATGTTGGGGCTGACCTGTGGCTCATGAAATCTTCCCTTGACGAGGTAA
AAAAAGTTGTTTTGTGTGTGTTATTTTTTGGGGGGAATTTCGCTGCCGCA
TTTTTTTAATGAAAATGAGCTGACACATTTGACCGTAAGAATACAGTACA
CCCATATTTCATTAAAATAGTTAGAAAAAAACGAGGTTGTATAATCATTT
TCGGATTCTCGGCTTGCACATTTTTTTTTCAGAGCCAGAGATAAGTGGGA
TGCATTTTATTTTTTTTGTTAAGTTTTTCAGACGAGCGATACCTTTGGCA
CTCTTTGTACACACCCAGCGACTCAATAGGACTTTGTCCGACAAATAAAA
AAAACGCCACCTTTTCAAAATAAATAAATAAACGTCGTAGGAAACATGAA
ACGGTAAAACATGAAACTGCACCACTCGAAACAGGTACACAGAGGACTGA
GGAAAGCTAGAGAAATCGAACGGCTGAAGCTGCTGAAAAGGGGCAAAGAC
GGAATGAAGGTCGCCCCTGAGCGTTTTGGCGCACCGCAGGGCGCGACAGC
ATCGGAGCAAAAACTAACTCTTCAGACGGAGGACGAAAGGCGACACAGCC
TGGGATGAAGAATAGGCCTTGAAGCGTCGCAAGCGAGAGCGCCATCGGAG
CCTTCGTAAAAGCGCCCTCCGATGATCCTCGCCACAAGAGACACCTCGGA
AGTTCCGACAAGGTCAATCGAATGGAACGAACGCGCGTGTGCCTTACGTT
CTAACGCGTGAGCGGCGAAGGTGAAAATCAGAGTTTCCAGCGTACGATCG
CACCAGTAGCCCGAGGACCCGTTCCCCTGTCCGGGTGCATCTTTTTTTGA
AACGAAGTTCGAACGCGTTGGTCCATCTTGGCGTTATAACTATGTTTTGT
CATCGAGGCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1055:153742..157203-

>mRNA_F-serratus_M_contig1055.567.1 ID=mRNA_F-serratus_M_contig1055.567.1|Name=mRNA_F-serratus_M_contig1055.567.1|organism=Fucus serratus male|type=CDS|length=1770bp|location=Sequence derived from alignment at F-serratus_M_contig1055:153742..157203- (Fucus serratus male)
ATGCTATGTTCATTGGCACAAGATCTTGCTCGTACTCATACGAATGATTT
GAGAGCACGGACGGGCAGAACACACGTCTTCTTATCATTCGGACGTGGAC
AGCAACTCTGCGTTCGTGACAAAGCTCTTCTCGTGGAATTGCCCATGCCG
CGACCACTTGCCAGAGAAATGAATGATATCGAGGCTGCCAAAAGAAGCAA
CACCGACACGGACATCTCCTTAGGATCGATTCTCCAGGATATGACTGCGG
TCAAGAAGCAGATGCTATGTTCATTGGCACAAGATCTTGCTCGTACTCAT
ACGAATGATTTGAGAGCACGGACGGGCAGAACACACGTCTTCTTATCATT
CGGACGTGGACAGCAACTCTGCGTTCGTGACAAAGCTCTTCTCGTGGAAT
TGCCCATGCCGCGACCACTTGCCAGAGAAATGAATGATATCGAGGCTGCC
AAAAGAAGCAACACCGACACGGACATCTCCTTAGGATCGATTCTCCAGGA
TATGACTGCGGTCAAGAAGCAGCGCCGAGATTTCTTGAGGCAAGTCAAGC
GAGCGCGTGCCGTGGAGATCGAGCATATCGCCCGCCAAGCTTGGTTATTT
GATCGCAAGCCTTACCCCCACCCAAGGCCGTGGAAATACACCTCCATATC
CGACTCAGAAAGAGAACGCGCCGAGATTTCTTGAGGCAAGTCAAGCGAGC
GCGTGCCGTGGAGATCGAGCATATCGCCCGCCAAGCTTGGTTATTTGATC
GCAAGCCTTACCCCCACCCAAGGCCGTGGAAATACACCTCCATATCCGAC
TCAGAAAGAGAACGTCTAACACCCGAGGCGATTGCGAGCGATCCTGTCCT
GGAGTTCGAAGAGATAAAGCGTGTTCGTAGAGAGGAAGCCACGAAGCACC
CCACGTGTCTAACACCCGAGGCGATTGCGAGCGATCCTGTCCTGGAGTTC
GAAGAGATAAAGCGTGTTCGTAGAGAGGAAGCCACGAAGCACCCCACGTG
GAAATACGCGAGCGCCGATCGCGCGTTTGAAGAACCTCCTCTGTACAGCT
GTACCGACAGCTTCAAGAAAATTCTGGGGGTCCACCTCAATCAAGCAGTG
AAGAAGATTTCTCGGTATTACGAGGAAATACGCGAGCGCCGATCGCGCGT
TTGAAGAACCTCCTCTGTACAGCTGTACCGACAGCTTCAAGAAAATTCTG
GGGGTCCACCTCAATCAAGCAGTGAAGAAGATTTCTCGGTATTACGAGGC
CATGGATGAAGGCACCGTCAGGCTTTCAGAAGAGAAAGCGAATGTTGGGG
CTGACCTGTGGCTCATGAAATCTTCCCTTGACGAGGCCATGGATGAAGGC
ACCGTCAGGCTTTCAGAAGAGAAAGCGAATGTTGGGGCTGACCTGTGGCT
CATGAAATCTTCCCTTGACGAGGTACACAGAGGACTGAGGAAAGCTAGAG
AAATCGAACGGCTGAAGCTGCTGAAAAGGGGCAAAGACGGAATGAAGGTC
GCCCCTGAGCGTTTTGGCGCACCGCAGGGCGCGACAGCATCGGAGCAAAA
ACTAACTCTTCAGACGGAGGACGAAAGGCGACACAGCCTGGGATGAGTAC
ACAGAGGACTGAGGAAAGCTAGAGAAATCGAACGGCTGAAGCTGCTGAAA
AGGGGCAAAGACGGAATGAAGGTCGCCCCTGAGCGTTTTGGCGCACCGCA
GGGCGCGACAGCATCGGAGCAAAAACTAACTCTTCAGACGGAGGACGAAA
GGCGACACAGCCTGGGATGA
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