mRNA_F-serratus_M_contig1055.563.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1055.563.1
Unique NamemRNA_F-serratus_M_contig1055.563.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1055.563.1 vs. uniprot
Match: A0A7S2MGS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MGS7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.090e-45
Identity = 85/195 (43.59%), Postives = 120/195 (61.54%), Query Frame = 1 
Query:  397 CRDMVESLKIVPNKSWGKASKAQQQRWELMECNSVVEGRT--VRRAEPIDCTSRPSKPS-DPLIAVCAGSTTRGVPLLEERSLALFRFLLPSLERTADCGFNYAAFIGYDVGDKFFDTDSGRAKMLSWFETEVAQPAASRGLRIELHLVRVDNKIQKPGPVFTAVTKAAYDLGANYTYRVNDDSEMITPWARKFV 972
            C++ +    + P  SWG+ +  +Q  W   +C+ +V  +   VR     DC++     S   ++AVC G+TTR V   +   LALFR+LLPS+  T DCG  Y   +GYD GD F+DT  G  ++ +WFE  +  P A RG+ I L LV+V N ++KPGPVF  +TK AYD GA+Y YRVNDD+EM +PWA+KF+
Sbjct:   50 CKEAMWKNDVRPGASWGRLTVKEQAEWGRKQCDQLVTEKAMFVRSEALPDCSAGSGDVSRQEVVAVCCGTTTRKVTGPQISKLALFRYLLPSIAHTVDCGLRYMVVVGYDKGDPFYDTYHGLTQVENWFEQHMQVPLAQRGVNISLRLVKVVNTLKKPGPVFNTITKYAYDEGADYIYRVNDDTEMASPWAKKFI 244
[Close]
BLAST of mRNA_F-serratus_M_contig1055.563.1 vs. uniprot
Match: A0A7S4FBI4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBI4_CHRCT)

HSP 1 Score: 169 bits (428), Expect = 1.100e-44
Identity = 85/209 (40.67%), Postives = 122/209 (58.37%), Query Frame = 1 
Query:  703 FIGYDVGDKFFDTDSGRAKMLSWFETEVAQPAASRGLRIELHLVRVDNKIQKPGPVFTAVTKAAYDLGANYTYRVNDDSEMITPWARKFVDALEAMGTP-YGVVGP--DSLNNHILVHDFTHRVHMDIFEGQYYPEALTDWYVDDWISRVYGRRRTIRAKNCQVEHHTGAHGQRYKADTSKAGKVDGLIEAGTKRIVLWAEAHGAEKAA 1320
            +I +D GD FFD+     ++ +W   ++ +P A+ G+  +  L++ +NKI KPGP F  +  AAY  GA+Y YRVNDD+  +  WA + +DAL  M  P  GVVGP  +  N  IL HDFTHR H+DIF   YYP   +DW++DDWI+RVY  R  +R    +VEH     G RY  D +   K++  +  G   I  W + H +++AA
Sbjct:   38 YITFDAGDPFFDSTEREVEIRAWLAAQIREPLAAMGVVFKSTLLKFENKIHKPGPAFNFMMAAAYGDGADYLYRVNDDTRFVGAWAAQAIDALRRMQPPNVGVVGPICEQGNTAILTHDFTHRTHLDIFPS-YYPPIFSDWWMDDWITRVYANR--MRRGPFRVEHVIEYQGTRYAVDFTHQAKINSELSRGQMLITQWIKTHASKRAA 243
[Close]
BLAST of mRNA_F-serratus_M_contig1055.563.1 vs. uniprot
Match: A0A0M0J2U5_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J2U5_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 2.670e-44
Identity = 91/243 (37.45%), Postives = 132/243 (54.32%), Query Frame = 1 
Query:  592 GSTTRGVPLLEERSL-ALFRFLLPSLERTADCGFNYAAFIGYDVGDKFFDTDSGRAKMLSWFETEVAQPAASRGLRIELHLVRVDNKIQKPGPVFTAVTKAAYDLGANYTYRVNDDSEMITPWARKFVDALEAMGTP-YGVVGPDSL--NNHILVHDFTHRVHMDIFEGQYYPEALTDWYVDDWISRVYGRRRTIRAKNCQVEHHTGAHGQRYKADTSKAGKVDGLIEAGTKRIVLWAEAHGA 1308
            GS  + V  LE+ +L A    LLP L            ++ YDVGDKF+D+ +    + +W +T V  P A+ G+R +  L+R +N ++KPGP+F  +  AA + GA+Y YR+NDD+E +TPW    + AL     P  GVVGP     N  I+ HD  HR H++IF+  YYP  L+DW++DDWI+ VY  R   +     V HH   HG RY  D +    + G + +G  +I  W    G+
Sbjct:   35 GSQNQSVHALEDPALQAELLLLLPELW----------VYVAYDVGDKFYDSAARELDVRAWLDTYVVGPLATAGVRAQHALLRFENALRKPGPIFNFMMAAAAEDGADYLYRINDDTEFVTPWVGLALSALRGYSPPNVGVVGPICREGNTRIITHDLVHRTHLEIFD-YYYPPILSDWWMDDWITMVYDERHFTKGPFV-VRHHVSMHGTRYSVDYAHEQMLQGELRSGRMQIQAWLAQRGS 265
[Close]
BLAST of mRNA_F-serratus_M_contig1055.563.1 vs. uniprot
Match: L1J159_GUITC (Uncharacterized protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J159_GUITC)

HSP 1 Score: 162 bits (409), Expect = 7.570e-43
Identity = 84/211 (39.81%), Postives = 121/211 (57.35%), Query Frame = 1 
Query:  571 PLIAVCAGSTTRGVPLLEERSLALFRFLLPSLERTADCGFNYAAFIGYDVGDKFFDTDSGRAKMLSWFETEVAQPAASRGLRIELHLVRVDNKIQKPGPVFTAVTKAAYDLGANYTYRVNDDSEMITPWARKFVDALEAMGTP-YGVVGPDSL--NNHILVHDFTHRVHMDIFEGQYYPEALTDWYVDDWISRVYGRRRTIRAKNCQVEHH 1194
            P +AV    T+ G        + L RF LPS+ +TA+ G++YA ++GYDVGD FFD      ++   FET++  P   RG+ ++L ++  +N ++KPGPVF  ++ +A   GA+Y YR+NDD+E  T W   ++  L +   P  GVVGP     N  IL HDF H  H+ IF G +YP  L DW++DDWIS VY      + +   V HH
Sbjct:   11 PRVAVLIPVTSHGFRWKGIEEVPLIRFCLPSISQTAELGYDYAVYMGYDVGDLFFDNQQVLQQIKVHFETQIRNPNLQRGVEMQLAVLGFENLLKKPGPVFNFLSSSAALDGADYIYRINDDTEFRTAWTSSYIRTLLSFKPPNVGVVGPTCREGNERILTHDFVHVTHLHIF-GVHYPPVLMDWWMDDWISSVYPAENFRKLRTVLVTHH 220
[Close]
BLAST of mRNA_F-serratus_M_contig1055.563.1 vs. uniprot
Match: L1IVL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVL9_GUITC)

HSP 1 Score: 169 bits (428), Expect = 5.170e-42
Identity = 104/266 (39.10%), Postives = 139/266 (52.26%), Query Frame = 1 
Query:  574 LIAVCAGSTTRGVPLLEERSLALFRFLLPSLERTADCGFNYAAFIGYDVGDKFFDTDSGRAKMLSWFETEVAQPAASRGLRIELHLVRVDNKIQKPGPVFTAVTKAAYDLGANYTYRVNDDSEMIT-PWARKFVDALEAMGTPY-GVVGP----DSLNNH--ILVHDFTHRVHMDIFEGQYYPEALTDWYVDDWISRVYGRRRTIRAKNCQVEHHTGA----HGQ------RYKADTSKAGKVDGLIEAGTKRI--VLWAEAHGAE 1311
            ++A   GST+  V         LF  LLPSL RT D  F Y   +GYD GD F+D +     +  WF   V  P+  +G+  +L  +   N ++KPGPVF  V  +A   GA++ +RVNDD+E+ +  WA K    L  M     GVVGP    DS + H  +L HDF HR HM IFE  YYP  L+DW++DDWISRVYGR RT +  +  V HHT      HG       RY  D +    ++  +  G++RI   +  E  G E
Sbjct:  273 VVATVLGSTSINVKFRTLEDNPLFTKLLPSLRRTMDGEFEYWVLVGYDTGDLFYDDERTLTSLKKWFRRNVEAPSKEKGIDCKLIFLNFTNVLRKPGPVFNFVAASAVSDGADFLFRVNDDTEIASWGWASKMSSTLAGMSPSLLGVVGPSGRGDSSSEHRYMLTHDFVHRTHMRIFET-YYPPVLSDWWMDDWISRVYGRSRTRKLGDVLVVHHTEVVASFHGTDAGDPVRYAVDWAHKKYLEHEVHKGSRRIKEFVRGECEGGE 537
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1055.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2MGS7_9STRA1.090e-4543.59Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4FBI4_CHRCT1.100e-4440.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0M0J2U5_9EUKA2.670e-4437.45Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
L1J159_GUITC7.570e-4339.81Uncharacterized protein (Fragment) n=2 Tax=Guillar... [more]
L1IVL9_GUITC5.170e-4239.10Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1055contigF-serratus_M_contig1055:29551..38192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.5
Seed ortholog evalue2.1e-114
Seed eggNOG ortholog2880.D8LIA3
Hectar predicted targeting categorysignal peptide
EggNOG OGs2B66X@1,2S0KP@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_001400.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1659
Cds size1386
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1055.563.1prot_F-serratus_M_contig1055.563.1Fucus serratus malepolypeptideF-serratus_M_contig1055 29821..38189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928886.9889386-UTR-F-serratus_M_contig1055:29550..298201622928886.9889386-UTR-F-serratus_M_contig1055:29550..29820Fucus serratus maleUTRF-serratus_M_contig1055 29551..29820 -
1690962615.673508-UTR-F-serratus_M_contig1055:29550..298201690962615.673508-UTR-F-serratus_M_contig1055:29550..29820Fucus serratus maleUTRF-serratus_M_contig1055 29551..29820 -
1622928887.1107926-UTR-F-serratus_M_contig1055:38189..381921622928887.1107926-UTR-F-serratus_M_contig1055:38189..38192Fucus serratus maleUTRF-serratus_M_contig1055 38190..38192 -
1690962615.765793-UTR-F-serratus_M_contig1055:38189..381921690962615.765793-UTR-F-serratus_M_contig1055:38189..38192Fucus serratus maleUTRF-serratus_M_contig1055 38190..38192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928887.0038848-CDS-F-serratus_M_contig1055:29820..300271622928887.0038848-CDS-F-serratus_M_contig1055:29820..30027Fucus serratus maleCDSF-serratus_M_contig1055 29821..30027 -
1690962615.6875525-CDS-F-serratus_M_contig1055:29820..300271690962615.6875525-CDS-F-serratus_M_contig1055:29820..30027Fucus serratus maleCDSF-serratus_M_contig1055 29821..30027 -
1622928887.02003-CDS-F-serratus_M_contig1055:30338..304051622928887.02003-CDS-F-serratus_M_contig1055:30338..30405Fucus serratus maleCDSF-serratus_M_contig1055 30339..30405 -
1690962615.6982114-CDS-F-serratus_M_contig1055:30338..304051690962615.6982114-CDS-F-serratus_M_contig1055:30338..30405Fucus serratus maleCDSF-serratus_M_contig1055 30339..30405 -
1622928887.0341885-CDS-F-serratus_M_contig1055:31306..314371622928887.0341885-CDS-F-serratus_M_contig1055:31306..31437Fucus serratus maleCDSF-serratus_M_contig1055 31307..31437 -
1690962615.7107809-CDS-F-serratus_M_contig1055:31306..314371690962615.7107809-CDS-F-serratus_M_contig1055:31306..31437Fucus serratus maleCDSF-serratus_M_contig1055 31307..31437 -
1622928887.0466785-CDS-F-serratus_M_contig1055:32300..323961622928887.0466785-CDS-F-serratus_M_contig1055:32300..32396Fucus serratus maleCDSF-serratus_M_contig1055 32301..32396 -
1690962615.7188914-CDS-F-serratus_M_contig1055:32300..323961690962615.7188914-CDS-F-serratus_M_contig1055:32300..32396Fucus serratus maleCDSF-serratus_M_contig1055 32301..32396 -
1622928887.059379-CDS-F-serratus_M_contig1055:32933..330621622928887.059379-CDS-F-serratus_M_contig1055:32933..33062Fucus serratus maleCDSF-serratus_M_contig1055 32934..33062 -
1690962615.7297134-CDS-F-serratus_M_contig1055:32933..330621690962615.7297134-CDS-F-serratus_M_contig1055:32933..33062Fucus serratus maleCDSF-serratus_M_contig1055 32934..33062 -
1622928887.073074-CDS-F-serratus_M_contig1055:33491..336991622928887.073074-CDS-F-serratus_M_contig1055:33491..33699Fucus serratus maleCDSF-serratus_M_contig1055 33492..33699 -
1690962615.7382317-CDS-F-serratus_M_contig1055:33491..336991690962615.7382317-CDS-F-serratus_M_contig1055:33491..33699Fucus serratus maleCDSF-serratus_M_contig1055 33492..33699 -
1622928887.088971-CDS-F-serratus_M_contig1055:34146..346061622928887.088971-CDS-F-serratus_M_contig1055:34146..34606Fucus serratus maleCDSF-serratus_M_contig1055 34147..34606 -
1690962615.7482922-CDS-F-serratus_M_contig1055:34146..346061690962615.7482922-CDS-F-serratus_M_contig1055:34146..34606Fucus serratus maleCDSF-serratus_M_contig1055 34147..34606 -
1622928887.0999925-CDS-F-serratus_M_contig1055:38101..381891622928887.0999925-CDS-F-serratus_M_contig1055:38101..38189Fucus serratus maleCDSF-serratus_M_contig1055 38102..38189 -
1690962615.7565005-CDS-F-serratus_M_contig1055:38101..381891690962615.7565005-CDS-F-serratus_M_contig1055:38101..38189Fucus serratus maleCDSF-serratus_M_contig1055 38102..38189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1055.563.1

>prot_F-serratus_M_contig1055.563.1 ID=prot_F-serratus_M_contig1055.563.1|Name=mRNA_F-serratus_M_contig1055.563.1|organism=Fucus serratus male|type=polypeptide|length=462bp
MCMRTKVLLAVFLLVNALVLVNLRVPLFLVGRNRVWRSRESSWGADGTPE
RLGSAGVKQEGALPAIQRPERGKVGVVFPNVYEGSGGGAGKADSGGTVGA
GEGEGGDVGGVESVKLLVEAPAERQEAEARECRDMVESLKIVPNKSWGKA
SKAQQQRWELMECNSVVEGRTVRRAEPIDCTSRPSKPSDPLIAVCAGSTT
RGVPLLEERSLALFRFLLPSLERTADCGFNYAAFIGYDVGDKFFDTDSGR
AKMLSWFETEVAQPAASRGLRIELHLVRVDNKIQKPGPVFTAVTKAAYDL
GANYTYRVNDDSEMITPWARKFVDALEAMGTPYGVVGPDSLNNHILVHDF
THRVHMDIFEGQYYPEALTDWYVDDWISRVYGRRRTIRAKNCQVEHHTGA
HGQRYKADTSKAGKVDGLIEAGTKRIVLWAEAHGAEKAASDIATDWLDGK
TATKEQARDIP*
back to top

mRNA from alignment at F-serratus_M_contig1055:29551..38192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1055.563.1 ID=mRNA_F-serratus_M_contig1055.563.1|Name=mRNA_F-serratus_M_contig1055.563.1|organism=Fucus serratus male|type=mRNA|length=8642bp|location=Sequence derived from alignment at F-serratus_M_contig1055:29551..38192- (Fucus serratus male)
GCCATGTGTATGAGGACCAAGGTACTCTTGGCGGTGTTTCTCTTGGTGAA
CGCTCTCGTGCTCGTGAATCTCCGCGTGCCTCTCTTCCTAGGTGAGAAAT
CCAAAGGAATGCTGGCTGTAGTACGAACAACGATTTGCTGTTTTGCGCTG
CGAGGGCAACATGTCCTAGGCGATCGCATGGTGTGTTTCCTGCCATTCGA
GAGCGGACGAAAGTGTTTTCTCATAAGCATTCTGTAAATAACTTTCGATG
GCACGCTAATGTTGATTCCGTCTATGTCTTCAGCTTGAACAGGATTATCC
GATATACTGCAATAATCAGTACAGGCTGGGCTGGCCAAGACGCTGTACAC
ATGGCGGAATGAGATTTGCCACGCGGTTTTTACGAATTTTCACCAGAAAA
ATTGACACGTTATTAAGACCGCTCTTGCGGAGAGGACCACCACTACACAT
TTGGTTTTAGTTTTTTTTTCGTAAGTTATGGTATGATAGCCGGATATAAG
TAGATGTGGGAATATTTGTTTCGCGACGAAATGATGGAAAAAATAGCAAT
AAATAAAAATGTGCAGTGGTGGTCCTCTCCGCAAGAGCGGTCTAAATCAC
GTGTCAAAATTTCAGGTGAAAAATCGTAAAAACCGCGTGGCAAATCGCGA
TACCCCCACATTTCCTCAGTTCACTTATGTTTTGTATCGGAATCTTTACG
AGGCCGCAACTCTTGATAGAAAACGAGGCGAGCCTTGTAACTACCACCCA
CGCTCTTGCGGTGCTCCTGGATACGTGTACACCAAATTTCAGCTTGATCC
GTGACACTTTTTTTCATACTGATTTTAGTATAGGAAGTATCCTCCACTAC
GCCGCCAATTGGTCATTGTTTACCAAAATCAACTCAGATTCGAAAAATTC
CGGCGCCTGCGCTTCCCTTTTGCCGTATAGGAGCAGCCTCCAAATTTCAA
GCTTTAACTCGTAGAAACGGCAGAGCGAGACATGAACGAACAGAAGTCAG
TTTCTTGGCCAGTCCAGCCTGAGTATAGAGAATGGGCAGGCATACGCGGA
ACGGGACGGCTGAACCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGAG
GACAGGGAAACATTCATTTTCCCCGTTTAGCCGACCACGAGCAGGATTGG
CAACCTTACCCGGTTGATCCATACTCTGCTATATGTGATAACCATACATC
GATACTCGGTGCGGGACTGCTTTCGGCAGTCTCGCAAGGCCAAATTCTCA
GGCGCGAACGAGGACAGGGAAAGCTGACCACGTGCAGGATTGGCAACCTA
CTCTTGCTAAATGTGTACCCACGCATATATACATATTCTAATGCACAAGC
AGCATCATAACGCTGCTATTTTTTCGTGAAAATTACTGTCGCACTAAACT
GTGCCAGGGTGGTATGGACGACCTCGACTGACAAATACTTCGTACCCAAT
TAACTGTTCACGAGTGCTGGTCGCCCCGGTAGCTCAGAGGTACCTCGTAA
CCCTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGTATTTTTC
TCACCAAAAACAAAAAAAATAAAATAAAAATGTCCAACGGGTGGAGAACG
ATTAATTCGTTAGTACACAAAATTCGACATCACGGTCGACGAGGGAAAGG
AATGGCTAAATCCTTCTCGCGATAAAAATTAAGGCACGCACCGCAGAAGG
AAGGCGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGCTGG
TACGTCCATTGATGTCCAGAATAGATGGGAAGAAAACACTCACACACACA
CACTGACGAAAATCTGAAGGCATCCACAGTTAGTATTTTAATAGTCCGAG
GGGGGAGCGAAATCTTTCGAAAACGTTTACCAGTAGCTGGGAACACTCCA
AAATTGAACATGTTTCAGGATTGTCTTGACTCTTTCTCTAAGTACAAGCA
ATGCTCGAGTCTCCAAGTTCTCACCAATTCAGACGCCGGTACTTTCAACA
TTCCTACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAACATTGAT
TAGTCCATGGTGACCTGCCAAGGCAGCACCCGTTCGGAATTACCTTGAGG
TTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACG
CAATTGCGTGACCCGATAAACTCGGGACTGACCCAATGGCGTATGGCGGT
TTCATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGC
ACCAGATTCAGCCTGAGTATGGAGATGACCAGGCTGACGCGGGACGGGAC
GGGACGGGACGGGACGGGACGGGACGGGACGGGACGGGACGGTAGAACCC
GTCACGTGAGATCAAATTCTCAGGCCGACGCACGGGGACAGGGGAATATT
ATTTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTATCCGAT
TGATCCATACTGTGCTATATGTGATGACCATACATACATACATACATACA
TACAAACTGTGGACGCTCATATGTATGGTCAAACATACAGCAAGGTTATA
CCAACAGGTACCACACTCGTTGCGCCGACCCCTTCGTCTTTCCTCTCCAT
GGTTGCAGCTGTGTAGCTGTAGGTACTTGTCCGAGTACGGTACAGCATGT
GGAAGTGAGATTGCTTGTATCACCGGCAGGCACCTGTTGAAGCATTTTAA
TATTTTAGTCCTACAGTTACACTCGTACGAGTAGATTAGGTTGATAGAAG
CTCTACTGCAGAGCTTGTAGGCTAACTATCGTTCGGACTTCAAAACAACG
CTTCTAAACATTCAACGCATTGTCCTTGCAACTGAAGAAACTGCGGCGAC
ACAGCAAGTCAGCCATAGACCTATCAAATGTCAATCCCGCACGTGGTCAC
GAAGAGGTACAAAGGTCAACGGGTCACATCAGGGTGACAACCCGCTACTC
AGACCAACAGGGATCCAAATCGCGACAAAATCCTTGCCAAGAAGTCGAAG
CAACCGCAAGCATCGGAAACTTATCGGTGTCATGACGATGTCTTTGGGGT
GTGAACTACAGCTTTTTGCATATCTTTGGGTGTGAACTATGATACGATTT
TTTACGTTCTGGAGTGCTGCCAGTATTTCAGAATCTGAGTTACAAGCTAC
AGAGAAGACTGTCTGATGTGCTGCCCGATGAACAAAGTCATCAAAAGTGA
TAGAAAAAGTTTTCTATCTTTTGGAGGGTTACACGAAGACTAGTTATGGA
CCCTTTACAACAAATACGTCCGACTAATGTCAAAACGATTCATCAAATCT
CCTTACTCCATATTCGAGAACAACCTCGATCGACTCGGATTGTTGTCGCC
TACCCACGGTCAGCGTTCTCAGCAACGATGCGGACAGCTCACGCTCCAAT
CAGTTTTGATCAACAAGACCAAGTTTTCTCGAGGCCACACATCATGCAGC
AATAAGAAAAAATGAAATACAGAGGTCCATTTAAATATGTACGAAACTAA
TTCTACCCTCCCCCTGGACAGACATTGTGCCACAAAAATTCCCGACAGCT
CCCGCCATCATCCCCCCTCCCCCATTCCCGCGGCAGTGGGTCGGAACAGG
GTCTGGCGGTCTCGGGAGTCAAGCTGGGGGGCAGATGGTACTCCGGAGAG
GCTGGGTTCCGCGGGCGTTAAGCAGGAGGGCGCGTTGCCCGCCATCCAAA
GGCCTGAGCGGGGAAAGGTTGGGGTTGTGTTTCCAAACGTCTACGAGGGA
TCTGGAGGTGGGGCGGGAAAGGCAGACAGCGGAGGGACGGTAGGGGCCGG
CGAGGGCGAAGGGGGGGATGTTGGTGGGGTGGAATCGGTAAAGCTGTTGG
TGGAGGCCCCGGCGGAACGCCAGGAGGCGGAGGCGAGGGAGTGCAGGGAC
ATGGTTGAGTCCCTGAAGATCGTGCCGAACAAGAGCTGGGGGAAGGCGAG
CAAGGCCCAGCAGCAGCGGTGGGAGTTGATGGAGTGCAACAGCGTGGTGG
AGGGAAGGACGGTGCGCCGAGCCGAGCCGATCGACTGCACGTCACGGTGA
GCGCGTTCGACGCCGTCGAGTAGCGCCCGCTGCTCCTAACATATATTTGC
GTGTGAAAAATGTACTCCGAGTATACGTTATACGATACTATCGCGTTCCG
GTATCAGTATGGTCTCGTCTCATTGGGGAGTTCAGCACTTTTACTAGTGC
GGCGTACTGTGGTTAAAGCCTGCCCCCCCCCCCCCCATCATCTCTACGAT
ATCATTGTTGAGTGTTCTGCGCATCCTAAGCGCCAACCCATACTCTACAG
AAAGGAGTGATTTTTATCGTGTGGCCTCGGCTCACAACCAATATATATAT
ATATATATATTACATATATATATATTATATTATATATATATATTATATAA
CCCCTAGGTACACTTTGCATGAGTAGAACGACATATAGCAAAACGTCATT
ATCTTCTGTCCGCATCGGTCACGCGAAATGAATGCGGCACCAGACCGTCC
AAGCCGAGCGACCCGCTGATCGCCGTGTGCGCGGGGAGCACGACGAGGGG
CGTGCCCCTCCTGGAGGAGCGGTCGCTGGCGCTGTTCCGGTTCCTCCTGC
CGTCCCTGGAGCGCACGGCAGACTGCGGCTTCAACTACGCGGCTTTCATC
GGCTACGACGTGGGGGACAAGTTCTTCGACACAGACTCGGGCAGGGCAAA
GGTGAGTGTTGAGATACTCAGGGGCGGTTGGGGGGGAGGGGTGGGGGGGA
GAAATATTCTAAGCGAAAGAAGGAAAGGGGGCGCAACGCTGCAGGGTTAC
AGGGACTGTAGAAAGAGTGTAGCTCCTTTGCCGCGTCTTGTGATGACGAG
AGGTTTTCGTAGCAGCAACTTTTATTGGTGTAGTCTATCATTGCGAGGAC
CGGATACGATAAGCCTGGATTGATTAGATTTACAAGGCCGAACTGCGCGG
TCATGTGCTATTGAAATATATACGCACCTGTAGGCTCTATAAATACAGAT
ATACATCCTTCCATACCCGTAGGCTTGACCTCCTTCCGCCGTTTTTTCCT
GGGAATATCTTGAGAGGGGGTACATATTACCCTTGCCTTTCTCCCCCCCG
CCCCCCGCACGTCAATCGTCAATCGTCAAGATGTTGTCCTGGTTCGAAAC
AGAGGTGGCGCAACCGGCAGCGTCGCGCGGCTTGAGAATAGAGCTGCATT
TGGTCCGCGTCGACAACAAGATACAGAAGCCCGGACCCGTGTTCACCGCC
GTCACGAAGGTTTCCACAATACTTTGAAGCGTTTCTCTTCATAAATGTTT
TTTTTTGGTGCGAGGTGGGGGGGGAAGAGGGGGGGAGCTTTGTCGATCAT
GGAAGGGAGCCAATACAAATTGGACGGCTGAGGTCGTATCTCGTCAGCTG
TGCCCTTCGTTATGAGTAATTTATACTGTAATACGTTAGCGTTATGACGC
CGTCTCACGAGACAAGCATTTTGCTTGTTTGATTGGTTTTTGTTTTGCCC
CCACAGCAGTCCCAACGATCCACGGTTGTTGCAACTGGACTAAGTTTACG
CATATATACATGTAGAGCACTGTTATATGAACGATTGTACCAGTAGCAAG
CTGACGGCCAAAACATCTGTCAAGTGTTTGATCCTATTTTTTAGCCTGTG
AACGTTTCTTGTTTGCCCCCGTGTGGCCCTCACCGCTGCATCCCTCCCCG
CCTCCCTCTAACATTTCACCCTCGCCGGTGTGTGTGTGTGTATGTGTGTG
TGCGCGCGCGTTCGTTTCTTCCCGTGTAATGGTTATCCGTCTTAAGGCCG
CGTACGATCTGGGCGCGAACTATACCTACCGCGTGAACGACGACTCTGAG
ATGATTACCCCGTGGGCCCGGAAGTTTGTCGACGCGCTGGAGGTGGGAAA
GAAGCGAGAGACGACGAGAGGGAGCTTTTGAGAGAGCTTTGAACCACCGT
CGAGGGAGAATGAGAGGGGAGGGGGGGGGGCGCCCGAACTGGCTATTTGC
TGCCACTCACAGTAAACACTGAGAAACGCTCACATACTTTTTTTTCTTCA
AAACAATATATAAATACCCGCAATAACAGACACACACACAGCCTCATGAA
AGGGTTTCATGGCAGCAATCATTGGTTTGATATCCCCTCGCGGGGCCCTT
GGGGGAAGTTTTTCGTTGTTTTATCTCACATGAACTGATCCGCTACGAAT
CCAGCCGTGAGTAGCTTTGGATGGTCACCGGTAGCACGACCGTGTCGCGT
ATTGCGCGGTCATGTGCAATTTCCTAAATACACCCATACAAAAACCACGT
CATAATACTTGACTAACTGTGCGTTGCTGTCTTGGAGAACCGACCCCTTG
TTTACAGCCCGCCTGTTGTTTTTTAAAGAGTCTGTTGTCATCCGAGACCC
GAGATTATCATCATTAAGCTGTCGGACCTGTTTCTCCCCCCCTCCTCCCC
CCTCCCCTCCGACTGCAACCTTCCTGACGGCCCACGGATCGCTTCCCCCC
CCCCCCCCCCAAACGCCTCCCCCTTGACTTGAAAACCACCACTCTCCTCT
GGTTTTTCGAGCTTTCGAGCAAAACTTTCGGTGCTGTAGCTTTGCCCCCG
ACTGCTTCAGCCACTCGATCCCATCGTATCCGTATAATACGCCTCCCCCC
CCCCCCCCCACGACCCTCGCACAACCTCTCTTCTGTCTCTCTCTCTCTCT
CAATCTTTCTTTCTATATTTGTGGGTCATCTTCATCGTCATCGTCATCCA
TCCAGGCGATGGGCACTCCCTACGGAGTCGTGGGTCCCGATTCATTGAAC
AACCACATCCTGGTGCACGACTTCACTCATCGGGTTCACATGGACATCTT
CGAGGGGCAGTACTATCCGGAGGCCCTCACTGATTGGTGAGATTAAGCAA
AAGCGCGTTCTCTGGATGAGAGGGCGGCAGCAGGGGGGGGGGGGGCGTTT
GTTTTTTTTTTTTTTTGTTTTTTGTTTAGTTTGTTTTCTTCTTCTTTTTT
ACGATGGAAGATACGCGAATGTAAGTTGGTTCAAGAGCCAGTCTTAGGAT
GGGCAGGAATACATACTGACACGAGGTGTAGACTCGTTCGCATGTAGTAT
TGATGCAATAGTGTTAATTACAAAACACACACACACACACTCTTCCCTTG
ACACCCCAAACGTCATGTAACGTGACGGCTTTTCGTCGCGGAAGATGATA
CACAGGACGAGATAGAGCTGATTTAAGTCAAGTCAGGAAACAGCAAAGGA
GAAAAAACAAGGGAAAAGAGAGAATTAATAACTTAATCCCTTCCCCCCCC
CCCCGCGCAAAAAAATAAGGGTGTCAAAATGTACCAGAAAGTATTAGGGG
GGGGGTGGAAGAACGTAGTACGTAACATTGCGGTCGGCAGGGGTGCGACC
CGTTGGATATGACAAATGTCTGGGTGTATCCAACCGGGATTGCTTCCATA
TGACAATGTCTACCCGACATTGTTGTTCGAAAAGAGCGGCAGCAAAGGCA
CAGAAGACGCCGGGAGGGGGAGGCAGTCGCAAGGCGCTCGCTGCAGCGGC
TCGCATGGTCTTGATATACGTAACACTAACCTACCAGTTATCGTGCCCTC
ACTTTTCAAAAACAATATCAGGAGGGTAATGTCCAGGTACTGTTGCGATC
GTTACACTCCTGTACCCAAGCGCGGCCCCATAAAACTTGGGCAAGGCCGT
TCATTTTCTCGCGCGCTCCCTCCTTGCAGGACACGCTCATTGCCCCTCAC
CTCCCCCCCCTCCTTCGACACGCCATAATATCCATAGGTACGTGGACGAC
TGGATATCCCGCGTGTACGGCAGACGACGCACCATTCGTGCCAAGAACTG
CCAGGCAAGATATGACAAGGCGACAAAATATGAGACATAGCGCCGCGCTC
TCATCTGCCGTGGGGAGGGGAGGGGGGGGGGGGGGCTTGTCCCGAACAAA
CGTAACATTTCCCTGGGAGATAGCGCACTACAAAGTCGACACTCATTTTC
GTCTTGTGTTTACTTGTGGTGGGTGGGTGGATGGGTGTGTACCCGCGATG
GTCGGTGTTTATTTTTGTATCATTGCTGGTAACCAGGTTCTCGTTTATTC
CACGTTCGTCGTCCGTCCCCCCCCCCCCCCCTCCAAAAAATATCAACACC
CGCTTCCGCACACAGGTGGAGCACCACACGGGGGCCCACGGGCAGCGCTA
CAAGGCCGACACCTCCAAGGCCGGCAAGGTGGACGGACTGATCGAGGCCG
GGACTAAGCGCATAGTGCTGTGGGCCGAAGCCCACGGGGCAGAGAAGGCG
GCGAGCGACATCGCAACGGATTGGTTGGACGGGAAAACGGCCACCAAGGA
ACAGGCTCGGGACATTCCGTGACAGAAAAACGACTCGCGGGTGGTGTATC
ATTTCGCGCGCGCGCACACAAACACACACCGGGGGGAGGGGCATGCAGTC
CTCACAAAAGCCTCTCCTGCCCCTTTCCCTGTTACGCATACATTACGTTC
CCGCTTTCTCTAGAGTTTTCGGTATACAATCGTGTAACTACTGTGCCATG
TGGGGGGGGGGATTTTTGCGCGAGCACCATCCAAGGTACTGAAATAATGT
AAAACTCGCGTTTCTTTTTTTTTTAGTACGTTTTTCATCGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1055:29551..38192-

>mRNA_F-serratus_M_contig1055.563.1 ID=mRNA_F-serratus_M_contig1055.563.1|Name=mRNA_F-serratus_M_contig1055.563.1|organism=Fucus serratus male|type=CDS|length=2772bp|location=Sequence derived from alignment at F-serratus_M_contig1055:29551..38192- (Fucus serratus male)
ATGTGTATGAGGACCAAGGTACTCTTGGCGGTGTTTCTCTTGGTGAACGC
TCTCGTGCTCGTGAATCTCCGCGTGCCTCTCTTCCTAGATGTGTATGAGG
ACCAAGGTACTCTTGGCGGTGTTTCTCTTGGTGAACGCTCTCGTGCTCGT
GAATCTCCGCGTGCCTCTCTTCCTAGTGGGTCGGAACAGGGTCTGGCGGT
CTCGGGAGTCAAGCTGGGGGGCAGATGGTACTCCGGAGAGGCTGGGTTCC
GCGGGCGTTAAGCAGGAGGGCGCGTTGCCCGCCATCCAAAGGCCTGAGCG
GGGAAAGGTTGGGGTTGTGTTTCCAAACGTCTACGAGGGATCTGGAGGTG
GGGCGGGAAAGGCAGACAGCGGAGGGACGGTAGGGGCCGGCGAGGGCGAA
GGGGGGGATGTTGGTGGGGTGGAATCGGTAAAGCTGTTGGTGGAGGCCCC
GGCGGAACGCCAGGAGGCGGAGGCGAGGGAGTGCAGGGACATGGTTGAGT
CCCTGAAGATCGTGCCGAACAAGAGCTGGGGGAAGGCGAGCAAGGCCCAG
CAGCAGCGGTGGGAGTTGATGGAGTGCAACAGCGTGGTGGAGGGAAGGAC
GGTGCGCCGAGCCGAGCCGATCGACTGCACGTCACGTGGGTCGGAACAGG
GTCTGGCGGTCTCGGGAGTCAAGCTGGGGGGCAGATGGTACTCCGGAGAG
GCTGGGTTCCGCGGGCGTTAAGCAGGAGGGCGCGTTGCCCGCCATCCAAA
GGCCTGAGCGGGGAAAGGTTGGGGTTGTGTTTCCAAACGTCTACGAGGGA
TCTGGAGGTGGGGCGGGAAAGGCAGACAGCGGAGGGACGGTAGGGGCCGG
CGAGGGCGAAGGGGGGGATGTTGGTGGGGTGGAATCGGTAAAGCTGTTGG
TGGAGGCCCCGGCGGAACGCCAGGAGGCGGAGGCGAGGGAGTGCAGGGAC
ATGGTTGAGTCCCTGAAGATCGTGCCGAACAAGAGCTGGGGGAAGGCGAG
CAAGGCCCAGCAGCAGCGGTGGGAGTTGATGGAGTGCAACAGCGTGGTGG
AGGGAAGGACGGTGCGCCGAGCCGAGCCGATCGACTGCACGTCACGACCG
TCCAAGCCGAGCGACCCGCTGATCGCCGTGTGCGCGGGGAGCACGACGAG
GGGCGTGCCCCTCCTGGAGGAGCGGTCGCTGGCGCTGTTCCGGTTCCTCC
TGCCGTCCCTGGAGCGCACGGCAGACTGCGGCTTCAACTACGCGGCTTTC
ATCGGCTACGACGTGGGGGACAAGTTCTTCGACACAGACTCGGGCAGGGC
AAAGACCGTCCAAGCCGAGCGACCCGCTGATCGCCGTGTGCGCGGGGAGC
ACGACGAGGGGCGTGCCCCTCCTGGAGGAGCGGTCGCTGGCGCTGTTCCG
GTTCCTCCTGCCGTCCCTGGAGCGCACGGCAGACTGCGGCTTCAACTACG
CGGCTTTCATCGGCTACGACGTGGGGGACAAGTTCTTCGACACAGACTCG
GGCAGGGCAAAGATGTTGTCCTGGTTCGAAACAGAGGTGGCGCAACCGGC
AGCGTCGCGCGGCTTGAGAATAGAGCTGCATTTGGTCCGCGTCGACAACA
AGATACAGAAGCCCGGACCCGTGTTCACCGCCGTCACGAAGATGTTGTCC
TGGTTCGAAACAGAGGTGGCGCAACCGGCAGCGTCGCGCGGCTTGAGAAT
AGAGCTGCATTTGGTCCGCGTCGACAACAAGATACAGAAGCCCGGACCCG
TGTTCACCGCCGTCACGAAGGCCGCGTACGATCTGGGCGCGAACTATACC
TACCGCGTGAACGACGACTCTGAGATGATTACCCCGTGGGCCCGGAAGTT
TGTCGACGCGCTGGAGGCCGCGTACGATCTGGGCGCGAACTATACCTACC
GCGTGAACGACGACTCTGAGATGATTACCCCGTGGGCCCGGAAGTTTGTC
GACGCGCTGGAGGCGATGGGCACTCCCTACGGAGTCGTGGGTCCCGATTC
ATTGAACAACCACATCCTGGTGCACGACTTCACTCATCGGGTTCACATGG
ACATCTTCGAGGGGCAGTACTATCCGGAGGCCCTCACTGATTGGCGATGG
GCACTCCCTACGGAGTCGTGGGTCCCGATTCATTGAACAACCACATCCTG
GTGCACGACTTCACTCATCGGGTTCACATGGACATCTTCGAGGGGCAGTA
CTATCCGGAGGCCCTCACTGATTGGTACGTGGACGACTGGATATCCCGCG
TGTACGGCAGACGACGCACCATTCGTGCCAAGAACTGCCAGGTACGTGGA
CGACTGGATATCCCGCGTGTACGGCAGACGACGCACCATTCGTGCCAAGA
ACTGCCAGGTGGAGCACCACACGGGGGCCCACGGGCAGCGCTACAAGGCC
GACACCTCCAAGGCCGGCAAGGTGGACGGACTGATCGAGGCCGGGACTAA
GCGCATAGTGCTGTGGGCCGAAGCCCACGGGGCAGAGAAGGCGGCGAGCG
ACATCGCAACGGATTGGTTGGACGGGAAAACGGCCACCAAGGAACAGGCT
CGGGACATTCCGTGAGTGGAGCACCACACGGGGGCCCACGGGCAGCGCTA
CAAGGCCGACACCTCCAAGGCCGGCAAGGTGGACGGACTGATCGAGGCCG
GGACTAAGCGCATAGTGCTGTGGGCCGAAGCCCACGGGGCAGAGAAGGCG
GCGAGCGACATCGCAACGGATTGGTTGGACGGGAAAACGGCCACCAAGGA
ACAGGCTCGGGACATTCCGTGA
back to top