mRNA_F-serratus_M_contig1055.562.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1055.562.1
Unique NamemRNA_F-serratus_M_contig1055.562.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1055.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1055contigF-serratus_M_contig1055:28861..29379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928886.9099607-UTR-F-serratus_M_contig1055:28860..289771622928886.9099607-UTR-F-serratus_M_contig1055:28860..28977Fucus serratus maleUTRF-serratus_M_contig1055 28861..28977 +
1690962615.651683-UTR-F-serratus_M_contig1055:28860..289771690962615.651683-UTR-F-serratus_M_contig1055:28860..28977Fucus serratus maleUTRF-serratus_M_contig1055 28861..28977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928886.9237845-CDS-F-serratus_M_contig1055:28977..293791622928886.9237845-CDS-F-serratus_M_contig1055:28977..29379Fucus serratus maleCDSF-serratus_M_contig1055 28978..29379 +
1690962615.6633976-CDS-F-serratus_M_contig1055:28977..293791690962615.6633976-CDS-F-serratus_M_contig1055:28977..29379Fucus serratus maleCDSF-serratus_M_contig1055 28978..29379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1055.562.1prot_F-serratus_M_contig1055.562.1Fucus serratus malepolypeptideF-serratus_M_contig1055 28978..29379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1055.562.1

>prot_F-serratus_M_contig1055.562.1 ID=prot_F-serratus_M_contig1055.562.1|Name=mRNA_F-serratus_M_contig1055.562.1|organism=Fucus serratus male|type=polypeptide|length=134bp
MCVFLGNDARPLACRMDVRISSSFGDGGDCCDVLDSPQTARSSGSVTISS
SASCSQRSCPPTCVSAEGLALTKQTHPECHHIAPLNGVYLHPPTRFLKKS
NIALPRRKPRTQKTRARDDARGQGSPIKKHGSST
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mRNA from alignment at F-serratus_M_contig1055:28861..29379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1055.562.1 ID=mRNA_F-serratus_M_contig1055.562.1|Name=mRNA_F-serratus_M_contig1055.562.1|organism=Fucus serratus male|type=mRNA|length=519bp|location=Sequence derived from alignment at F-serratus_M_contig1055:28861..29379+ (Fucus serratus male)
CCTGGTAGTATATAATACATGTATTTTTCTTGGATACGACGCCCGTCATT
TCATCACGCGTACGCTTGCAAAGCTTAATCTTATAGTGGAACAATACTAT
ATATATATATATATTATATGTGTGTATTTCTTGGTAACGACGCCCGCCCG
CTGGCGTGCCGAATGGACGTCAGAATCAGTAGCTCTTTTGGTGATGGCGG
TGATTGTTGCGATGTTCTTGACTCCCCACAAACAGCGAGAAGTAGCGGTA
GCGTTACCATTAGCAGCAGCGCCAGCTGCTCGCAAAGGAGCTGCCCGCCC
ACCTGCGTGAGCGCTGAGGGGCTCGCGCTCACAAAACAGACACACCCCGA
GTGTCACCATATAGCCCCACTAAACGGGGTATACCTGCATCCACCAACCA
GATTCTTAAAAAAATCGAATATCGCTCTACCGCGTCGCAAGCCACGAACA
CAAAAAACACGCGCAAGAGATGATGCGCGTGGTCAAGGCAGTCCCATAAA
GAAGCATGGATCATCTACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1055:28861..29379+

>mRNA_F-serratus_M_contig1055.562.1 ID=mRNA_F-serratus_M_contig1055.562.1|Name=mRNA_F-serratus_M_contig1055.562.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig1055:28861..29379+ (Fucus serratus male)
ATGTGTGTATTTCTTGGTAACGACGCCCGCCCGCTGGCGTGCCGAATGGA
CGTCAGAATCAGTAGCTCTTTTGGTGATGGCGGTGATTGTTGCGATGTTC
TTGACTCCCCACAAACAGCGAGAAGTAGCGGTAGCGTTACCATTAGCAGC
AGCGCCAGCTGCTCGCAAAGGAGCTGCCCGCCCACCTGCGTGAGCGCTGA
GGGGCTCGCGCTCACAAAACAGACACACCCCGAGTGTCACCATATAGCCC
CACTAAACGGGGTATACCTGCATCCACCAACCAGATTCTTAAAAAAATCG
AATATCGCTCTACCGCGTCGCAAGCCACGAACACAAAAAACACGCGCAAG
AGATGATGCGCGTGGTCAAGGCAGTCCCATAAAGAAGCATGGATCATCTA
CCATGTGTGTATTTCTTGGTAACGACGCCCGCCCGCTGGCGTGCCGAATG
GACGTCAGAATCAGTAGCTCTTTTGGTGATGGCGGTGATTGTTGCGATGT
TCTTGACTCCCCACAAACAGCGAGAAGTAGCGGTAGCGTTACCATTAGCA
GCAGCGCCAGCTGCTCGCAAAGGAGCTGCCCGCCCACCTGCGTGAGCGCT
GAGGGGCTCGCGCTCACAAAACAGACACACCCCGAGTGTCACCATATAGC
CCCACTAAACGGGGTATACCTGCATCCACCAACCAGATTCTTAAAAAAAT
CGAATATCGCTCTACCGCGTCGCAAGCCACGAACACAAAAAACACGCGCA
AGAGATGATGCGCGTGGTCAAGGCAGTCCCATAAAGAAGCATGGATCATC
TACC
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