mRNA_F-serratus_M_contig1054.559.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1054.559.1
Unique NamemRNA_F-serratus_M_contig1054.559.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1054.559.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.720e-8
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  346 DIICLETFASFCQWWWEPVMTTLSRICEEWASDNPVRVHGFIGRLEAKRKLLETD 510
            D I +E FA F QWW  P+++TL  I  +WA   PVRVHGF+ RL AKR L++ +
Sbjct:  755 DFISVEAFAKFSQWW-APLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRE 808
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1054.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNY4_ECTSI4.720e-850.91SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1054contigF-serratus_M_contig1054:193749..194268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue9.8e-09
Seed eggNOG ortholog2880.D7FNX8
Hectar predicted targeting categoryother localisation
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size520
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928885.8453896-CDS-F-serratus_M_contig1054:193748..1942671622928885.8453896-CDS-F-serratus_M_contig1054:193748..194267Fucus serratus maleCDSF-serratus_M_contig1054 193749..194267 +
1690962615.283918-CDS-F-serratus_M_contig1054:193748..1942671690962615.283918-CDS-F-serratus_M_contig1054:193748..194267Fucus serratus maleCDSF-serratus_M_contig1054 193749..194267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1054.559.1prot_F-serratus_M_contig1054.559.1Fucus serratus malepolypeptideF-serratus_M_contig1054 193749..194267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1054.559.1

>prot_F-serratus_M_contig1054.559.1 ID=prot_F-serratus_M_contig1054.559.1|Name=mRNA_F-serratus_M_contig1054.559.1|organism=Fucus serratus male|type=polypeptide|length=173bp
LQTTGDDETQSVDDDHREEIVGSGRSFSVEGCFFSGVGLGLRGQGLGHGY
VSFKPRLLSDHHLRFIRDVLRYFTSRGEGHRRGTHSFGSNAGGYDEAREG
VQGEHGLNQSEDDVEDIICLETFASFCQWWWEPVMTTLSRICEEWASDNP
VRVHGFIGRLEAKRKLLETDQPG
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mRNA from alignment at F-serratus_M_contig1054:193749..194268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1054.559.1 ID=mRNA_F-serratus_M_contig1054.559.1|Name=mRNA_F-serratus_M_contig1054.559.1|organism=Fucus serratus male|type=mRNA|length=520bp|location=Sequence derived from alignment at F-serratus_M_contig1054:193749..194268+ (Fucus serratus male)
CTCCAGACAACCGGCGACGACGAGACGCAGTCCGTTGACGATGATCATCG
CGAGGAGATCGTGGGAAGCGGACGGAGTTTCAGCGTCGAAGGTTGCTTCT
TCAGCGGGGTGGGATTGGGTCTCCGTGGCCAAGGACTGGGACATGGGTAC
GTATCTTTCAAGCCCCGCCTTCTGAGCGACCACCACCTTAGGTTCATCCG
GGACGTCTTGCGGTACTTTACATCGCGTGGCGAAGGCCATCGACGCGGAA
CACACAGCTTCGGCAGCAATGCGGGGGGATACGACGAAGCGCGCGAAGGC
GTTCAGGGGGAGCATGGTTTAAACCAGTCGGAAGATGATGTTGAAGACAT
CATATGTCTAGAAACGTTCGCGAGCTTTTGTCAATGGTGGTGGGAGCCAG
TCATGACTACTCTGTCGCGAATTTGTGAAGAATGGGCCTCAGACAATCCG
GTAAGGGTGCACGGGTTTATTGGCAGGCTGGAGGCAAAACGCAAGCTTTT
GGAGACCGATCAGCCTGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1054:193749..194268+

>mRNA_F-serratus_M_contig1054.559.1 ID=mRNA_F-serratus_M_contig1054.559.1|Name=mRNA_F-serratus_M_contig1054.559.1|organism=Fucus serratus male|type=CDS|length=1038bp|location=Sequence derived from alignment at F-serratus_M_contig1054:193749..194268+ (Fucus serratus male)
CTCCAGACAACCGGCGACGACGAGACGCAGTCCGTTGACGATGATCATCG
CGAGGAGATCGTGGGAAGCGGACGGAGTTTCAGCGTCGAAGGTTGCTTCT
TCAGCGGGGTGGGATTGGGTCTCCGTGGCCAAGGACTGGGACATGGGTAC
GTATCTTTCAAGCCCCGCCTTCTGAGCGACCACCACCTTAGGTTCATCCG
GGACGTCTTGCGGTACTTTACATCGCGTGGCGAAGGCCATCGACGCGGAA
CACACAGCTTCGGCAGCAATGCGGGGGGATACGACGAAGCGCGCGAAGGC
GTTCAGGGGGAGCATGGTTTAAACCAGTCGGAAGATGATGTTGAAGACAT
CATATGTCTAGAAACGTTCGCGAGCTTTTGTCAATGGTGGTGGGAGCCAG
TCATGACTACTCTGTCGCGAATTTGTGAAGAATGGGCCTCAGACAATCCG
GTAAGGGTGCACGGGTTTATTGGCAGGCTGGAGGCAAAACGCAAGCTTTT
GGAGACCGATCAGCCTGGTCTCCAGACAACCGGCGACGACGAGACGCAGT
CCGTTGACGATGATCATCGCGAGGAGATCGTGGGAAGCGGACGGAGTTTC
AGCGTCGAAGGTTGCTTCTTCAGCGGGGTGGGATTGGGTCTCCGTGGCCA
AGGACTGGGACATGGGTACGTATCTTTCAAGCCCCGCCTTCTGAGCGACC
ACCACCTTAGGTTCATCCGGGACGTCTTGCGGTACTTTACATCGCGTGGC
GAAGGCCATCGACGCGGAACACACAGCTTCGGCAGCAATGCGGGGGGATA
CGACGAAGCGCGCGAAGGCGTTCAGGGGGAGCATGGTTTAAACCAGTCGG
AAGATGATGTTGAAGACATCATATGTCTAGAAACGTTCGCGAGCTTTTGT
CAATGGTGGTGGGAGCCAGTCATGACTACTCTGTCGCGAATTTGTGAAGA
ATGGGCCTCAGACAATCCGGTAAGGGTGCACGGGTTTATTGGCAGGCTGG
AGGCAAAACGCAAGCTTTTGGAGACCGATCAGCCTGGT
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